Wall clock time and date at job start Mon Mar 30 2020 07:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47220 * 2 1 4 4 C 1.53009 * 109.46773 * 299.63374 * 3 2 1 5 5 C 1.53001 * 109.47119 * 59.63210 * 3 2 1 6 6 O 1.42900 * 109.47153 * 65.00375 * 5 3 2 7 7 N 1.46904 * 109.47230 * 179.63793 * 3 2 1 8 8 C 1.46893 * 111.00136 * 64.88262 * 7 3 2 9 9 H 1.08997 * 109.47380 * 330.31661 * 8 7 3 10 10 C 1.50700 * 109.47090 * 90.31330 * 8 7 3 11 11 H 1.08000 * 120.00002 * 56.60164 * 10 8 7 12 12 C 1.37878 * 120.00151 * 236.60387 * 10 8 7 13 13 N 1.31519 * 119.99955 * 172.19749 * 12 10 8 14 14 Si 1.86797 * 119.99996 * 352.19638 * 12 10 8 15 15 H 1.48498 * 109.47260 * 91.22931 * 14 12 10 16 16 H 1.48501 * 109.47283 * 211.23344 * 14 12 10 17 17 H 1.48504 * 109.46921 * 331.23106 * 14 12 10 18 18 C 1.50699 * 109.47039 * 210.31114 * 8 7 3 19 19 C 1.38237 * 120.00259 * 316.30644 * 18 8 7 20 20 C 1.38235 * 120.00141 * 179.80987 * 19 18 8 21 21 C 1.38233 * 119.99673 * 0.39899 * 20 19 18 22 22 C 1.38232 * 120.00134 * 359.85736 * 21 20 19 23 23 C 1.38228 * 120.00229 * 359.95400 * 22 21 20 24 24 H 1.09005 * 109.46635 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46715 * 300.00099 * 1 2 3 26 26 H 1.08997 * 109.47098 * 60.00288 * 1 2 3 27 27 H 1.09004 * 109.47158 * 239.99740 * 2 1 3 28 28 H 1.08997 * 109.47098 * 119.99712 * 2 1 3 29 29 H 1.09002 * 109.46885 * 186.83062 * 4 3 2 30 30 H 1.08996 * 109.47045 * 306.82597 * 4 3 2 31 31 H 1.08999 * 109.46977 * 66.82962 * 4 3 2 32 32 H 1.09000 * 109.47007 * 304.99772 * 5 3 2 33 33 H 1.09002 * 109.46793 * 185.00255 * 5 3 2 34 34 H 0.96696 * 114.00161 * 179.97438 * 6 5 3 35 35 H 1.00906 * 110.99244 * 300.92947 * 7 3 2 36 36 H 0.97003 * 119.99386 * 179.97438 * 13 12 10 37 37 H 1.07998 * 119.99350 * 0.02562 * 19 18 8 38 38 H 1.07996 * 119.99733 * 180.23425 * 20 19 18 39 39 H 1.08006 * 119.99645 * 179.83286 * 21 20 19 40 40 H 1.08011 * 119.99842 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.00042 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5375 2.1610 -1.2539 5 6 1.5225 2.1664 1.2446 6 8 2.0853 1.5665 2.4131 7 7 3.5091 1.4425 0.0088 8 6 4.0429 0.8578 -1.2285 9 1 3.3420 0.1164 -1.6120 10 6 4.2363 1.9442 -2.2549 11 1 4.8579 2.7975 -2.0274 12 6 3.6196 1.8488 -3.4843 13 7 3.6609 2.8626 -4.3212 14 14 2.7254 0.2797 -3.9615 15 1 1.2992 0.3813 -3.5607 16 1 2.8141 0.0867 -5.4313 17 1 3.3523 -0.8765 -3.2718 18 6 5.3664 0.1967 -0.9414 19 6 6.2991 0.8342 -0.1449 20 6 7.5115 0.2260 0.1216 21 6 7.7944 -1.0161 -0.4151 22 6 6.8638 -1.6513 -1.2159 23 6 5.6499 -1.0448 -1.4793 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.9976 3.1472 -1.3165 30 1 1.8030 1.5796 -2.1368 31 1 0.4541 2.2682 -1.2016 32 1 0.4359 2.0896 1.2841 33 1 1.8112 3.2166 1.2004 34 1 1.8006 1.9761 3.2415 35 1 3.8657 0.9600 0.8200 36 1 3.2273 2.7952 -5.1863 37 1 6.0792 1.8059 0.2719 38 1 8.2387 0.7224 0.7470 39 1 8.7428 -1.4901 -0.2090 40 1 7.0850 -2.6216 -1.6356 41 1 4.9229 -1.5409 -2.1053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080898964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:46 Heat of formation + Delta-G solvation = -20.452928 kcal Electronic energy + Delta-G solvation = -21165.786194 eV Core-core repulsion = 18238.651660 eV Total energy + Delta-G solvation = -2927.134534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.09633 -37.98344 -35.53006 -33.41009 -31.95008 -30.30574 -30.05131 -28.16789 -26.99592 -25.17273 -23.34828 -22.53117 -21.77564 -19.91826 -18.16690 -16.99094 -16.92800 -16.40723 -15.57641 -14.81046 -14.53706 -14.23178 -14.10529 -13.90060 -13.17069 -12.84437 -12.76262 -12.60965 -12.40611 -12.10511 -11.89178 -11.64705 -11.55882 -11.49908 -10.90800 -10.76885 -10.54287 -10.43385 -10.20015 -10.07071 -9.75403 -9.65819 -9.58165 -9.40787 -8.58154 -8.22732 -7.87162 -7.19526 -6.14014 -4.05450 2.09424 2.13734 3.15930 3.24900 3.28759 4.29611 4.51412 4.63055 4.97515 5.23573 5.31927 5.36437 5.52572 5.58220 5.62932 5.71383 5.78433 5.82380 5.91852 5.99732 6.17818 6.22780 6.26131 6.30077 6.33514 6.45914 6.55998 6.58931 6.71969 6.74709 6.81686 7.00378 7.13895 7.18571 7.37556 7.48149 7.56891 7.76294 7.91113 8.09105 8.41423 8.71922 9.00972 9.49169 10.98670 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.010129 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.594796 B = 2763.688243 C = 3801.638925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.153 4.153 3 C 0.128 3.872 4 C -0.136 4.136 5 C 0.088 3.912 6 O -0.569 6.569 7 N -0.661 5.661 8 C 0.207 3.793 9 H 0.027 0.973 10 C -0.472 4.472 11 H 0.080 0.920 12 C 0.076 3.924 13 N -0.889 5.889 14 Si 0.856 3.144 15 H -0.270 1.270 16 H -0.289 1.289 17 H -0.263 1.263 18 C -0.044 4.044 19 C -0.104 4.104 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.125 4.125 23 C -0.133 4.133 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.369 0.631 35 H 0.324 0.676 36 H 0.264 0.736 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 -5.276 9.754 11.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.036 3.964 4 C -0.193 4.193 5 C 0.011 3.989 6 O -0.373 6.373 7 N -0.292 5.292 8 C 0.100 3.900 9 H 0.045 0.955 10 C -0.511 4.511 11 H 0.098 0.902 12 C -0.126 4.126 13 N -0.527 5.527 14 Si 0.685 3.315 15 H -0.196 1.196 16 H -0.216 1.216 17 H -0.188 1.188 18 C -0.045 4.045 19 C -0.123 4.123 20 C -0.144 4.144 21 C -0.166 4.166 22 C -0.143 4.143 23 C -0.151 4.151 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.214 0.786 35 H 0.142 0.858 36 H 0.074 0.926 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.304 -4.916 8.872 10.402 hybrid contribution -0.908 -1.425 -0.051 1.691 sum -3.212 -6.341 8.822 11.329 Atomic orbital electron populations 1.21837 0.96381 1.00843 1.01641 1.22296 0.96012 0.99315 1.01640 1.20799 0.89613 0.92514 0.93520 1.22097 0.97423 1.02958 0.96862 1.22395 0.95275 0.96468 0.84811 1.86475 1.73424 1.61446 1.15974 1.61105 1.04111 1.59429 1.04530 1.18838 0.88008 0.93639 0.89490 0.95518 1.20797 1.29299 1.05196 0.95800 0.90180 1.25007 0.95725 0.95320 0.96587 1.69889 1.44157 1.29698 1.08933 0.87409 0.80723 0.85556 0.77852 1.19636 1.21570 1.18801 1.20637 0.98747 0.92151 0.92988 1.21017 0.92939 0.99835 0.98463 1.21064 0.97174 0.95622 1.00589 1.20873 0.99031 0.96323 1.00390 1.20948 0.94393 0.99535 0.99436 1.21087 0.97248 0.95898 1.00907 0.93600 0.92771 0.92521 0.92301 0.91917 0.90626 0.90606 0.94833 0.94021 0.93155 0.78594 0.85754 0.92595 0.85693 0.87133 0.87374 0.87303 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.22 37.16 0.34 -1.89 16 2 C -0.15 -2.72 4.80 -26.73 -0.13 -2.85 16 3 C 0.13 2.38 0.54 -131.59 -0.07 2.31 16 4 C -0.14 -2.82 6.54 37.16 0.24 -2.58 16 5 C 0.09 1.37 5.89 37.16 0.22 1.59 16 6 O -0.57 -8.20 12.46 -35.23 -0.44 -8.64 16 7 N -0.66 -13.66 5.46 -95.46 -0.52 -14.19 16 8 C 0.21 4.73 1.62 -70.02 -0.11 4.62 16 9 H 0.03 0.63 2.00 -51.93 -0.10 0.53 16 10 C -0.47 -12.64 7.54 -34.44 -0.26 -12.90 16 11 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 12 C 0.08 2.08 4.53 -17.82 -0.08 2.00 16 13 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 14 Si 0.86 20.70 24.76 -169.99 -4.21 16.49 16 15 H -0.27 -6.27 6.62 56.52 0.37 -5.90 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.26 -6.09 5.36 56.52 0.30 -5.79 16 18 C -0.04 -0.95 4.66 -104.62 -0.49 -1.44 16 19 C -0.10 -2.07 8.94 -39.58 -0.35 -2.42 16 20 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 21 C -0.15 -2.45 10.05 -39.59 -0.40 -2.85 16 22 C -0.12 -2.20 10.05 -39.59 -0.40 -2.60 16 23 C -0.13 -2.71 9.67 -39.59 -0.38 -3.09 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.72 6.31 -51.93 -0.33 0.40 16 26 H 0.06 0.87 6.60 -51.93 -0.34 0.53 16 27 H 0.06 1.16 6.14 -51.93 -0.32 0.84 16 28 H 0.06 1.10 7.83 -51.93 -0.41 0.69 16 29 H 0.07 1.71 7.88 -51.93 -0.41 1.30 16 30 H 0.08 1.74 2.12 -51.93 -0.11 1.63 16 31 H 0.03 0.60 6.82 -51.93 -0.35 0.24 16 32 H 0.04 0.57 6.16 -51.93 -0.32 0.25 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.37 3.49 9.12 45.56 0.42 3.90 16 35 H 0.32 6.50 7.22 -39.29 -0.28 6.22 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.13 2.49 7.83 -52.49 -0.41 2.08 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 41 H 0.11 2.27 6.75 -52.48 -0.35 1.92 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -29.37 309.40 -7.12 -36.49 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -5.12 Total: 15.11 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -2.27 Total: -24.68 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.25 Total: -39.43 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.44 Total: -8.64 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.21 Total: 16.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.37 -7.12 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080898964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.038 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds