Wall clock time and date at job start Mon Mar 30 2020 07:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47220 * 2 1 4 4 C 1.53009 * 109.46773 * 299.63374 * 3 2 1 5 5 C 1.53001 * 109.47119 * 59.63210 * 3 2 1 6 6 O 1.42900 * 109.47153 * 65.00375 * 5 3 2 7 7 N 1.46904 * 109.47230 * 179.63793 * 3 2 1 8 8 C 1.46893 * 111.00136 * 64.88262 * 7 3 2 9 9 H 1.08997 * 109.47380 * 330.31661 * 8 7 3 10 10 C 1.50700 * 109.47090 * 90.31330 * 8 7 3 11 11 H 1.08000 * 120.00002 * 56.60164 * 10 8 7 12 12 C 1.37878 * 120.00151 * 236.60387 * 10 8 7 13 13 N 1.31519 * 119.99955 * 172.19749 * 12 10 8 14 14 Si 1.86797 * 119.99996 * 352.19638 * 12 10 8 15 15 H 1.48498 * 109.47260 * 91.22931 * 14 12 10 16 16 H 1.48501 * 109.47283 * 211.23344 * 14 12 10 17 17 H 1.48504 * 109.46921 * 331.23106 * 14 12 10 18 18 C 1.50699 * 109.47039 * 210.31114 * 8 7 3 19 19 C 1.38237 * 120.00259 * 316.30644 * 18 8 7 20 20 C 1.38235 * 120.00141 * 179.80987 * 19 18 8 21 21 C 1.38233 * 119.99673 * 0.39899 * 20 19 18 22 22 C 1.38232 * 120.00134 * 359.85736 * 21 20 19 23 23 C 1.38228 * 120.00229 * 359.95400 * 22 21 20 24 24 H 1.09005 * 109.46635 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46715 * 300.00099 * 1 2 3 26 26 H 1.08997 * 109.47098 * 60.00288 * 1 2 3 27 27 H 1.09004 * 109.47158 * 239.99740 * 2 1 3 28 28 H 1.08997 * 109.47098 * 119.99712 * 2 1 3 29 29 H 1.09002 * 109.46885 * 186.83062 * 4 3 2 30 30 H 1.08996 * 109.47045 * 306.82597 * 4 3 2 31 31 H 1.08999 * 109.46977 * 66.82962 * 4 3 2 32 32 H 1.09000 * 109.47007 * 304.99772 * 5 3 2 33 33 H 1.09002 * 109.46793 * 185.00255 * 5 3 2 34 34 H 0.96696 * 114.00161 * 179.97438 * 6 5 3 35 35 H 1.00906 * 110.99244 * 300.92947 * 7 3 2 36 36 H 0.97003 * 119.99386 * 179.97438 * 13 12 10 37 37 H 1.07998 * 119.99350 * 0.02562 * 19 18 8 38 38 H 1.07996 * 119.99733 * 180.23425 * 20 19 18 39 39 H 1.08006 * 119.99645 * 179.83286 * 21 20 19 40 40 H 1.08011 * 119.99842 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.00042 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5375 2.1610 -1.2539 5 6 1.5225 2.1664 1.2446 6 8 2.0853 1.5665 2.4131 7 7 3.5091 1.4425 0.0088 8 6 4.0429 0.8578 -1.2285 9 1 3.3420 0.1164 -1.6120 10 6 4.2363 1.9442 -2.2549 11 1 4.8579 2.7975 -2.0274 12 6 3.6196 1.8488 -3.4843 13 7 3.6609 2.8626 -4.3212 14 14 2.7254 0.2797 -3.9615 15 1 1.2992 0.3813 -3.5607 16 1 2.8141 0.0867 -5.4313 17 1 3.3523 -0.8765 -3.2718 18 6 5.3664 0.1967 -0.9414 19 6 6.2991 0.8342 -0.1449 20 6 7.5115 0.2260 0.1216 21 6 7.7944 -1.0161 -0.4151 22 6 6.8638 -1.6513 -1.2159 23 6 5.6499 -1.0448 -1.4793 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.9976 3.1472 -1.3165 30 1 1.8030 1.5796 -2.1368 31 1 0.4541 2.2682 -1.2016 32 1 0.4359 2.0896 1.2841 33 1 1.8112 3.2166 1.2004 34 1 1.8006 1.9761 3.2415 35 1 3.8657 0.9600 0.8200 36 1 3.2273 2.7952 -5.1863 37 1 6.0792 1.8059 0.2719 38 1 8.2387 0.7224 0.7470 39 1 8.7428 -1.4901 -0.2090 40 1 7.0850 -2.6216 -1.6356 41 1 4.9229 -1.5409 -2.1053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080898964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:45 Heat of formation + Delta-G solvation = -42.102705 kcal Electronic energy + Delta-G solvation = -21166.724999 eV Core-core repulsion = 18238.651660 eV Total energy + Delta-G solvation = -2928.073338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61940 -39.38367 -36.84857 -35.06037 -33.83762 -31.74977 -31.46259 -29.66371 -28.85647 -26.64381 -24.74019 -24.19417 -23.22675 -21.52509 -19.75226 -18.92449 -18.13272 -17.88851 -16.99903 -16.39424 -16.22771 -15.79915 -15.54304 -15.30638 -14.87336 -14.52971 -14.17852 -14.03802 -13.91832 -13.62009 -13.49187 -13.17006 -12.98615 -12.88097 -12.52743 -12.41432 -12.12887 -12.01443 -11.76710 -11.67909 -11.58430 -11.30291 -11.17715 -10.73053 -10.62541 -9.67944 -9.39437 -8.85852 -8.27190 -6.21664 0.62873 0.67762 1.22251 1.27271 1.33203 2.26928 2.94449 3.15314 3.48743 3.57756 3.93935 4.03412 4.16182 4.24556 4.30192 4.37113 4.41228 4.46970 4.55575 4.61071 4.73214 4.79319 4.83552 4.90484 4.93140 4.99702 5.11023 5.16279 5.21819 5.25647 5.33578 5.47868 5.61523 5.66548 5.71254 5.74825 5.94906 6.19703 6.29753 6.61183 6.76220 6.98447 7.08129 7.37440 8.89801 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.010129 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.594796 B = 2763.688243 C = 3801.638925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.120 3.880 4 C -0.133 4.133 5 C 0.098 3.902 6 O -0.580 6.580 7 N -0.668 5.668 8 C 0.218 3.782 9 H 0.023 0.977 10 C -0.465 4.465 11 H 0.030 0.970 12 C 0.032 3.968 13 N -0.939 5.939 14 Si 0.907 3.093 15 H -0.255 1.255 16 H -0.294 1.294 17 H -0.249 1.249 18 C -0.075 4.075 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.137 4.137 22 C -0.123 4.123 23 C -0.153 4.153 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.393 0.607 35 H 0.330 0.670 36 H 0.263 0.737 37 H 0.112 0.888 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 -7.622 11.723 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C 0.028 3.972 4 C -0.190 4.190 5 C 0.020 3.980 6 O -0.388 6.388 7 N -0.299 5.299 8 C 0.110 3.890 9 H 0.040 0.960 10 C -0.504 4.504 11 H 0.048 0.952 12 C -0.166 4.166 13 N -0.580 5.580 14 Si 0.733 3.267 15 H -0.180 1.180 16 H -0.221 1.221 17 H -0.174 1.174 18 C -0.076 4.076 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.155 4.155 22 C -0.141 4.141 23 C -0.172 4.172 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.242 0.758 35 H 0.148 0.852 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.313 -7.269 10.892 13.297 hybrid contribution -0.785 -0.662 -0.530 1.156 sum -3.099 -7.931 10.362 13.411 Atomic orbital electron populations 1.21820 0.93964 1.02226 1.02315 1.22200 0.98112 0.97827 1.00552 1.20920 0.88307 0.93643 0.94329 1.22001 0.99020 1.00868 0.97158 1.22172 0.96522 0.95306 0.83999 1.86409 1.73800 1.61753 1.16798 1.60886 1.05828 1.59382 1.03761 1.18555 0.89141 0.92051 0.89290 0.95974 1.20833 1.27783 1.04791 0.97016 0.95177 1.25582 0.96645 0.97905 0.96451 1.70033 1.46430 1.31956 1.09581 0.86564 0.80605 0.82469 0.77061 1.18005 1.22081 1.17378 1.20592 0.98409 0.93474 0.95133 1.21032 0.94187 0.99642 0.99032 1.21426 0.96414 0.96013 1.00264 1.21359 1.00130 0.95576 0.98458 1.21330 0.93190 1.00647 0.98893 1.21189 0.98707 0.95868 1.01448 0.91981 0.90720 0.93131 0.94686 0.91619 0.93889 0.93006 0.92045 0.91291 0.93977 0.75810 0.85179 0.92746 0.86985 0.84052 0.83259 0.84107 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.22 71.98 0.66 -3.27 16 2 C -0.15 -5.01 4.80 30.60 0.15 -4.87 16 3 C 0.12 4.41 0.54 3.53 0.00 4.41 16 4 C -0.13 -5.58 6.54 71.99 0.47 -5.11 16 5 C 0.10 2.86 5.89 71.98 0.42 3.29 16 6 O -0.58 -15.33 12.46 -148.98 -1.86 -17.19 16 7 N -0.67 -28.13 5.46 -455.92 -2.49 -30.62 16 8 C 0.22 10.21 1.62 43.42 0.07 10.28 16 9 H 0.02 1.07 2.00 -2.39 0.00 1.07 16 10 C -0.47 -26.28 7.54 25.60 0.19 -26.08 16 11 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 12 C 0.03 1.83 4.53 84.65 0.38 2.21 16 13 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 14 Si 0.91 43.78 24.76 68.60 1.70 45.48 16 15 H -0.25 -11.54 6.62 99.48 0.66 -10.89 16 16 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 17 H -0.25 -11.37 5.36 99.48 0.53 -10.83 16 18 C -0.07 -3.27 4.66 -19.87 -0.09 -3.36 16 19 C -0.12 -4.79 8.94 22.27 0.20 -4.59 16 20 C -0.12 -3.96 10.05 22.27 0.22 -3.74 16 21 C -0.14 -4.01 10.05 22.27 0.22 -3.79 16 22 C -0.12 -3.96 10.05 22.27 0.22 -3.73 16 23 C -0.15 -6.13 9.67 22.27 0.22 -5.91 16 24 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.07 1.71 6.31 -2.39 -0.02 1.69 16 26 H 0.05 1.42 6.60 -2.39 -0.02 1.41 16 27 H 0.03 1.34 6.14 -2.38 -0.01 1.33 16 28 H 0.07 2.17 7.83 -2.39 -0.02 2.16 16 29 H 0.04 2.03 7.88 -2.39 -0.02 2.01 16 30 H 0.05 2.41 2.12 -2.39 -0.01 2.40 16 31 H 0.06 2.15 6.82 -2.39 -0.02 2.14 16 32 H 0.07 1.65 6.16 -2.39 -0.01 1.64 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.39 6.25 9.12 -74.06 -0.68 5.57 16 35 H 0.33 13.29 7.22 -89.69 -0.65 12.64 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 37 H 0.11 4.63 7.83 -2.91 -0.02 4.60 16 38 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 39 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.14 3.59 8.06 -2.90 -0.02 3.57 16 41 H 0.10 4.18 6.75 -2.91 -0.02 4.16 16 Total: -1.00 -67.62 309.40 0.51 -67.11 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.49 Total: 37.08 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 3.35 Total: -44.26 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -2.19 Total: -88.22 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.86 Total: -17.19 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.70 Total: 45.48 kcal Total: -67.62 0.51 -67.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080898964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.006 kcal (2) G-P(sol) polarization free energy of solvation -67.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds