Wall clock time and date at job start Mon Mar 30 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46993 * 2 1 4 4 C 1.53008 * 109.46951 * 60.00252 * 3 2 1 5 5 O 1.42898 * 109.47659 * 300.00328 * 3 2 1 6 6 C 1.52997 * 109.47266 * 179.97438 * 3 2 1 7 7 N 1.46900 * 109.47616 * 185.00553 * 6 3 2 8 8 C 1.46891 * 111.00298 * 180.02562 * 7 6 3 9 9 H 1.09003 * 109.47218 * 324.99685 * 8 7 6 10 10 C 1.50706 * 109.47145 * 84.99843 * 8 7 6 11 11 H 1.08004 * 119.99815 * 234.79776 * 10 8 7 12 12 C 1.37876 * 120.00169 * 54.79865 * 10 8 7 13 13 N 1.31514 * 120.00093 * 2.51198 * 12 10 8 14 14 Si 1.86798 * 119.99876 * 182.51993 * 12 10 8 15 15 H 1.48504 * 109.47299 * 59.99769 * 14 12 10 16 16 H 1.48494 * 109.47177 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46983 * 299.99570 * 14 12 10 18 18 C 1.50702 * 109.47122 * 204.99285 * 8 7 6 19 19 C 1.38241 * 119.99718 * 150.22931 * 18 8 7 20 20 C 1.38235 * 119.99602 * 179.79713 * 19 18 8 21 21 C 1.38232 * 120.00268 * 0.42878 * 20 19 18 22 22 C 1.38234 * 119.99822 * 359.82242 * 21 20 19 23 23 C 1.38230 * 120.00110 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.47156 * 59.99894 * 1 2 3 25 25 H 1.08995 * 109.47057 * 299.99849 * 1 2 3 26 26 H 1.08994 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46868 * 119.99683 * 2 1 3 28 28 H 1.08995 * 109.47057 * 240.00151 * 2 1 3 29 29 H 1.08995 * 109.47143 * 59.99963 * 4 3 2 30 30 H 1.09007 * 109.47182 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46752 * 299.99596 * 4 3 2 32 32 H 0.96704 * 113.99810 * 300.00077 * 5 3 2 33 33 H 1.09004 * 109.47187 * 304.99879 * 6 3 2 34 34 H 1.08999 * 109.47213 * 65.00223 * 6 3 2 35 35 H 1.00910 * 110.99287 * 303.95638 * 7 6 3 36 36 H 0.96994 * 119.99940 * 180.02562 * 13 12 10 37 37 H 1.08000 * 120.00181 * 359.97438 * 19 18 8 38 38 H 1.08000 * 119.99902 * 180.27619 * 20 19 18 39 39 H 1.08001 * 120.00253 * 179.83884 * 21 20 19 40 40 H 1.08001 * 119.99980 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.00114 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2494 5 8 1.5637 2.1162 -1.1667 6 6 3.5700 1.4426 0.0006 7 7 4.0596 2.8223 0.1215 8 6 5.5280 2.8614 0.1249 9 1 5.9138 1.9813 0.6396 10 6 6.0335 2.8749 -1.2948 11 1 6.7427 2.1292 -1.6226 12 6 5.5906 3.8392 -2.1752 13 7 4.7653 4.7765 -1.7631 14 14 6.1627 3.8140 -3.9532 15 1 5.7537 2.5347 -4.5868 16 1 5.5469 4.9484 -4.6874 17 1 7.6417 3.9386 -3.9991 18 6 5.9958 4.1048 0.8364 19 6 7.2048 4.1041 1.5067 20 6 7.6358 5.2460 2.1558 21 6 6.8537 6.3857 2.1421 22 6 5.6423 6.3847 1.4763 23 6 5.2133 5.2442 0.8237 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 1.6499 2.1393 30 1 1.8937 3.1913 1.2496 31 1 0.4399 2.1637 1.2493 32 1 1.8490 1.7128 -1.9979 33 1 3.9330 0.8533 0.8427 34 1 3.9337 1.0082 -0.9305 35 1 3.6843 3.4046 -0.6122 36 1 4.4534 5.4546 -2.3825 37 1 7.8140 3.2124 1.5207 38 1 8.5824 5.2468 2.6756 39 1 7.1893 7.2770 2.6515 40 1 5.0311 7.2751 1.4660 41 1 4.2670 5.2436 0.3031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087027874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:47 Heat of formation + Delta-G solvation = -49.690721 kcal Electronic energy + Delta-G solvation = -20713.617976 eV Core-core repulsion = 17785.215597 eV Total energy + Delta-G solvation = -2928.402379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06020 -39.38273 -36.73241 -34.17309 -33.57156 -31.97987 -31.27931 -29.91073 -28.27145 -26.76450 -24.61137 -23.42058 -22.60515 -21.49369 -20.93772 -18.44252 -17.73389 -17.05726 -16.77399 -16.22145 -16.17713 -15.57707 -15.35467 -15.19320 -14.51587 -14.37499 -13.83825 -13.71653 -13.51370 -13.22598 -13.15243 -13.00311 -12.84404 -12.75889 -12.71122 -12.55603 -12.33561 -12.14292 -11.79654 -11.75193 -11.49786 -11.29344 -11.17885 -10.70044 -10.45145 -9.41386 -9.09364 -8.75599 -7.92196 -6.29662 0.89852 1.04385 1.37186 1.40275 1.45789 2.38670 3.09728 3.39500 3.44201 3.80911 4.08396 4.17519 4.29045 4.39419 4.40927 4.49565 4.63004 4.70421 4.79159 4.82702 4.87694 4.97057 5.05555 5.07708 5.12328 5.17773 5.21393 5.25264 5.36724 5.47505 5.54311 5.63185 5.65128 5.72216 5.93801 6.09806 6.12093 6.39181 6.53644 6.62811 6.93368 7.01218 7.30082 7.47754 8.85367 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.007676 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.655542 B = 3646.948665 C = 4761.108541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.142 4.142 3 C 0.135 3.865 4 C -0.121 4.121 5 O -0.570 6.570 6 C 0.043 3.957 7 N -0.679 5.679 8 C 0.237 3.763 9 H 0.022 0.978 10 C -0.564 4.564 11 H 0.041 0.959 12 C 0.042 3.958 13 N -0.877 5.877 14 Si 0.943 3.057 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.284 1.284 18 C -0.043 4.043 19 C -0.153 4.153 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.070 4.070 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.376 0.624 33 H 0.060 0.940 34 H 0.007 0.993 35 H 0.362 0.638 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 -4.371 4.595 7.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.180 4.180 3 C 0.095 3.905 4 C -0.179 4.179 5 O -0.376 6.376 6 C -0.087 4.087 7 N -0.315 5.315 8 C 0.128 3.872 9 H 0.041 0.959 10 C -0.603 4.603 11 H 0.059 0.941 12 C -0.161 4.161 13 N -0.514 5.514 14 Si 0.769 3.231 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.210 1.210 18 C -0.044 4.044 19 C -0.171 4.171 20 C -0.159 4.159 21 C -0.167 4.167 22 C -0.174 4.174 23 C -0.089 4.089 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.223 0.777 33 H 0.079 0.921 34 H 0.025 0.975 35 H 0.186 0.814 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.137 0.863 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.938 -3.803 5.651 8.413 hybrid contribution 1.164 -0.507 -2.638 2.928 sum -3.773 -4.310 3.013 6.473 Atomic orbital electron populations 1.21684 0.94330 1.01780 1.02132 1.22118 0.97637 0.95399 1.02895 1.21319 0.90839 0.91936 0.86439 1.21555 1.00400 1.00911 0.94984 1.86513 1.76614 1.58252 1.16204 1.22453 0.95385 0.92397 0.98495 1.60917 1.08221 1.08220 1.54176 1.18031 0.86832 0.90343 0.92031 0.95929 1.21789 1.27781 1.13977 0.96742 0.94088 1.25465 0.95028 0.94253 1.01346 1.69731 1.32275 1.14211 1.35157 0.85870 0.78134 0.77601 0.81448 1.19922 1.20730 1.21002 1.20278 0.93755 0.97513 0.92885 1.21064 0.96827 0.98903 1.00328 1.21134 1.00348 0.93159 1.01260 1.21166 0.95245 0.98649 1.01647 1.21364 0.97730 0.98419 0.99887 1.21218 1.00821 0.91975 0.94859 0.93103 0.92345 0.91608 0.90393 0.91806 0.91011 0.93320 0.91889 0.77690 0.92150 0.97460 0.81361 0.92495 0.87381 0.84782 0.84711 0.86276 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.41 71.98 0.68 -2.45 16 2 C -0.14 -3.58 5.17 30.59 0.16 -3.42 16 3 C 0.14 4.37 0.85 -10.79 -0.01 4.36 16 4 C -0.12 -3.86 8.28 71.98 0.60 -3.27 16 5 O -0.57 -20.06 11.83 -148.98 -1.76 -21.83 16 6 C 0.04 1.69 4.65 86.30 0.40 2.09 16 7 N -0.68 -31.00 4.41 -499.36 -2.20 -33.21 16 8 C 0.24 11.68 2.50 43.43 0.11 11.79 16 9 H 0.02 1.11 7.74 -2.39 -0.02 1.09 16 10 C -0.56 -29.89 8.62 25.60 0.22 -29.67 16 11 H 0.04 2.21 7.81 -2.91 -0.02 2.19 16 12 C 0.04 2.17 5.05 84.65 0.43 2.60 16 13 N -0.88 -45.60 7.97 21.45 0.17 -45.43 16 14 Si 0.94 42.26 29.54 68.60 2.03 44.28 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C -0.04 -2.08 4.79 -19.86 -0.10 -2.17 16 19 C -0.15 -6.60 9.70 22.27 0.22 -6.38 16 20 C -0.14 -5.26 10.05 22.27 0.22 -5.03 16 21 C -0.15 -5.44 10.05 22.27 0.22 -5.21 16 22 C -0.16 -6.38 10.05 22.27 0.22 -6.16 16 23 C -0.07 -3.31 7.66 22.27 0.17 -3.14 16 24 H 0.05 1.20 7.68 -2.38 -0.02 1.18 16 25 H 0.06 1.26 6.43 -2.39 -0.02 1.25 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.05 1.84 7.47 -2.38 -0.02 1.82 16 31 H 0.06 1.78 6.43 -2.38 -0.02 1.77 16 32 H 0.38 11.62 9.05 -74.05 -0.67 10.95 16 33 H 0.06 2.24 8.06 -2.39 -0.02 2.22 16 34 H 0.01 0.30 8.00 -2.39 -0.02 0.28 16 35 H 0.36 17.98 5.08 -89.69 -0.46 17.52 16 36 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 37 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 38 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 40 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 41 H 0.12 6.31 5.59 -2.91 -0.02 6.29 16 Total: -1.00 -56.86 324.38 1.67 -55.20 By element: Atomic # 1 Polarization: 47.17 SS G_CDS: -0.11 Total: 47.06 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 3.54 Total: -46.08 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.03 Total: -78.63 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -1.76 Total: -21.83 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -56.86 1.67 -55.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087027874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.507 kcal (2) G-P(sol) polarization free energy of solvation -56.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds