Wall clock time and date at job start Mon Mar 30 2020 06:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34514 * 125.79110 * 2 1 4 4 C 1.41380 * 106.84499 * 180.02562 * 3 2 1 5 5 C 1.34517 * 106.83461 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.78432 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.45917 * 349.31656 * 6 5 4 8 8 C 1.53031 * 109.46471 * 109.29537 * 6 5 4 9 9 C 1.53120 * 109.28047 * 60.83363 * 8 6 5 10 10 H 1.09001 * 109.51995 * 297.75040 * 9 8 6 11 11 C 1.53007 * 109.52264 * 177.56222 * 9 8 6 12 12 C 1.53117 * 109.16029 * 57.65633 * 9 8 6 13 13 C 1.53039 * 109.27827 * 302.34764 * 12 9 8 14 14 N 1.46849 * 109.52272 * 59.17888 * 13 12 9 15 15 C 1.46896 * 110.99603 * 174.16068 * 14 13 12 16 16 C 1.50702 * 109.46827 * 176.45940 * 15 14 13 17 17 H 1.07999 * 120.00343 * 5.20298 * 16 15 14 18 18 C 1.37886 * 119.99959 * 185.20364 * 16 15 14 19 19 N 1.31517 * 119.99633 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99922 * 180.27520 * 18 16 15 21 21 H 1.48496 * 109.47311 * 269.72340 * 20 18 16 22 22 H 1.48502 * 109.47131 * 29.72684 * 20 18 16 23 23 H 1.48504 * 109.46772 * 149.72420 * 20 18 16 24 24 O 1.34292 * 108.42478 * 0.26220 * 5 4 3 25 25 H 1.09002 * 109.47656 * 89.99184 * 1 2 3 26 26 H 1.09002 * 109.47268 * 209.99615 * 1 2 3 27 27 H 1.09006 * 109.47012 * 329.98842 * 1 2 3 28 28 H 1.08001 * 126.57784 * 0.02562 * 3 2 1 29 29 H 1.07997 * 126.58445 * 180.02562 * 4 3 2 30 30 H 1.09007 * 109.50320 * 300.89052 * 8 6 5 31 31 H 1.09000 * 109.50576 * 180.77813 * 8 6 5 32 32 H 1.09003 * 109.46854 * 300.31331 * 11 9 8 33 33 H 1.08999 * 109.47160 * 60.31350 * 11 9 8 34 34 H 1.08999 * 109.46420 * 180.31748 * 11 9 8 35 35 H 1.08994 * 109.50153 * 182.40487 * 12 9 8 36 36 H 1.09000 * 109.50327 * 62.28513 * 12 9 8 37 37 H 1.09000 * 109.45771 * 299.16179 * 13 12 9 38 38 H 1.08996 * 109.45418 * 179.19161 * 13 12 9 39 39 H 1.09002 * 109.47206 * 56.46384 * 15 14 13 40 40 H 1.08999 * 109.47524 * 296.45913 * 15 14 13 41 41 H 0.96999 * 119.99379 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5813 -0.7122 -0.0015 6 6 4.7705 -1.6378 -0.0019 7 1 5.6775 -1.0638 -0.1918 8 6 4.8798 -2.3282 1.3595 9 6 3.6126 -3.1494 1.6131 10 1 2.7489 -2.4853 1.6468 11 6 3.7416 -3.8906 2.9454 12 6 3.4351 -4.1627 0.4790 13 6 3.3677 -3.4192 -0.8570 14 7 4.6029 -2.6495 -1.0530 15 6 4.6331 -2.0335 -2.3862 16 6 5.8704 -1.1834 -2.5188 17 1 6.6065 -1.1742 -1.7285 18 6 6.0627 -0.4173 -3.6490 19 7 5.1665 -0.4289 -4.6115 20 14 7.6001 0.6304 -3.8166 21 1 7.3428 1.9805 -3.2544 22 1 8.7180 -0.0090 -3.0772 23 1 7.9617 0.7526 -5.2518 24 8 2.2925 -1.0894 -0.0073 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.9665 2.1204 0.0004 29 1 4.5212 1.2433 -0.0004 30 1 4.9887 -1.5763 2.1412 31 1 5.7478 -2.9875 1.3646 32 1 4.6074 -4.5520 2.9109 33 1 3.8680 -3.1685 3.7521 34 1 2.8415 -4.4792 3.1223 35 1 2.5117 -4.7215 0.6315 36 1 4.2803 -4.8509 0.4702 37 1 2.5141 -2.7414 -0.8526 38 1 3.2557 -4.1390 -1.6678 39 1 3.7485 -1.4106 -2.5188 40 1 4.6453 -2.8139 -3.1470 41 1 5.3017 0.1104 -5.4064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076120363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:45 Heat of formation + Delta-G solvation = 5.357411 kcal Electronic energy + Delta-G solvation = -21293.645366 eV Core-core repulsion = 18367.630053 eV Total energy + Delta-G solvation = -2926.015313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.11855 -38.50039 -34.43111 -32.65141 -32.37058 -31.85006 -30.01970 -28.52107 -25.81097 -25.76665 -22.72475 -22.29313 -21.32933 -20.72725 -19.69590 -18.93798 -16.41279 -15.91223 -15.46032 -15.24270 -14.36610 -14.21536 -13.97073 -13.79667 -13.50003 -12.91068 -12.74234 -12.68795 -12.43202 -12.22201 -12.12818 -11.84093 -11.76056 -11.53456 -11.32099 -11.18309 -10.82702 -10.76561 -10.62619 -10.14506 -10.05278 -9.92372 -9.64872 -9.18276 -9.01927 -8.45579 -7.66037 -7.25153 -6.02495 -4.04292 2.34439 3.27015 3.30919 3.37465 3.40581 3.46862 4.42217 4.92810 5.11032 5.17151 5.22722 5.26040 5.33929 5.42242 5.57504 5.63763 5.67978 5.73949 5.83201 5.88555 5.95702 6.00700 6.06847 6.10140 6.22505 6.39650 6.42872 6.43848 6.47940 6.55565 6.58728 6.67884 6.70472 7.01705 7.17247 7.33415 7.48229 7.75939 7.79975 8.05651 8.20030 8.54295 9.02024 9.59756 11.08683 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.007962 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.681423 B = 3515.887828 C = 4287.583810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.049 4.049 3 C -0.207 4.207 4 C -0.209 4.209 5 C -0.002 4.002 6 C 0.169 3.831 7 H 0.121 0.879 8 C -0.107 4.107 9 C -0.096 4.096 10 H 0.071 0.929 11 C -0.142 4.142 12 C -0.105 4.105 13 C 0.041 3.959 14 N -0.524 5.524 15 C 0.193 3.807 16 C -0.513 4.513 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.272 1.272 23 H -0.286 1.286 24 O -0.163 6.163 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.064 0.936 39 H -0.002 1.002 40 H 0.028 0.972 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -2.049 12.345 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.098 4.098 3 C -0.226 4.226 4 C -0.229 4.229 5 C -0.054 4.054 6 C 0.059 3.941 7 H 0.139 0.861 8 C -0.145 4.145 9 C -0.114 4.114 10 H 0.089 0.911 11 C -0.200 4.200 12 C -0.143 4.143 13 C -0.087 4.087 14 N -0.247 5.247 15 C 0.068 3.932 16 C -0.551 4.551 17 H 0.081 0.919 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.197 1.197 23 H -0.212 1.212 24 O -0.060 6.060 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.016 0.984 40 H 0.046 0.954 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.313 -2.636 12.162 13.954 hybrid contribution 0.155 1.586 -0.530 1.679 sum -6.158 -1.051 11.632 13.203 Atomic orbital electron populations 1.20159 0.86184 1.03012 1.02884 1.22343 0.93781 0.85344 1.08359 1.21421 0.93191 0.98657 1.09372 1.21478 0.97576 0.94292 1.09508 1.23804 0.83015 0.95582 1.02970 1.20710 0.91801 0.89711 0.91865 0.86099 1.21753 0.98225 0.98840 0.95703 1.21231 0.98589 0.97205 0.94393 0.91091 1.21803 1.01237 0.99969 0.96969 1.21578 1.00905 0.97463 0.94312 1.22322 0.92432 0.97364 0.96559 1.62209 1.33903 1.23983 1.04581 1.19715 0.96746 0.93479 0.83279 1.21134 1.05250 1.25164 1.03555 0.91861 1.24951 0.96568 0.96878 0.95782 1.69964 1.34771 1.40705 1.07852 0.86575 0.83414 0.80628 0.77318 1.20720 1.19690 1.21228 1.84194 1.16666 1.33773 1.71400 0.90768 0.91256 0.90162 0.84586 0.84154 0.92107 0.90616 0.92806 0.93196 0.93223 0.92658 0.91659 0.93355 0.91730 0.98397 0.95375 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.42 36.00 0.38 -0.44 16 2 C -0.05 -0.85 7.32 -35.63 -0.26 -1.11 16 3 C -0.21 -3.73 10.81 -39.70 -0.43 -4.16 16 4 C -0.21 -4.16 10.79 -39.70 -0.43 -4.59 16 5 C 0.00 -0.04 4.34 -35.62 -0.15 -0.19 16 6 C 0.17 3.35 2.51 -68.87 -0.17 3.18 16 7 H 0.12 2.59 5.88 -51.93 -0.31 2.28 16 8 C -0.11 -1.72 4.89 -26.65 -0.13 -1.85 16 9 C -0.10 -1.42 2.47 -90.49 -0.22 -1.65 16 10 H 0.07 1.15 6.11 -51.93 -0.32 0.83 16 11 C -0.14 -1.71 9.20 37.16 0.34 -1.37 16 12 C -0.10 -1.63 5.38 -26.65 -0.14 -1.77 16 13 C 0.04 0.79 5.16 -3.83 -0.02 0.77 16 14 N -0.52 -11.43 4.70 -229.51 -1.08 -12.51 16 15 C 0.19 5.09 4.52 -4.98 -0.02 5.07 16 16 C -0.51 -14.20 8.28 -34.44 -0.28 -14.49 16 17 H 0.06 1.70 6.37 -52.49 -0.33 1.37 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 O -0.16 -3.16 5.86 5.73 0.03 -3.13 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.14 2.69 8.06 -52.49 -0.42 2.27 16 30 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.99 4.92 -51.93 -0.26 0.73 16 38 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 39 H 0.00 -0.05 7.53 -51.93 -0.39 -0.45 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -30.56 319.15 -8.83 -39.38 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.66 Total: 1.95 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -1.65 Total: -20.99 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.34 Total: -38.57 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.03 Total: -3.13 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.56 -8.83 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076120363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.742 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds