Wall clock time and date at job start Mon Mar 30 2020 06:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34514 * 125.79110 * 2 1 4 4 C 1.41380 * 106.84499 * 180.02562 * 3 2 1 5 5 C 1.34517 * 106.83461 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.78432 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.45917 * 349.31656 * 6 5 4 8 8 C 1.53031 * 109.46471 * 109.29537 * 6 5 4 9 9 C 1.53120 * 109.28047 * 60.83363 * 8 6 5 10 10 H 1.09001 * 109.51995 * 297.75040 * 9 8 6 11 11 C 1.53007 * 109.52264 * 177.56222 * 9 8 6 12 12 C 1.53117 * 109.16029 * 57.65633 * 9 8 6 13 13 C 1.53039 * 109.27827 * 302.34764 * 12 9 8 14 14 N 1.46849 * 109.52272 * 59.17888 * 13 12 9 15 15 C 1.46896 * 110.99603 * 174.16068 * 14 13 12 16 16 C 1.50702 * 109.46827 * 176.45940 * 15 14 13 17 17 H 1.07999 * 120.00343 * 5.20298 * 16 15 14 18 18 C 1.37886 * 119.99959 * 185.20364 * 16 15 14 19 19 N 1.31517 * 119.99633 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99922 * 180.27520 * 18 16 15 21 21 H 1.48496 * 109.47311 * 269.72340 * 20 18 16 22 22 H 1.48502 * 109.47131 * 29.72684 * 20 18 16 23 23 H 1.48504 * 109.46772 * 149.72420 * 20 18 16 24 24 O 1.34292 * 108.42478 * 0.26220 * 5 4 3 25 25 H 1.09002 * 109.47656 * 89.99184 * 1 2 3 26 26 H 1.09002 * 109.47268 * 209.99615 * 1 2 3 27 27 H 1.09006 * 109.47012 * 329.98842 * 1 2 3 28 28 H 1.08001 * 126.57784 * 0.02562 * 3 2 1 29 29 H 1.07997 * 126.58445 * 180.02562 * 4 3 2 30 30 H 1.09007 * 109.50320 * 300.89052 * 8 6 5 31 31 H 1.09000 * 109.50576 * 180.77813 * 8 6 5 32 32 H 1.09003 * 109.46854 * 300.31331 * 11 9 8 33 33 H 1.08999 * 109.47160 * 60.31350 * 11 9 8 34 34 H 1.08999 * 109.46420 * 180.31748 * 11 9 8 35 35 H 1.08994 * 109.50153 * 182.40487 * 12 9 8 36 36 H 1.09000 * 109.50327 * 62.28513 * 12 9 8 37 37 H 1.09000 * 109.45771 * 299.16179 * 13 12 9 38 38 H 1.08996 * 109.45418 * 179.19161 * 13 12 9 39 39 H 1.09002 * 109.47206 * 56.46384 * 15 14 13 40 40 H 1.08999 * 109.47524 * 296.45913 * 15 14 13 41 41 H 0.96999 * 119.99379 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5813 -0.7122 -0.0015 6 6 4.7705 -1.6378 -0.0019 7 1 5.6775 -1.0638 -0.1918 8 6 4.8798 -2.3282 1.3595 9 6 3.6126 -3.1494 1.6131 10 1 2.7489 -2.4853 1.6468 11 6 3.7416 -3.8906 2.9454 12 6 3.4351 -4.1627 0.4790 13 6 3.3677 -3.4192 -0.8570 14 7 4.6029 -2.6495 -1.0530 15 6 4.6331 -2.0335 -2.3862 16 6 5.8704 -1.1834 -2.5188 17 1 6.6065 -1.1742 -1.7285 18 6 6.0627 -0.4173 -3.6490 19 7 5.1665 -0.4289 -4.6115 20 14 7.6001 0.6304 -3.8166 21 1 7.3428 1.9805 -3.2544 22 1 8.7180 -0.0090 -3.0772 23 1 7.9617 0.7526 -5.2518 24 8 2.2925 -1.0894 -0.0073 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.9665 2.1204 0.0004 29 1 4.5212 1.2433 -0.0004 30 1 4.9887 -1.5763 2.1412 31 1 5.7478 -2.9875 1.3646 32 1 4.6074 -4.5520 2.9109 33 1 3.8680 -3.1685 3.7521 34 1 2.8415 -4.4792 3.1223 35 1 2.5117 -4.7215 0.6315 36 1 4.2803 -4.8509 0.4702 37 1 2.5141 -2.7414 -0.8526 38 1 3.2557 -4.1390 -1.6678 39 1 3.7485 -1.4106 -2.5188 40 1 4.6453 -2.8139 -3.1470 41 1 5.3017 0.1104 -5.4064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076120363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:45 Heat of formation + Delta-G solvation = -12.689382 kcal Electronic energy + Delta-G solvation = -21294.427934 eV Core-core repulsion = 18367.630053 eV Total energy + Delta-G solvation = -2926.797881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.58256 -40.00088 -36.05980 -34.33670 -34.08675 -33.24619 -31.36864 -30.15039 -27.58815 -27.02913 -24.42870 -23.84530 -22.78505 -22.34259 -21.09193 -20.35042 -18.49749 -17.40275 -17.13232 -16.81061 -16.08876 -15.76555 -15.32832 -15.24514 -14.93135 -14.26974 -14.13387 -14.00580 -13.87955 -13.70235 -13.64457 -13.42308 -13.12142 -12.89344 -12.74262 -12.68788 -12.56224 -12.42583 -12.15406 -11.95902 -11.61953 -11.39004 -11.08657 -10.89192 -10.67049 -10.63159 -9.22248 -8.95912 -8.22115 -6.31787 0.90209 1.38370 1.39613 1.50889 1.77673 2.06582 2.38136 3.12139 3.31131 3.75046 3.92435 3.99994 4.01358 4.16080 4.22054 4.34242 4.51736 4.57921 4.68490 4.69104 4.77471 4.84886 4.86086 4.88684 4.93156 4.96877 5.04326 5.10305 5.14509 5.21454 5.23078 5.27548 5.36637 5.38586 5.46169 5.61077 5.70315 5.73422 5.99513 6.19304 6.41646 6.60463 6.84267 7.37718 8.90097 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.007962 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.681423 B = 3515.887828 C = 4287.583810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.050 4.050 3 C -0.225 4.225 4 C -0.231 4.231 5 C -0.020 4.020 6 C 0.166 3.834 7 H 0.098 0.902 8 C -0.101 4.101 9 C -0.091 4.091 10 H 0.058 0.942 11 C -0.135 4.135 12 C -0.096 4.096 13 C 0.038 3.962 14 N -0.526 5.526 15 C 0.213 3.787 16 C -0.522 4.522 17 H 0.069 0.931 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.259 1.259 23 H -0.283 1.283 24 O -0.172 6.172 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.160 0.840 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.056 0.944 39 H -0.041 1.041 40 H -0.003 1.003 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 -2.114 14.361 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.099 4.099 3 C -0.244 4.244 4 C -0.251 4.251 5 C -0.072 4.072 6 C 0.057 3.943 7 H 0.116 0.884 8 C -0.138 4.138 9 C -0.110 4.110 10 H 0.076 0.924 11 C -0.192 4.192 12 C -0.134 4.134 13 C -0.090 4.090 14 N -0.248 5.248 15 C 0.087 3.913 16 C -0.560 4.560 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.574 5.574 20 Si 0.788 3.212 21 H -0.200 1.200 22 H -0.183 1.183 23 H -0.209 1.209 24 O -0.069 6.069 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.178 0.822 29 H 0.156 0.844 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.075 0.925 39 H -0.024 1.024 40 H 0.015 0.985 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.502 -2.713 14.209 15.860 hybrid contribution 0.129 1.613 -1.172 1.998 sum -6.373 -1.100 13.037 14.553 Atomic orbital electron populations 1.20389 0.82526 1.05269 1.03857 1.23319 0.95861 0.84582 1.06166 1.21753 0.92375 1.00227 1.10030 1.21738 0.98732 0.94631 1.10044 1.23747 0.83598 0.95694 1.04173 1.20687 0.90963 0.89467 0.93174 0.88389 1.21739 0.99366 0.99273 0.93443 1.21185 0.97170 0.96804 0.95835 0.92378 1.21729 1.02351 1.00095 0.95024 1.21546 1.02380 0.97352 0.92075 1.22418 0.90827 0.96877 0.98848 1.62152 1.35485 1.24279 1.02920 1.19273 0.94850 0.91776 0.85385 1.21434 1.05600 1.25217 1.03709 0.91307 1.25880 0.99872 0.98225 0.95325 1.70109 1.36961 1.41809 1.08520 0.85462 0.79474 0.78819 0.77432 1.20000 1.18331 1.20853 1.84178 1.16480 1.34729 1.71529 0.90250 0.89705 0.87229 0.82195 0.84393 0.90599 0.89930 0.91984 0.92250 0.91817 0.90285 0.91113 0.94571 0.92514 1.02367 0.98460 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.45 10.42 71.23 0.74 -0.71 16 2 C -0.05 -1.69 7.32 24.83 0.18 -1.51 16 3 C -0.22 -8.03 10.81 22.19 0.24 -7.79 16 4 C -0.23 -9.45 10.79 22.19 0.24 -9.21 16 5 C -0.02 -0.84 4.34 24.83 0.11 -0.74 16 6 C 0.17 6.74 2.51 44.19 0.11 6.85 16 7 H 0.10 4.34 5.88 -2.39 -0.01 4.33 16 8 C -0.10 -3.11 4.89 30.64 0.15 -2.96 16 9 C -0.09 -2.53 2.47 -10.71 -0.03 -2.56 16 10 H 0.06 1.79 6.11 -2.39 -0.01 1.77 16 11 C -0.13 -2.76 9.20 71.98 0.66 -2.10 16 12 C -0.10 -2.82 5.38 30.65 0.16 -2.65 16 13 C 0.04 1.48 5.16 86.33 0.45 1.92 16 14 N -0.53 -23.63 4.70 -880.05 -4.14 -27.77 16 15 C 0.21 11.86 4.52 85.56 0.39 12.25 16 16 C -0.52 -29.79 8.28 25.60 0.21 -29.58 16 17 H 0.07 3.78 6.37 -2.91 -0.02 3.76 16 18 C 0.01 0.30 5.46 84.66 0.46 0.76 16 19 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 20 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 O -0.17 -6.70 5.86 -2.40 -0.01 -6.71 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.16 4.73 8.06 -2.91 -0.02 4.71 16 29 H 0.14 5.49 8.06 -2.91 -0.02 5.47 16 30 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.52 4.92 -2.39 -0.01 1.51 16 38 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 39 H -0.04 -2.59 7.53 -2.39 -0.02 -2.61 16 40 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -68.42 319.15 3.23 -65.19 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.99 Total: 17.96 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 4.08 Total: -38.03 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.85 Total: -85.20 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.01 Total: -6.71 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.42 3.23 -65.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076120363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.500 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds