Wall clock time and date at job start Mon Mar 30 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34511 * 125.79394 * 2 1 4 4 C 1.41381 * 106.84470 * 180.22573 * 3 2 1 5 5 C 1.34523 * 106.83769 * 359.56786 * 4 3 2 6 6 C 1.50696 * 125.79040 * 180.18567 * 5 4 3 7 7 H 1.09000 * 109.46167 * 11.84829 * 6 5 4 8 8 C 1.53035 * 109.46377 * 251.87433 * 6 5 4 9 9 C 1.53125 * 109.27663 * 299.16234 * 8 6 5 10 10 H 1.08996 * 109.52192 * 62.24895 * 9 8 6 11 11 C 1.52998 * 109.52281 * 182.44345 * 9 8 6 12 12 C 1.53122 * 109.15994 * 302.34570 * 9 8 6 13 13 C 1.53045 * 109.27653 * 57.65325 * 12 9 8 14 14 N 1.46846 * 109.52537 * 300.82073 * 13 12 9 15 15 C 1.46900 * 111.00036 * 185.83938 * 14 13 12 16 16 C 1.50700 * 109.47150 * 52.32486 * 15 14 13 17 17 H 1.07996 * 119.99587 * 5.11086 * 16 15 14 18 18 C 1.37872 * 120.00143 * 185.11912 * 16 15 14 19 19 N 1.31520 * 119.99729 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00388 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46972 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47288 * 119.99492 * 20 18 16 23 23 H 1.48495 * 109.47090 * 239.99880 * 20 18 16 24 24 O 1.34306 * 108.42023 * 0.43212 * 5 4 3 25 25 H 1.09002 * 109.46825 * 90.00238 * 1 2 3 26 26 H 1.08999 * 109.47716 * 210.00673 * 1 2 3 27 27 H 1.09007 * 109.46850 * 330.00471 * 1 2 3 28 28 H 1.08007 * 126.57436 * 359.95582 * 3 2 1 29 29 H 1.07999 * 126.58139 * 179.73192 * 4 3 2 30 30 H 1.08997 * 109.50550 * 59.10305 * 8 6 5 31 31 H 1.09003 * 109.50446 * 179.18635 * 8 6 5 32 32 H 1.09002 * 109.47388 * 60.00144 * 11 9 8 33 33 H 1.09000 * 109.46973 * 179.97438 * 11 9 8 34 34 H 1.08998 * 109.47234 * 300.00010 * 11 9 8 35 35 H 1.08996 * 109.50473 * 177.59377 * 12 9 8 36 36 H 1.09000 * 109.50757 * 297.67728 * 12 9 8 37 37 H 1.09000 * 109.46110 * 60.83866 * 13 12 9 38 38 H 1.09002 * 109.45916 * 180.80235 * 13 12 9 39 39 H 1.09000 * 109.46692 * 172.32242 * 15 14 13 40 40 H 1.09002 * 109.46822 * 292.31978 * 15 14 13 41 41 H 0.96999 * 120.00260 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0053 5 6 3.5814 -0.7123 0.0014 6 6 4.7705 -1.6381 0.0032 7 1 5.6754 -1.0664 0.2092 8 6 4.8938 -2.3123 -1.3651 9 6 3.6292 -3.1304 -1.6414 10 1 2.7659 -2.4659 -1.6761 11 6 3.7720 -3.8558 -2.9808 12 6 3.4401 -4.1570 -0.5211 13 6 3.3590 -3.4291 0.8228 14 7 4.5919 -2.6619 1.0406 15 6 4.6085 -2.0615 2.3812 16 6 4.3383 -3.1270 3.4121 17 1 4.2529 -4.1605 3.1108 18 6 4.1997 -2.7822 4.7398 19 7 4.3040 -1.5236 5.1067 20 14 3.8640 -4.1028 6.0177 21 1 3.7916 -5.4284 5.3523 22 1 4.9593 -4.1110 7.0206 23 1 2.5739 -3.8187 6.6959 24 8 2.2924 -1.0895 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.9666 2.1204 -0.0007 29 1 4.5212 1.2432 -0.0108 30 1 5.0107 -1.5513 -2.1366 31 1 5.7622 -2.9711 -1.3692 32 1 4.6340 -4.5219 -2.9433 33 1 2.8716 -4.4382 -3.1764 34 1 3.9123 -3.1246 -3.7769 35 1 2.5184 -4.7138 -0.6896 36 1 4.2849 -4.8457 -0.5121 37 1 2.5054 -2.7512 0.8176 38 1 3.2386 -4.1583 1.6239 39 1 5.5854 -1.6153 2.5673 40 1 3.8394 -1.2916 2.4440 41 1 4.2069 -1.2810 6.0408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076120364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:48 Heat of formation + Delta-G solvation = -13.244139 kcal Electronic energy + Delta-G solvation = -21158.075482 eV Core-core repulsion = 18231.253545 eV Total energy + Delta-G solvation = -2926.821937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.62377 -39.99903 -36.04353 -34.45790 -34.11359 -33.24997 -31.35807 -30.09271 -27.62183 -27.08282 -24.51351 -23.79728 -22.81830 -22.30471 -21.12852 -20.35734 -18.52110 -17.31061 -17.18331 -16.96373 -16.07257 -15.79132 -15.33140 -15.13407 -14.99854 -14.26091 -14.15178 -14.11151 -13.93865 -13.68548 -13.65787 -13.33285 -13.20494 -12.86784 -12.79922 -12.69578 -12.53991 -12.42355 -12.16061 -11.98581 -11.54133 -11.37181 -11.15963 -10.89154 -10.71806 -10.63056 -9.20632 -8.99720 -8.23644 -6.33729 0.85231 1.37582 1.38099 1.51783 1.71949 2.03702 2.37451 3.09764 3.31165 3.69459 3.91292 3.96846 4.01444 4.11110 4.17586 4.35325 4.45470 4.57269 4.66366 4.69276 4.77963 4.84270 4.85808 4.86793 4.90943 4.95919 5.06882 5.08683 5.13974 5.18900 5.24275 5.28504 5.35811 5.41885 5.46294 5.60817 5.69895 5.70695 5.99083 6.24182 6.33821 6.62395 6.83993 7.35852 8.88355 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.007498 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.396037 B = 3733.498022 C = 4534.470692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.049 4.049 3 C -0.223 4.223 4 C -0.233 4.233 5 C -0.032 4.032 6 C 0.152 3.848 7 H 0.096 0.904 8 C -0.095 4.095 9 C -0.091 4.091 10 H 0.056 0.944 11 C -0.135 4.135 12 C -0.101 4.101 13 C 0.053 3.947 14 N -0.524 5.524 15 C 0.212 3.788 16 C -0.527 4.527 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.968 3.032 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.279 1.279 24 O -0.171 6.171 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.164 0.836 29 H 0.151 0.849 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.061 0.939 39 H -0.001 1.001 40 H -0.038 1.038 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 0.200 -15.233 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.099 4.099 3 C -0.242 4.242 4 C -0.253 4.253 5 C -0.084 4.084 6 C 0.043 3.957 7 H 0.114 0.886 8 C -0.132 4.132 9 C -0.110 4.110 10 H 0.075 0.925 11 C -0.192 4.192 12 C -0.138 4.138 13 C -0.074 4.074 14 N -0.247 5.247 15 C 0.086 3.914 16 C -0.565 4.565 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.185 1.185 22 H -0.202 1.202 23 H -0.205 1.205 24 O -0.068 6.068 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.182 0.818 29 H 0.169 0.831 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.017 0.983 40 H -0.020 1.020 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.725 -0.345 -15.112 15.837 hybrid contribution -0.521 0.798 1.445 1.731 sum -5.246 0.453 -13.667 14.646 Atomic orbital electron populations 1.20402 0.82864 1.04458 1.04590 1.23372 0.95917 0.84758 1.05857 1.21766 0.92359 1.00166 1.09894 1.21853 0.99115 0.94183 1.10179 1.23816 0.83945 0.95762 1.04877 1.20838 0.90684 0.89480 0.94721 0.88585 1.21670 0.99220 0.99375 0.92940 1.21176 0.97339 0.96752 0.95685 0.92526 1.21726 1.02254 1.00222 0.94987 1.21611 1.02011 0.97579 0.92643 1.22246 0.90121 0.97025 0.98029 1.62151 1.36780 1.23397 1.02361 1.19291 0.93503 0.93271 0.85304 1.21546 1.48334 0.94369 0.92267 0.91521 1.25933 0.95031 0.97753 1.00913 1.70120 1.51238 1.18448 1.17554 0.85346 0.77766 0.79186 0.78432 1.18504 1.20181 1.20527 1.84238 1.16552 1.34778 1.71218 0.88110 0.91151 0.88066 0.81824 0.83096 0.90081 0.89711 0.91967 0.92128 0.91986 0.90927 0.91334 0.95085 0.92104 0.98268 1.02007 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.42 71.24 0.74 -0.81 16 2 C -0.05 -1.65 7.32 24.83 0.18 -1.47 16 3 C -0.22 -7.40 10.81 22.19 0.24 -7.16 16 4 C -0.23 -8.54 10.79 22.19 0.24 -8.30 16 5 C -0.03 -1.25 4.15 24.83 0.10 -1.15 16 6 C 0.15 5.76 2.81 44.19 0.12 5.89 16 7 H 0.10 3.61 8.09 -2.39 -0.02 3.59 16 8 C -0.09 -2.74 4.89 30.65 0.15 -2.59 16 9 C -0.09 -2.54 2.47 -10.71 -0.03 -2.56 16 10 H 0.06 1.76 6.13 -2.39 -0.01 1.75 16 11 C -0.13 -2.79 9.20 71.98 0.66 -2.12 16 12 C -0.10 -3.18 5.38 30.65 0.16 -3.02 16 13 C 0.05 2.23 4.86 86.33 0.42 2.65 16 14 N -0.52 -23.63 4.70 -880.05 -4.14 -27.76 16 15 C 0.21 11.85 4.71 85.56 0.40 12.26 16 16 C -0.53 -30.73 8.28 25.60 0.21 -30.52 16 17 H 0.07 3.79 6.37 -2.91 -0.02 3.77 16 18 C 0.00 0.10 5.46 84.65 0.46 0.57 16 19 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 20 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 O -0.17 -6.65 5.87 -2.58 -0.02 -6.67 16 25 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 29 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.03 1.41 4.90 -2.39 -0.01 1.40 16 38 H 0.06 2.81 5.91 -2.39 -0.01 2.80 16 39 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H -0.04 -2.36 7.17 -2.39 -0.02 -2.38 16 41 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -69.22 318.82 3.23 -65.99 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.99 Total: 17.14 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 4.08 Total: -38.35 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.85 Total: -85.37 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.02 Total: -6.67 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.22 3.23 -65.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076120364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.749 kcal (2) G-P(sol) polarization free energy of solvation -69.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds