Wall clock time and date at job start Mon Mar 30 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34511 * 125.79394 * 2 1 4 4 C 1.41381 * 106.84470 * 180.22573 * 3 2 1 5 5 C 1.34523 * 106.83769 * 359.56786 * 4 3 2 6 6 C 1.50696 * 125.79040 * 180.18567 * 5 4 3 7 7 H 1.09000 * 109.46167 * 11.84829 * 6 5 4 8 8 C 1.53035 * 109.46377 * 251.87433 * 6 5 4 9 9 C 1.53125 * 109.27663 * 299.16234 * 8 6 5 10 10 H 1.08996 * 109.52192 * 62.24895 * 9 8 6 11 11 C 1.52998 * 109.52281 * 182.44345 * 9 8 6 12 12 C 1.53122 * 109.15994 * 302.34570 * 9 8 6 13 13 C 1.53045 * 109.27653 * 57.65325 * 12 9 8 14 14 N 1.46846 * 109.52537 * 300.82073 * 13 12 9 15 15 C 1.46900 * 111.00036 * 185.83938 * 14 13 12 16 16 C 1.50700 * 109.47150 * 52.32486 * 15 14 13 17 17 H 1.07996 * 119.99587 * 5.11086 * 16 15 14 18 18 C 1.37872 * 120.00143 * 185.11912 * 16 15 14 19 19 N 1.31520 * 119.99729 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00388 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46972 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47288 * 119.99492 * 20 18 16 23 23 H 1.48495 * 109.47090 * 239.99880 * 20 18 16 24 24 O 1.34306 * 108.42023 * 0.43212 * 5 4 3 25 25 H 1.09002 * 109.46825 * 90.00238 * 1 2 3 26 26 H 1.08999 * 109.47716 * 210.00673 * 1 2 3 27 27 H 1.09007 * 109.46850 * 330.00471 * 1 2 3 28 28 H 1.08007 * 126.57436 * 359.95582 * 3 2 1 29 29 H 1.07999 * 126.58139 * 179.73192 * 4 3 2 30 30 H 1.08997 * 109.50550 * 59.10305 * 8 6 5 31 31 H 1.09003 * 109.50446 * 179.18635 * 8 6 5 32 32 H 1.09002 * 109.47388 * 60.00144 * 11 9 8 33 33 H 1.09000 * 109.46973 * 179.97438 * 11 9 8 34 34 H 1.08998 * 109.47234 * 300.00010 * 11 9 8 35 35 H 1.08996 * 109.50473 * 177.59377 * 12 9 8 36 36 H 1.09000 * 109.50757 * 297.67728 * 12 9 8 37 37 H 1.09000 * 109.46110 * 60.83866 * 13 12 9 38 38 H 1.09002 * 109.45916 * 180.80235 * 13 12 9 39 39 H 1.09000 * 109.46692 * 172.32242 * 15 14 13 40 40 H 1.09002 * 109.46822 * 292.31978 * 15 14 13 41 41 H 0.96999 * 120.00260 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0053 5 6 3.5814 -0.7123 0.0014 6 6 4.7705 -1.6381 0.0032 7 1 5.6754 -1.0664 0.2092 8 6 4.8938 -2.3123 -1.3651 9 6 3.6292 -3.1304 -1.6414 10 1 2.7659 -2.4659 -1.6761 11 6 3.7720 -3.8558 -2.9808 12 6 3.4401 -4.1570 -0.5211 13 6 3.3590 -3.4291 0.8228 14 7 4.5919 -2.6619 1.0406 15 6 4.6085 -2.0615 2.3812 16 6 4.3383 -3.1270 3.4121 17 1 4.2529 -4.1605 3.1108 18 6 4.1997 -2.7822 4.7398 19 7 4.3040 -1.5236 5.1067 20 14 3.8640 -4.1028 6.0177 21 1 3.7916 -5.4284 5.3523 22 1 4.9593 -4.1110 7.0206 23 1 2.5739 -3.8187 6.6959 24 8 2.2924 -1.0895 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.9666 2.1204 -0.0007 29 1 4.5212 1.2432 -0.0108 30 1 5.0107 -1.5513 -2.1366 31 1 5.7622 -2.9711 -1.3692 32 1 4.6340 -4.5219 -2.9433 33 1 2.8716 -4.4382 -3.1764 34 1 3.9123 -3.1246 -3.7769 35 1 2.5184 -4.7138 -0.6896 36 1 4.2849 -4.8457 -0.5121 37 1 2.5054 -2.7512 0.8176 38 1 3.2386 -4.1583 1.6239 39 1 5.5854 -1.6153 2.5673 40 1 3.8394 -1.2916 2.4440 41 1 4.2069 -1.2810 6.0408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076120364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:48 Heat of formation + Delta-G solvation = 5.221060 kcal Electronic energy + Delta-G solvation = -21157.274771 eV Core-core repulsion = 18231.253545 eV Total energy + Delta-G solvation = -2926.021226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.23687 -38.51120 -34.40371 -32.78122 -32.56897 -31.76390 -30.04363 -28.46148 -25.90777 -25.77623 -22.80470 -22.28356 -21.44557 -20.66654 -19.80008 -18.97866 -16.42244 -15.80236 -15.72496 -15.27231 -14.38557 -14.27591 -14.02357 -13.67843 -13.53931 -12.91332 -12.81837 -12.76979 -12.43346 -12.36038 -12.09898 -11.87515 -11.78341 -11.64812 -11.25712 -11.24207 -10.83860 -10.75012 -10.63162 -10.12362 -10.06068 -9.76237 -9.70523 -9.32303 -9.02661 -8.45304 -7.77246 -7.24560 -6.02191 -4.03709 2.22464 3.09154 3.30652 3.36393 3.38070 3.42554 4.42611 4.88636 5.06095 5.13231 5.21329 5.23985 5.33643 5.35441 5.47340 5.56468 5.59956 5.71627 5.83328 5.85617 5.91017 6.00945 6.06241 6.12921 6.14035 6.23614 6.36362 6.39647 6.45273 6.50060 6.58469 6.65966 6.85025 7.01175 7.07671 7.36561 7.50470 7.67648 7.79578 8.05529 8.20463 8.55270 9.04207 9.60219 11.08868 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.007498 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.396037 B = 3733.498022 C = 4534.470692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.210 4.210 4 C -0.221 4.221 5 C -0.008 4.008 6 C 0.158 3.842 7 H 0.101 0.899 8 C -0.102 4.102 9 C -0.095 4.095 10 H 0.070 0.930 11 C -0.142 4.142 12 C -0.109 4.109 13 C 0.051 3.949 14 N -0.522 5.522 15 C 0.192 3.808 16 C -0.512 4.512 17 H 0.065 0.935 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 O -0.154 6.154 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.000 1.000 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 1.115 -13.848 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.229 4.229 4 C -0.241 4.241 5 C -0.061 4.061 6 C 0.048 3.952 7 H 0.119 0.881 8 C -0.140 4.140 9 C -0.114 4.114 10 H 0.088 0.912 11 C -0.200 4.200 12 C -0.147 4.147 13 C -0.076 4.076 14 N -0.245 5.245 15 C 0.067 3.933 16 C -0.550 4.550 17 H 0.083 0.917 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 O -0.051 6.051 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.045 0.955 40 H 0.018 0.982 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.907 0.576 -13.696 14.254 hybrid contribution -0.751 0.425 1.033 1.346 sum -4.658 1.001 -12.663 13.530 Atomic orbital electron populations 1.20196 0.86000 1.03698 1.02603 1.22445 0.93987 0.85255 1.07208 1.21399 0.92974 0.98767 1.09778 1.21502 0.97797 0.94137 1.10676 1.23831 0.83663 0.95308 1.03258 1.20719 0.90789 0.89788 0.93904 0.88137 1.21672 0.98605 0.98851 0.94867 1.21228 0.98207 0.97342 0.94619 0.91194 1.21801 1.01336 0.99998 0.96839 1.21667 1.00924 0.97467 0.94676 1.22289 0.91181 0.97911 0.96261 1.62229 1.36022 1.22510 1.03750 1.19739 0.96574 0.94518 0.82485 1.21231 1.48395 0.94000 0.91413 0.91653 1.24985 0.95499 0.95401 0.98598 1.69984 1.50331 1.16220 1.16889 0.86479 0.77756 0.81958 0.81479 1.19634 1.20971 1.21136 1.84277 1.16343 1.33605 1.70841 0.90825 0.90810 0.90000 0.84407 0.84220 0.92149 0.90518 0.92800 0.93136 0.93300 0.92656 0.91753 0.93599 0.89481 0.95472 0.98204 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.42 36.00 0.38 -0.48 16 2 C -0.04 -0.66 7.32 -35.63 -0.26 -0.92 16 3 C -0.21 -3.54 10.81 -39.70 -0.43 -3.97 16 4 C -0.22 -3.99 10.79 -39.70 -0.43 -4.42 16 5 C -0.01 -0.16 4.15 -35.62 -0.15 -0.30 16 6 C 0.16 2.93 2.81 -68.88 -0.19 2.74 16 7 H 0.10 1.82 8.09 -51.93 -0.42 1.40 16 8 C -0.10 -1.55 4.89 -26.65 -0.13 -1.68 16 9 C -0.10 -1.42 2.47 -90.49 -0.22 -1.64 16 10 H 0.07 1.13 6.13 -51.93 -0.32 0.81 16 11 C -0.14 -1.71 9.20 37.16 0.34 -1.36 16 12 C -0.11 -1.79 5.38 -26.65 -0.14 -1.94 16 13 C 0.05 1.05 4.86 -3.83 -0.02 1.03 16 14 N -0.52 -11.40 4.70 -229.51 -1.08 -12.48 16 15 C 0.19 5.08 4.71 -4.98 -0.02 5.06 16 16 C -0.51 -14.47 8.28 -34.44 -0.29 -14.75 16 17 H 0.07 1.82 6.37 -52.49 -0.33 1.48 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 20 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 O -0.15 -2.96 5.87 5.68 0.03 -2.93 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 28 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 29 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.00 4.90 -51.93 -0.25 0.75 16 38 H 0.09 1.95 5.91 -51.93 -0.31 1.64 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.00 0.00 7.17 -51.93 -0.37 -0.37 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 318.82 15.07 4.80 4.80 Total: -1.00 -31.02 318.82 -8.83 -39.85 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.64 Total: 1.33 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -1.66 Total: -21.11 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.34 Total: -38.74 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: 0.03 Total: -2.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.02 -8.83 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076120364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.067 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds