Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34515 * 125.78945 * 2 1 4 4 C 1.41379 * 106.83903 * 179.74897 * 3 2 1 5 5 C 1.34509 * 106.84177 * 0.37525 * 4 3 2 6 6 C 1.50703 * 125.79105 * 179.89132 * 5 4 3 7 7 H 1.08998 * 109.44948 * 339.68327 * 6 5 4 8 8 C 1.53036 * 109.46445 * 99.65792 * 6 5 4 9 9 C 1.53118 * 109.27913 * 179.19506 * 8 6 5 10 10 H 1.08998 * 109.51995 * 62.25307 * 9 8 6 11 11 C 1.52994 * 109.57466 * 182.40875 * 9 8 6 12 12 C 1.53115 * 109.16177 * 302.34923 * 9 8 6 13 13 C 1.53039 * 109.27819 * 57.65187 * 12 9 8 14 14 N 1.46840 * 109.52528 * 300.81928 * 13 12 9 15 15 C 1.46895 * 111.00229 * 185.83875 * 14 13 12 16 16 C 1.50706 * 109.47182 * 66.04782 * 15 14 13 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 O 1.34303 * 108.42382 * 359.62439 * 5 4 3 25 25 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47129 * 300.00107 * 1 2 3 27 27 H 1.09000 * 109.46966 * 59.99948 * 1 2 3 28 28 H 1.08001 * 126.57495 * 0.02562 * 3 2 1 29 29 H 1.07997 * 126.57576 * 180.23538 * 4 3 2 30 30 H 1.09004 * 109.50124 * 59.25607 * 8 6 5 31 31 H 1.08998 * 109.53471 * 299.15701 * 8 6 5 32 32 H 1.09001 * 109.47244 * 179.71395 * 11 9 8 33 33 H 1.09000 * 109.47566 * 299.71809 * 11 9 8 34 34 H 1.09001 * 109.47349 * 59.71642 * 11 9 8 35 35 H 1.08995 * 109.50368 * 297.71167 * 12 9 8 36 36 H 1.09002 * 109.50618 * 177.59122 * 12 9 8 37 37 H 1.09009 * 109.45752 * 180.80365 * 13 12 9 38 38 H 1.08998 * 109.46500 * 60.83961 * 13 12 9 39 39 H 1.09001 * 109.47613 * 306.05128 * 15 14 13 40 40 H 1.09006 * 109.47521 * 186.04746 * 15 14 13 41 41 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0059 5 6 3.5814 -0.7121 0.0008 6 6 4.7706 -1.6379 0.0018 7 1 5.6503 -1.0989 -0.3497 8 6 5.0189 -2.1474 1.4234 9 6 6.2153 -3.1030 1.4161 10 1 7.1082 -2.5661 1.0960 11 6 6.4324 -3.6631 2.8232 12 6 5.9340 -4.2531 0.4452 13 6 5.6591 -3.6824 -0.9479 14 7 4.5058 -2.7756 -0.8881 15 6 4.1268 -2.3164 -2.2310 16 6 3.6224 -3.4851 -3.0378 17 1 3.5865 -4.4704 -2.5968 18 6 3.2068 -3.2966 -4.3387 19 7 3.2509 -2.0969 -4.8759 20 14 2.5822 -4.7454 -5.3389 21 1 2.1990 -4.2812 -6.6964 22 1 3.6524 -5.7690 -5.4490 23 1 1.3980 -5.3375 -4.6662 24 8 2.2924 -1.0895 0.0004 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9665 2.1204 0.0004 29 1 4.5211 1.2433 0.0111 30 1 4.1342 -2.6746 1.7807 31 1 5.2305 -1.3043 2.0810 32 1 7.2812 -4.3469 2.8150 33 1 6.6326 -2.8438 3.5136 34 1 5.5382 -4.1978 3.1434 35 1 5.0638 -4.8133 0.7871 36 1 6.7997 -4.9140 0.4034 37 1 5.4444 -4.4981 -1.6385 38 1 6.5348 -3.1340 -1.2950 39 1 4.9958 -1.8819 -2.7252 40 1 3.3414 -1.5649 -2.1499 41 1 3.5756 -1.3447 -4.3566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076120365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = -3.576594 kcal Electronic energy + Delta-G solvation = -20768.753091 eV Core-core repulsion = 17842.350370 eV Total energy + Delta-G solvation = -2926.402721 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13728 -38.69381 -34.61058 -32.79884 -32.66968 -31.98811 -30.11630 -28.37417 -25.90958 -25.41594 -22.88941 -22.35532 -21.24760 -21.02716 -19.63127 -19.16572 -16.74623 -16.22822 -15.68488 -15.00629 -14.55278 -14.25964 -13.84151 -13.78056 -13.66839 -13.21770 -12.84110 -12.80973 -12.72733 -12.32185 -12.06202 -11.93089 -11.77479 -11.62050 -11.40022 -11.15842 -10.87858 -10.75846 -10.66071 -10.36153 -10.08282 -9.98447 -9.86998 -9.39605 -8.63151 -8.33569 -7.78265 -7.35462 -6.32470 -4.00446 2.20618 3.01816 3.40259 3.45650 3.48780 3.66890 4.50935 4.64499 4.90798 5.05891 5.08600 5.15709 5.36262 5.43144 5.43480 5.55159 5.60191 5.64956 5.68416 5.72529 5.84184 5.86203 5.92517 5.97036 5.99206 6.19690 6.24713 6.28489 6.30199 6.34376 6.47109 6.59522 6.66774 6.70784 6.94940 7.05753 7.14320 7.65553 7.85269 8.01221 8.34822 8.61533 8.90841 9.69896 11.06499 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.008564 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.882202 B = 3268.864507 C = 4936.745319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.022 4.022 3 C -0.216 4.216 4 C -0.226 4.226 5 C 0.027 3.973 6 C 0.159 3.841 7 H 0.056 0.944 8 C -0.101 4.101 9 C -0.093 4.093 10 H 0.064 0.936 11 C -0.143 4.143 12 C -0.113 4.113 13 C 0.065 3.935 14 N -0.521 5.521 15 C 0.184 3.816 16 C -0.584 4.584 17 H 0.057 0.943 18 C 0.014 3.986 19 N -0.914 5.914 20 Si 1.071 2.929 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.288 1.288 24 O -0.147 6.147 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.019 0.981 39 H -0.023 1.023 40 H 0.026 0.974 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 2.132 13.427 13.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.235 4.235 4 C -0.246 4.246 5 C -0.025 4.025 6 C 0.050 3.950 7 H 0.073 0.927 8 C -0.139 4.139 9 C -0.111 4.111 10 H 0.083 0.917 11 C -0.200 4.200 12 C -0.150 4.150 13 C -0.063 4.063 14 N -0.246 5.246 15 C 0.059 3.941 16 C -0.623 4.623 17 H 0.075 0.925 18 C -0.190 4.190 19 N -0.550 5.550 20 Si 0.900 3.100 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.214 1.214 24 O -0.042 6.042 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.037 0.963 39 H -0.005 1.005 40 H 0.044 0.956 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.766 1.128 12.125 12.201 hybrid contribution 1.398 1.304 1.051 2.181 sum 2.164 2.432 13.176 13.572 Atomic orbital electron populations 1.20229 0.85710 1.03924 1.02824 1.22396 0.94061 0.84633 1.06228 1.21367 0.92672 0.98933 1.10573 1.21408 0.97972 0.93743 1.11440 1.22208 0.83248 0.93544 1.03483 1.20162 0.89456 0.90307 0.95124 0.92653 1.21673 0.98819 0.98622 0.94762 1.21173 0.97711 0.96695 0.95549 0.91729 1.21788 1.01483 1.00545 0.96172 1.21715 1.01151 0.97020 0.95163 1.21973 0.90868 0.97276 0.96193 1.62036 1.35024 1.14414 1.13115 1.19850 0.94150 0.96865 0.83205 1.21929 1.46355 0.95087 0.98939 0.92505 1.25824 0.95325 1.01902 0.95933 1.70782 1.44313 0.99947 1.40008 0.83511 0.76370 0.74178 0.75987 1.20858 1.21490 1.21407 1.84116 1.15966 1.34069 1.70059 0.90606 0.90313 0.89989 0.84133 0.84223 0.90859 0.91956 0.92860 0.93062 0.92632 0.91230 0.92154 0.89311 0.96261 1.00526 0.95613 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.42 36.01 0.38 -0.57 16 2 C -0.02 -0.40 7.32 -35.62 -0.26 -0.66 16 3 C -0.22 -3.68 10.81 -39.70 -0.43 -4.11 16 4 C -0.23 -4.08 10.80 -39.71 -0.43 -4.51 16 5 C 0.03 0.53 4.42 -35.62 -0.16 0.38 16 6 C 0.16 3.03 2.30 -68.87 -0.16 2.87 16 7 H 0.06 1.05 8.13 -51.93 -0.42 0.62 16 8 C -0.10 -1.57 4.64 -26.65 -0.12 -1.69 16 9 C -0.09 -1.28 2.79 -90.50 -0.25 -1.53 16 10 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 11 C -0.14 -1.59 9.20 37.15 0.34 -1.25 16 12 C -0.11 -1.74 5.38 -26.65 -0.14 -1.88 16 13 C 0.06 1.28 5.30 -3.84 -0.02 1.26 16 14 N -0.52 -11.63 4.47 -229.51 -1.03 -12.66 16 15 C 0.18 4.97 3.82 -4.98 -0.02 4.95 16 16 C -0.58 -16.99 8.43 -34.44 -0.29 -17.28 16 17 H 0.06 1.64 7.14 -52.48 -0.37 1.27 16 18 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 19 N -0.91 -28.60 13.65 55.43 0.76 -27.85 16 20 Si 1.07 25.86 29.90 -169.99 -5.08 20.78 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 O -0.15 -3.14 10.15 5.70 0.06 -3.08 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.14 2.19 8.06 -52.49 -0.42 1.76 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.92 6.72 -51.92 -0.35 1.57 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H -0.02 -0.65 7.99 -51.93 -0.41 -1.07 16 40 H 0.03 0.76 6.05 -51.93 -0.31 0.44 16 41 H 0.27 8.41 7.22 -40.82 -0.29 8.12 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -32.62 327.65 -8.90 -41.53 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.88 Total: 0.06 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -1.66 Total: -23.72 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.27 Total: -40.50 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: 0.06 Total: -3.08 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.62 -8.90 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076120365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.952 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds