Wall clock time and date at job start Mon Mar 30 2020 07:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46993 * 2 1 4 4 C 1.53008 * 109.46951 * 60.00252 * 3 2 1 5 5 O 1.42898 * 109.47659 * 300.00328 * 3 2 1 6 6 C 1.52997 * 109.47266 * 179.97438 * 3 2 1 7 7 N 1.46900 * 109.47616 * 185.00553 * 6 3 2 8 8 C 1.46891 * 111.00298 * 180.02562 * 7 6 3 9 9 H 1.09003 * 109.47218 * 324.99685 * 8 7 6 10 10 C 1.50706 * 109.47145 * 84.99843 * 8 7 6 11 11 H 1.08004 * 119.99815 * 234.79776 * 10 8 7 12 12 C 1.37876 * 120.00169 * 54.79865 * 10 8 7 13 13 N 1.31514 * 120.00093 * 2.51198 * 12 10 8 14 14 Si 1.86798 * 119.99876 * 182.51993 * 12 10 8 15 15 H 1.48504 * 109.47299 * 59.99769 * 14 12 10 16 16 H 1.48494 * 109.47177 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46983 * 299.99570 * 14 12 10 18 18 C 1.50702 * 109.47122 * 204.99285 * 8 7 6 19 19 C 1.38241 * 119.99718 * 150.22931 * 18 8 7 20 20 C 1.38235 * 119.99602 * 179.79713 * 19 18 8 21 21 C 1.38232 * 120.00268 * 0.42878 * 20 19 18 22 22 C 1.38234 * 119.99822 * 359.82242 * 21 20 19 23 23 C 1.38230 * 120.00110 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.47156 * 59.99894 * 1 2 3 25 25 H 1.08995 * 109.47057 * 299.99849 * 1 2 3 26 26 H 1.08994 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46868 * 119.99683 * 2 1 3 28 28 H 1.08995 * 109.47057 * 240.00151 * 2 1 3 29 29 H 1.08995 * 109.47143 * 59.99963 * 4 3 2 30 30 H 1.09007 * 109.47182 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46752 * 299.99596 * 4 3 2 32 32 H 0.96704 * 113.99810 * 300.00077 * 5 3 2 33 33 H 1.09004 * 109.47187 * 304.99879 * 6 3 2 34 34 H 1.08999 * 109.47213 * 65.00223 * 6 3 2 35 35 H 1.00910 * 110.99287 * 303.95638 * 7 6 3 36 36 H 0.96994 * 119.99940 * 180.02562 * 13 12 10 37 37 H 1.08000 * 120.00181 * 359.97438 * 19 18 8 38 38 H 1.08000 * 119.99902 * 180.27619 * 20 19 18 39 39 H 1.08001 * 120.00253 * 179.83884 * 21 20 19 40 40 H 1.08001 * 119.99980 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.00114 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2494 5 8 1.5637 2.1162 -1.1667 6 6 3.5700 1.4426 0.0006 7 7 4.0596 2.8223 0.1215 8 6 5.5280 2.8614 0.1249 9 1 5.9138 1.9813 0.6396 10 6 6.0335 2.8749 -1.2948 11 1 6.7427 2.1292 -1.6226 12 6 5.5906 3.8392 -2.1752 13 7 4.7653 4.7765 -1.7631 14 14 6.1627 3.8140 -3.9532 15 1 5.7537 2.5347 -4.5868 16 1 5.5469 4.9484 -4.6874 17 1 7.6417 3.9386 -3.9991 18 6 5.9958 4.1048 0.8364 19 6 7.2048 4.1041 1.5067 20 6 7.6358 5.2460 2.1558 21 6 6.8537 6.3857 2.1421 22 6 5.6423 6.3847 1.4763 23 6 5.2133 5.2442 0.8237 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 1.6499 2.1393 30 1 1.8937 3.1913 1.2496 31 1 0.4399 2.1637 1.2493 32 1 1.8490 1.7128 -1.9979 33 1 3.9330 0.8533 0.8427 34 1 3.9337 1.0082 -0.9305 35 1 3.6843 3.4046 -0.6122 36 1 4.4534 5.4546 -2.3825 37 1 7.8140 3.2124 1.5207 38 1 8.5824 5.2468 2.6756 39 1 7.1893 7.2770 2.6515 40 1 5.0311 7.2751 1.4660 41 1 4.2670 5.2436 0.3031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087027874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:48 Heat of formation + Delta-G solvation = -34.619826 kcal Electronic energy + Delta-G solvation = -20712.964453 eV Core-core repulsion = 17785.215597 eV Total energy + Delta-G solvation = -2927.748856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.50831 -37.89742 -35.01505 -32.83190 -31.84285 -30.38138 -29.63724 -28.53042 -26.54072 -25.26340 -23.00281 -21.89717 -21.03237 -19.79528 -19.57144 -16.54496 -16.15252 -15.63327 -15.03988 -14.83348 -14.72508 -13.90657 -13.77773 -13.68874 -13.02773 -12.74051 -12.26259 -12.18900 -11.90483 -11.86562 -11.71320 -11.52002 -11.47391 -11.22924 -11.00324 -10.92880 -10.75410 -10.68188 -10.37944 -10.04042 -10.00359 -9.67455 -9.47807 -9.17264 -8.66675 -7.74617 -7.37709 -6.97143 -6.01900 -4.29908 2.57801 2.69428 3.21222 3.27919 3.29928 4.29398 4.71269 5.00549 5.11697 5.15333 5.23652 5.40737 5.68163 5.75962 5.87772 5.88678 5.98612 6.05459 6.06671 6.17427 6.23855 6.29097 6.38797 6.49047 6.50500 6.56544 6.70127 6.77458 6.90375 6.95696 6.98430 7.21840 7.35786 7.59289 7.66974 7.84144 8.01930 8.10305 8.22248 8.31379 8.45066 8.85699 9.18909 9.43339 10.82352 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.007676 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.655542 B = 3646.948665 C = 4761.108541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.149 4.149 3 C 0.132 3.868 4 C -0.125 4.125 5 O -0.554 6.554 6 C 0.044 3.956 7 N -0.681 5.681 8 C 0.237 3.763 9 H 0.032 0.968 10 C -0.544 4.544 11 H 0.055 0.945 12 C 0.074 3.926 13 N -0.872 5.872 14 Si 0.892 3.108 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.278 1.278 18 C -0.017 4.017 19 C -0.136 4.136 20 C -0.144 4.144 21 C -0.154 4.154 22 C -0.148 4.148 23 C -0.051 4.051 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.368 0.632 33 H 0.055 0.945 34 H 0.024 0.976 35 H 0.372 0.628 36 H 0.267 0.733 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 -4.502 3.902 7.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.091 3.909 4 C -0.182 4.182 5 O -0.359 6.359 6 C -0.087 4.087 7 N -0.319 5.319 8 C 0.129 3.871 9 H 0.050 0.950 10 C -0.583 4.583 11 H 0.073 0.927 12 C -0.130 4.130 13 N -0.509 5.509 14 Si 0.720 3.280 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.203 1.203 18 C -0.018 4.018 19 C -0.155 4.155 20 C -0.163 4.163 21 C -0.172 4.172 22 C -0.167 4.167 23 C -0.070 4.070 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.215 0.785 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.199 0.801 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.996 -3.920 4.949 8.051 hybrid contribution 1.150 -0.484 -2.480 2.776 sum -3.846 -4.404 2.469 6.347 Atomic orbital electron populations 1.21717 0.95654 1.00524 1.02463 1.22190 0.96605 0.97837 1.02093 1.21299 0.92953 0.89893 0.86716 1.21587 0.99469 1.02640 0.94525 1.86538 1.76587 1.57340 1.15441 1.22337 0.93153 0.94000 0.99206 1.60913 1.09272 1.06825 1.54886 1.18076 0.85909 0.90265 0.92900 0.95002 1.21654 1.27513 1.13855 0.95270 0.92704 1.24979 0.94816 0.94417 0.98779 1.69584 1.32259 1.14347 1.34755 0.86649 0.79129 0.77537 0.84665 1.20369 1.21055 1.20332 1.20180 0.92594 0.97542 0.91499 1.20833 0.97214 0.97524 0.99909 1.20731 0.99172 0.94053 1.02320 1.20751 0.96287 0.97426 1.02729 1.21093 0.96684 0.98590 1.00285 1.21343 1.01239 0.90834 0.93537 0.92287 0.92511 0.93649 0.91509 0.92248 0.92245 0.90339 0.93434 0.78529 0.92678 0.95824 0.80098 0.92192 0.88023 0.88241 0.88416 0.88180 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.41 37.16 0.35 -1.42 16 2 C -0.15 -1.99 5.17 -26.73 -0.14 -2.13 16 3 C 0.13 2.15 0.85 -90.62 -0.08 2.08 16 4 C -0.13 -2.01 8.28 37.16 0.31 -1.71 16 5 O -0.55 -9.71 11.83 -35.23 -0.42 -10.13 16 6 C 0.04 0.84 4.65 -3.83 -0.02 0.82 16 7 N -0.68 -15.05 4.41 -109.19 -0.48 -15.53 16 8 C 0.24 5.67 2.50 -70.02 -0.18 5.50 16 9 H 0.03 0.75 7.74 -51.93 -0.40 0.35 16 10 C -0.54 -14.04 8.62 -34.44 -0.30 -14.33 16 11 H 0.05 1.43 7.81 -52.48 -0.41 1.02 16 12 C 0.07 1.88 5.05 -17.82 -0.09 1.79 16 13 N -0.87 -22.26 7.97 55.43 0.44 -21.81 16 14 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.02 -0.40 4.79 -104.62 -0.50 -0.90 16 19 C -0.14 -2.98 9.70 -39.58 -0.38 -3.36 16 20 C -0.14 -2.88 10.05 -39.58 -0.40 -3.27 16 21 C -0.15 -3.03 10.05 -39.58 -0.40 -3.42 16 22 C -0.15 -3.13 10.05 -39.59 -0.40 -3.52 16 23 C -0.05 -1.19 7.66 -39.59 -0.30 -1.50 16 24 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 25 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.46 7.47 -51.93 -0.39 1.07 16 31 H 0.05 0.70 6.43 -51.93 -0.33 0.36 16 32 H 0.37 5.63 9.05 45.56 0.41 6.04 16 33 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 34 H 0.02 0.48 8.00 -51.93 -0.42 0.06 16 35 H 0.37 8.94 5.08 -39.29 -0.20 8.74 16 36 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 37 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 41 H 0.15 3.58 5.59 -52.48 -0.29 3.29 16 LS Contribution 324.38 15.07 4.89 4.89 Total: -1.00 -26.44 324.38 -8.81 -35.24 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -5.70 Total: 17.35 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -2.52 Total: -25.38 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.04 Total: -37.35 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.42 Total: -10.13 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.44 -8.81 -35.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087027874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.625 kcal (2) G-P(sol) polarization free energy of solvation -26.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds