Wall clock time and date at job start Mon Mar 30 2020 06:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34515 * 125.78945 * 2 1 4 4 C 1.41379 * 106.83903 * 179.74897 * 3 2 1 5 5 C 1.34509 * 106.84177 * 0.37525 * 4 3 2 6 6 C 1.50703 * 125.79105 * 179.89132 * 5 4 3 7 7 H 1.08998 * 109.44948 * 339.68327 * 6 5 4 8 8 C 1.53036 * 109.46445 * 99.65792 * 6 5 4 9 9 C 1.53118 * 109.27913 * 179.19506 * 8 6 5 10 10 H 1.08998 * 109.51995 * 62.25307 * 9 8 6 11 11 C 1.52994 * 109.57466 * 182.40875 * 9 8 6 12 12 C 1.53115 * 109.16177 * 302.34923 * 9 8 6 13 13 C 1.53039 * 109.27819 * 57.65187 * 12 9 8 14 14 N 1.46840 * 109.52528 * 300.81928 * 13 12 9 15 15 C 1.46895 * 111.00229 * 185.83875 * 14 13 12 16 16 C 1.50706 * 109.47182 * 66.04782 * 15 14 13 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00102 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 O 1.34303 * 108.42382 * 359.62439 * 5 4 3 25 25 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47129 * 300.00107 * 1 2 3 27 27 H 1.09000 * 109.46966 * 59.99948 * 1 2 3 28 28 H 1.08001 * 126.57495 * 0.02562 * 3 2 1 29 29 H 1.07997 * 126.57576 * 180.23538 * 4 3 2 30 30 H 1.09004 * 109.50124 * 59.25607 * 8 6 5 31 31 H 1.08998 * 109.53471 * 299.15701 * 8 6 5 32 32 H 1.09001 * 109.47244 * 179.71395 * 11 9 8 33 33 H 1.09000 * 109.47566 * 299.71809 * 11 9 8 34 34 H 1.09001 * 109.47349 * 59.71642 * 11 9 8 35 35 H 1.08995 * 109.50368 * 297.71167 * 12 9 8 36 36 H 1.09002 * 109.50618 * 177.59122 * 12 9 8 37 37 H 1.09009 * 109.45752 * 180.80365 * 13 12 9 38 38 H 1.08998 * 109.46500 * 60.83961 * 13 12 9 39 39 H 1.09001 * 109.47613 * 306.05128 * 15 14 13 40 40 H 1.09006 * 109.47521 * 186.04746 * 15 14 13 41 41 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0059 5 6 3.5814 -0.7121 0.0008 6 6 4.7706 -1.6379 0.0018 7 1 5.6503 -1.0989 -0.3497 8 6 5.0189 -2.1474 1.4234 9 6 6.2153 -3.1030 1.4161 10 1 7.1082 -2.5661 1.0960 11 6 6.4324 -3.6631 2.8232 12 6 5.9340 -4.2531 0.4452 13 6 5.6591 -3.6824 -0.9479 14 7 4.5058 -2.7756 -0.8881 15 6 4.1268 -2.3164 -2.2310 16 6 3.6224 -3.4851 -3.0378 17 1 3.5865 -4.4704 -2.5968 18 6 3.2068 -3.2966 -4.3387 19 7 3.2509 -2.0969 -4.8759 20 14 2.5822 -4.7454 -5.3389 21 1 2.1990 -4.2812 -6.6964 22 1 3.6524 -5.7690 -5.4490 23 1 1.3980 -5.3375 -4.6662 24 8 2.2924 -1.0895 0.0004 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9665 2.1204 0.0004 29 1 4.5211 1.2433 0.0111 30 1 4.1342 -2.6746 1.7807 31 1 5.2305 -1.3043 2.0810 32 1 7.2812 -4.3469 2.8150 33 1 6.6326 -2.8438 3.5136 34 1 5.5382 -4.1978 3.1434 35 1 5.0638 -4.8133 0.7871 36 1 6.7997 -4.9140 0.4034 37 1 5.4444 -4.4981 -1.6385 38 1 6.5348 -3.1340 -1.2950 39 1 4.9958 -1.8819 -2.7252 40 1 3.3414 -1.5649 -2.1499 41 1 3.5756 -1.3447 -4.3566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076120365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:50 Heat of formation + Delta-G solvation = -23.549089 kcal Electronic energy + Delta-G solvation = -20769.619163 eV Core-core repulsion = 17842.350370 eV Total energy + Delta-G solvation = -2927.268793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.57728 -40.18578 -36.29515 -34.61406 -34.09769 -33.54608 -31.41963 -29.93775 -27.30344 -27.15975 -24.64513 -23.91458 -22.68695 -22.60054 -20.97446 -20.56265 -18.94024 -17.75871 -17.17900 -16.50068 -16.10445 -15.69018 -15.50608 -15.37097 -15.05725 -14.89974 -14.26984 -13.99978 -13.79741 -13.71837 -13.66870 -13.51667 -13.22925 -13.00967 -12.71155 -12.67806 -12.59415 -12.41648 -12.27729 -11.95195 -11.62254 -11.37443 -11.27562 -10.83214 -10.74715 -10.59475 -9.19755 -9.17642 -8.71583 -6.41158 0.77649 1.49217 1.58605 1.63860 1.78080 2.04666 2.52772 3.00908 3.12983 3.55953 3.81717 3.88610 3.92397 4.09121 4.12091 4.16605 4.21553 4.44760 4.50876 4.62669 4.66272 4.68110 4.76621 4.77464 4.81699 4.85604 4.89836 4.96256 5.01202 5.02061 5.08326 5.20328 5.23965 5.26361 5.35650 5.50854 5.63525 5.75700 5.95109 6.25315 6.35251 6.39853 6.60024 7.39461 8.66383 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.008564 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.882202 B = 3268.864507 C = 4936.745319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.221 4.221 4 C -0.227 4.227 5 C -0.009 4.009 6 C 0.155 3.845 7 H 0.054 0.946 8 C -0.091 4.091 9 C -0.089 4.089 10 H 0.073 0.927 11 C -0.135 4.135 12 C -0.103 4.103 13 C 0.062 3.938 14 N -0.530 5.530 15 C 0.204 3.796 16 C -0.596 4.596 17 H 0.054 0.946 18 C -0.038 4.038 19 N -0.936 5.936 20 Si 1.121 2.879 21 H -0.282 1.282 22 H -0.266 1.266 23 H -0.271 1.271 24 O -0.182 6.182 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.173 0.827 29 H 0.160 0.840 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.017 0.983 39 H -0.053 1.053 40 H -0.002 1.002 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 1.699 14.992 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.239 4.239 4 C -0.247 4.247 5 C -0.059 4.059 6 C 0.047 3.953 7 H 0.072 0.928 8 C -0.129 4.129 9 C -0.107 4.107 10 H 0.091 0.909 11 C -0.193 4.193 12 C -0.140 4.140 13 C -0.065 4.065 14 N -0.255 5.255 15 C 0.077 3.923 16 C -0.634 4.634 17 H 0.072 0.928 18 C -0.235 4.235 19 N -0.573 5.573 20 Si 0.941 3.059 21 H -0.207 1.207 22 H -0.191 1.191 23 H -0.196 1.196 24 O -0.079 6.079 25 H 0.088 0.912 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.190 0.810 29 H 0.178 0.822 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.035 0.965 39 H -0.035 1.035 40 H 0.016 0.984 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.979 0.700 13.733 13.785 hybrid contribution 1.331 1.517 0.588 2.103 sum 2.310 2.218 14.321 14.675 Atomic orbital electron populations 1.20435 0.82835 1.04245 1.04999 1.23353 0.95924 0.84232 1.05526 1.21782 0.91997 1.00269 1.09889 1.21805 0.99440 0.93347 1.10071 1.22503 0.83269 0.94587 1.05576 1.20335 0.89356 0.89273 0.96354 0.92823 1.21645 0.99175 0.99681 0.92380 1.21180 0.96993 0.95597 0.96955 0.90900 1.21725 1.02101 1.01284 0.94154 1.21664 1.01983 0.97877 0.92503 1.22035 0.89716 0.95981 0.98801 1.61954 1.36753 1.16036 1.10765 1.19434 0.92001 0.95339 0.85516 1.22249 1.46027 0.95544 0.99550 0.92769 1.27465 0.94837 1.03620 0.97584 1.70927 1.45991 1.00407 1.39989 0.82903 0.77034 0.71443 0.74506 1.20697 1.19080 1.19646 1.84071 1.16838 1.36010 1.70966 0.91214 0.86831 0.88914 0.80972 0.82211 0.92156 0.89701 0.91253 0.91563 0.92795 0.91928 0.89406 0.91909 0.96527 1.03517 0.98406 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 10.42 71.24 0.74 -1.03 16 2 C -0.04 -1.44 7.32 24.83 0.18 -1.26 16 3 C -0.22 -7.32 10.81 22.19 0.24 -7.08 16 4 C -0.23 -8.19 10.80 22.19 0.24 -7.95 16 5 C -0.01 -0.36 4.42 24.83 0.11 -0.25 16 6 C 0.16 6.05 2.30 44.19 0.10 6.15 16 7 H 0.05 2.08 8.13 -2.39 -0.02 2.06 16 8 C -0.09 -2.74 4.64 30.65 0.14 -2.60 16 9 C -0.09 -2.25 2.79 -10.72 -0.03 -2.28 16 10 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 11 C -0.14 -2.57 9.20 71.98 0.66 -1.90 16 12 C -0.10 -3.04 5.38 30.65 0.16 -2.87 16 13 C 0.06 2.51 5.30 86.33 0.46 2.97 16 14 N -0.53 -24.55 4.47 -880.04 -3.93 -28.48 16 15 C 0.20 11.54 3.82 85.56 0.33 11.87 16 16 C -0.60 -35.81 8.43 25.60 0.22 -35.59 16 17 H 0.05 3.22 7.14 -2.91 -0.02 3.20 16 18 C -0.04 -2.30 5.46 84.65 0.46 -1.83 16 19 N -0.94 -60.36 13.65 21.45 0.29 -60.07 16 20 Si 1.12 52.13 29.90 68.60 2.05 54.18 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 O -0.18 -8.04 10.15 -2.51 -0.03 -8.06 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.17 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.16 4.89 8.06 -2.91 -0.02 4.86 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 2.80 6.72 -2.38 -0.02 2.79 16 38 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 39 H -0.05 -3.21 7.99 -2.39 -0.02 -3.23 16 40 H 0.00 -0.12 6.05 -2.38 -0.01 -0.14 16 41 H 0.25 16.55 7.22 -92.71 -0.67 15.88 16 Total: -1.00 -73.97 327.65 3.48 -70.49 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.08 Total: 15.60 kcal Atomic # 6 Polarization: -47.67 SS G_CDS: 4.02 Total: -43.66 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -3.64 Total: -88.55 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.03 Total: -8.06 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.05 Total: 54.18 kcal Total: -73.97 3.48 -70.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076120365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.938 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds