Wall clock time and date at job start Mon Mar 30 2020 06:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38287 * 119.94722 * 2 1 4 4 C 1.38115 * 120.05653 * 180.02562 * 3 2 1 5 5 C 1.38750 * 119.94620 * 359.80737 * 4 3 2 6 6 O 1.35899 * 120.06117 * 180.23216 * 5 4 3 7 7 C 1.42901 * 116.99808 * 0.21533 * 6 5 4 8 8 C 1.53004 * 109.47043 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.46958 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00414 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00529 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99458 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00746 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46758 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46989 * 119.99881 * 13 11 9 16 16 H 1.48490 * 109.47685 * 240.00325 * 13 11 9 17 17 C 1.38714 * 119.88950 * 0.44252 * 5 4 3 18 18 C 1.50695 * 120.03170 * 179.79320 * 17 5 4 19 19 C 1.52999 * 109.47581 * 84.72477 * 18 17 5 20 20 H 1.09002 * 109.46716 * 305.00061 * 19 18 17 21 21 C 1.52997 * 109.47317 * 185.00152 * 19 18 17 22 22 N 1.46894 * 109.46927 * 64.99671 * 19 18 17 23 23 C 1.38167 * 119.93902 * 359.51714 * 17 5 4 24 24 H 1.09000 * 109.47205 * 269.97962 * 1 2 3 25 25 H 1.08998 * 109.46938 * 29.98296 * 1 2 3 26 26 H 1.08994 * 109.47220 * 149.97796 * 1 2 3 27 27 H 1.07999 * 119.96674 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.03143 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.46894 * 299.99500 * 7 6 5 30 30 H 1.08995 * 109.47454 * 59.99791 * 7 6 5 31 31 H 1.08994 * 109.47190 * 299.98996 * 8 7 6 32 32 H 1.08995 * 109.47161 * 59.99618 * 8 7 6 33 33 H 0.96998 * 120.00200 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47061 * 324.71691 * 18 17 5 35 35 H 1.09000 * 109.47118 * 204.72286 * 18 17 5 36 36 H 1.09002 * 109.47153 * 299.99641 * 21 19 18 37 37 H 1.09001 * 109.46832 * 179.97438 * 21 19 18 38 38 H 1.09004 * 109.47261 * 59.99813 * 21 19 18 39 39 H 1.00906 * 111.00039 * 180.02562 * 22 19 18 40 40 H 1.00899 * 111.00319 * 303.95632 * 22 19 18 41 41 H 1.08002 * 119.97337 * 180.25683 * 23 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1982 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.2734 -0.0001 0.0030 6 8 5.6324 -0.0002 0.0072 7 6 6.2812 1.2730 0.0126 8 6 7.7980 1.0724 0.0175 9 6 8.4822 2.4151 0.0225 10 1 7.8941 3.3210 0.0219 11 6 9.8591 2.4874 0.0280 12 7 10.5753 1.3843 0.0283 13 14 10.7072 4.1517 0.0335 14 1 9.6845 5.2284 0.0316 15 1 11.5510 4.2732 1.2495 16 1 11.5603 4.2766 -1.1754 17 6 3.5787 -1.2007 -0.0023 18 6 4.3302 -2.5069 -0.0032 19 6 4.6950 -2.8865 1.4333 20 1 5.2463 -2.0682 1.8965 21 6 5.5641 -4.1456 1.4231 22 7 3.4678 -3.1448 2.1982 23 6 2.1971 -1.1979 -0.0009 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8897 -0.5141 27 1 1.6560 2.1327 0.0004 28 1 4.1172 2.1369 -0.0001 29 1 5.9912 1.8323 -0.8769 30 1 5.9856 1.8277 0.9031 31 1 8.0877 0.5134 0.9072 32 1 8.0940 0.5176 -0.8728 33 1 11.5440 1.4350 0.0317 34 1 5.2404 -2.4019 -0.5936 35 1 3.7037 -3.2862 -0.4370 36 1 5.0128 -4.9640 0.9599 37 1 5.8244 -4.4158 2.4465 38 1 6.4748 -3.9539 0.8555 39 1 3.6821 -3.3974 3.1513 40 1 2.8475 -2.3497 2.1659 41 1 1.6556 -2.1324 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071411992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:52 Heat of formation + Delta-G solvation = -64.354646 kcal Electronic energy + Delta-G solvation = -19695.797858 eV Core-core repulsion = 16766.759603 eV Total energy + Delta-G solvation = -2929.038255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30760 -38.81736 -37.42975 -35.51819 -33.39775 -32.35037 -31.94142 -30.17492 -27.77241 -27.39282 -26.47033 -24.02020 -22.33641 -21.98404 -20.88423 -19.22288 -18.14668 -17.32768 -17.04017 -16.61374 -16.53122 -16.26171 -15.91372 -15.24458 -14.72767 -14.62329 -14.48068 -14.31787 -13.97211 -13.61697 -13.25740 -13.10029 -12.93676 -12.80575 -12.72010 -12.61999 -12.50337 -12.44162 -12.18320 -12.02040 -11.72232 -11.50847 -11.49032 -11.32877 -10.64915 -9.84176 -9.57199 -8.86813 -8.29080 -6.42876 0.38429 0.49990 1.39057 1.39848 1.53284 2.26769 2.51932 2.77479 3.05408 3.60364 3.75395 3.92254 4.01911 4.10886 4.16154 4.22981 4.32085 4.39110 4.46549 4.52352 4.68615 4.72207 4.74796 4.85472 4.93694 4.95898 5.02603 5.09269 5.18072 5.27160 5.30724 5.33886 5.44059 5.44826 5.56839 5.66961 5.71532 5.96699 6.06738 6.20648 6.56299 6.59230 6.71831 7.27472 8.84173 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.004670 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.433673 B = 5993.681909 C = 7216.273637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.128 4.128 3 C -0.088 4.088 4 C -0.220 4.220 5 C 0.100 3.900 6 O -0.333 6.333 7 C 0.086 3.914 8 C 0.032 3.968 9 C -0.547 4.547 10 H 0.068 0.932 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.975 3.025 14 H -0.259 1.259 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.128 4.128 18 C -0.060 4.060 19 C 0.096 3.904 20 H 0.008 0.992 21 C -0.140 4.140 22 N -0.837 5.837 23 C -0.075 4.075 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.144 0.856 28 H 0.123 0.877 29 H 0.055 0.945 30 H 0.055 0.945 31 H -0.003 1.003 32 H -0.002 1.002 33 H 0.267 0.733 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.345 0.655 40 H 0.342 0.658 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.607 -5.354 1.935 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.239 4.239 5 C 0.054 3.946 6 O -0.248 6.248 7 C 0.011 3.989 8 C -0.005 4.005 9 C -0.585 4.585 10 H 0.087 0.913 11 C -0.195 4.195 12 N -0.569 5.569 13 Si 0.798 3.202 14 H -0.182 1.182 15 H -0.202 1.202 16 H -0.201 1.201 17 C -0.128 4.128 18 C -0.098 4.098 19 C -0.015 4.015 20 H 0.026 0.974 21 C -0.198 4.198 22 N -0.368 5.368 23 C -0.092 4.092 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.161 0.839 28 H 0.141 0.859 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.411 -6.169 1.406 20.416 hybrid contribution 1.515 1.812 0.558 2.427 sum -17.896 -4.357 1.964 18.523 Atomic orbital electron populations 1.20735 0.88632 1.03554 1.03035 1.20160 0.97786 0.92252 1.02583 1.21087 0.92293 0.99163 0.98012 1.21438 0.96500 0.96836 1.09090 1.19394 0.82588 0.95005 0.97580 1.86086 1.16909 1.33517 1.88265 1.22804 0.93574 0.82458 1.00031 1.18920 0.88704 0.97006 0.95872 1.21417 0.92280 0.92568 1.52211 0.91343 1.26017 0.98215 1.01191 0.94080 1.70122 1.06531 1.29651 1.50568 0.85251 0.78386 0.78559 0.77957 1.18244 1.20153 1.20135 1.19434 0.94205 0.92564 1.06634 1.20427 0.99427 0.93473 0.96469 1.21122 0.90767 0.96068 0.93579 0.97425 1.21759 0.98722 0.97068 1.02222 1.58872 1.15543 1.44108 1.18271 1.20998 0.91273 0.98943 0.98032 0.90395 0.90905 0.90567 0.83862 0.85937 0.92631 0.92726 0.98447 0.98385 0.92415 0.92504 0.89039 0.90876 0.92090 0.93101 0.84233 0.84519 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.13 -2.75 5.88 -19.85 -0.12 -2.87 16 3 C -0.09 -2.16 9.69 22.25 0.22 -1.94 16 4 C -0.22 -6.94 9.04 22.36 0.20 -6.74 16 5 C 0.10 3.55 6.66 22.51 0.15 3.70 16 6 O -0.33 -14.30 9.28 -92.41 -0.86 -15.15 16 7 C 0.09 3.85 4.68 71.98 0.34 4.19 16 8 C 0.03 1.78 5.34 29.85 0.16 1.94 16 9 C -0.55 -31.22 9.11 25.60 0.23 -30.98 16 10 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 11 C 0.00 0.21 5.46 84.65 0.46 0.67 16 12 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 13 Si 0.98 43.71 29.54 68.60 2.03 45.73 16 14 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 C -0.13 -3.80 4.60 -19.77 -0.09 -3.89 16 18 C -0.06 -1.73 4.74 29.85 0.14 -1.59 16 19 C 0.10 2.64 3.42 44.92 0.15 2.79 16 20 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 21 C -0.14 -3.45 9.49 71.98 0.68 -2.76 16 22 N -0.84 -18.47 9.24 -168.69 -1.56 -20.02 16 23 C -0.07 -1.74 8.17 22.25 0.18 -1.56 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 26 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 28 H 0.12 3.90 6.30 -2.91 -0.02 3.89 16 29 H 0.06 2.38 7.65 -2.39 -0.02 2.36 16 30 H 0.05 2.34 7.67 -2.39 -0.02 2.32 16 31 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.06 1.89 7.70 -2.39 -0.02 1.88 16 35 H 0.09 2.25 8.05 -2.39 -0.02 2.23 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.34 6.62 9.04 -89.69 -0.81 5.81 16 40 H 0.34 7.45 7.15 -89.69 -0.64 6.81 16 41 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -65.81 337.85 2.88 -62.93 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.44 Total: 22.70 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 3.42 Total: -39.76 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.27 Total: -76.46 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.86 Total: -15.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.81 2.88 -62.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071411992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.421 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds