Wall clock time and date at job start Mon Mar 30 2020 07:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46813 * 2 1 4 4 C 1.53004 * 109.46846 * 304.99738 * 3 2 1 5 5 O 1.42900 * 109.47031 * 64.99578 * 3 2 1 6 6 C 1.52994 * 109.46837 * 184.99808 * 3 2 1 7 7 N 1.46898 * 109.47116 * 179.97438 * 6 3 2 8 8 C 1.46897 * 111.00113 * 180.02562 * 7 6 3 9 9 H 1.09000 * 109.47164 * 324.99871 * 8 7 6 10 10 C 1.50707 * 109.47216 * 85.00000 * 8 7 6 11 11 H 1.07998 * 119.99902 * 58.82370 * 10 8 7 12 12 C 1.37875 * 119.99656 * 238.81966 * 10 8 7 13 13 N 1.31513 * 119.99586 * 187.56462 * 12 10 8 14 14 Si 1.86801 * 120.00419 * 7.56869 * 12 10 8 15 15 H 1.48495 * 109.47058 * 275.18233 * 14 12 10 16 16 H 1.48507 * 109.46774 * 35.17988 * 14 12 10 17 17 H 1.48501 * 109.47001 * 155.17851 * 14 12 10 18 18 C 1.50707 * 109.47049 * 204.99963 * 8 7 6 19 19 C 1.38229 * 119.99870 * 314.05446 * 18 8 7 20 20 C 1.38238 * 119.99917 * 179.78641 * 19 18 8 21 21 C 1.38236 * 119.99750 * 0.44466 * 20 19 18 22 22 C 1.38233 * 120.00057 * 359.80993 * 21 20 19 23 23 C 1.38227 * 119.99921 * 359.97438 * 22 21 20 24 24 H 1.09006 * 109.47067 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47662 * 300.00123 * 1 2 3 26 26 H 1.08995 * 109.47400 * 60.00445 * 1 2 3 27 27 H 1.08999 * 109.47151 * 239.99757 * 2 1 3 28 28 H 1.09001 * 109.46759 * 119.99765 * 2 1 3 29 29 H 1.08999 * 109.46662 * 300.00042 * 4 3 2 30 30 H 1.08999 * 109.47059 * 60.00613 * 4 3 2 31 31 H 1.09000 * 109.46995 * 179.97438 * 4 3 2 32 32 H 0.96705 * 113.99976 * 60.00480 * 5 3 2 33 33 H 1.09005 * 109.47481 * 59.99887 * 6 3 2 34 34 H 1.09000 * 109.47508 * 299.99822 * 6 3 2 35 35 H 1.00901 * 111.00136 * 303.95643 * 7 6 3 36 36 H 0.97005 * 120.00100 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.00259 * 0.02562 * 19 18 8 38 38 H 1.08002 * 120.00081 * 180.27339 * 20 19 18 39 39 H 1.08002 * 119.99796 * 179.82684 * 21 20 19 40 40 H 1.08001 * 119.99894 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00335 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 8 1.6618 2.0814 1.2210 6 6 3.5647 1.4444 -0.1257 7 7 4.0543 2.8294 -0.1263 8 6 5.5178 2.8704 -0.2464 9 1 5.9499 2.0224 0.2851 10 6 5.9046 2.8013 -1.7014 11 1 5.5495 3.5529 -2.3908 12 6 6.7119 1.7786 -2.1522 13 7 7.1712 1.7980 -3.3844 14 14 7.1532 0.3654 -1.0130 15 1 8.3285 0.7434 -0.1878 16 1 6.0007 0.0668 -0.1255 17 1 7.4811 -0.8371 -1.8202 18 6 6.0351 4.1538 0.3505 19 6 5.4201 5.3541 0.0475 20 6 5.8918 6.5309 0.5986 21 6 6.9842 6.5084 1.4453 22 6 7.6025 5.3086 1.7442 23 6 7.1280 4.1314 1.1967 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7183 1.7117 -2.1130 30 1 0.3436 2.1978 -1.0921 31 1 1.7928 3.2269 -1.1815 32 1 2.0140 1.6543 2.0139 33 1 3.8532 0.9570 -1.0571 34 1 3.9994 0.9054 0.7162 35 1 3.6165 3.3674 -0.8591 36 1 7.7390 1.0783 -3.7018 37 1 4.5686 5.3721 -0.6167 38 1 5.4086 7.4682 0.3653 39 1 7.3545 7.4281 1.8736 40 1 8.4562 5.2911 2.4054 41 1 7.6112 3.1941 1.4298 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087027875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:50 Heat of formation + Delta-G solvation = -37.889730 kcal Electronic energy + Delta-G solvation = -20423.189137 eV Core-core repulsion = 17495.298487 eV Total energy + Delta-G solvation = -2927.890650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.79515 -38.21113 -35.17729 -32.97217 -32.26641 -30.83645 -30.14157 -28.72829 -26.87363 -25.55732 -23.07477 -22.22986 -21.49993 -19.81349 -19.66492 -17.33698 -16.33950 -15.87643 -15.19434 -15.06455 -14.74907 -14.37298 -14.04744 -13.73063 -13.36612 -12.87854 -12.71214 -12.62854 -12.19145 -12.12417 -11.93119 -11.89047 -11.76122 -11.62748 -11.25471 -11.11244 -10.94784 -10.78939 -10.42500 -10.30297 -10.14577 -9.84153 -9.45745 -9.34258 -8.76638 -8.17784 -7.89985 -7.26133 -6.28147 -4.29204 2.15397 2.22104 3.13706 3.20535 3.22982 4.22442 4.49522 4.62892 4.93944 5.07826 5.10301 5.23394 5.43990 5.51031 5.56678 5.60550 5.69942 5.75469 5.77337 5.99079 6.03167 6.09757 6.17930 6.22257 6.28680 6.34086 6.37323 6.42664 6.44247 6.49865 6.68679 6.78436 6.87328 7.18111 7.27623 7.37687 7.55246 7.80221 7.95367 8.09435 8.25921 8.51119 8.77660 9.34356 10.84362 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.007753 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.374916 B = 3610.813947 C = 4811.795157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.151 4.151 3 C 0.134 3.866 4 C -0.140 4.140 5 O -0.548 6.548 6 C 0.041 3.959 7 N -0.676 5.676 8 C 0.205 3.795 9 H 0.048 0.952 10 C -0.536 4.536 11 H 0.077 0.923 12 C 0.080 3.920 13 N -0.886 5.886 14 Si 0.869 3.131 15 H -0.273 1.273 16 H -0.262 1.262 17 H -0.287 1.287 18 C -0.014 4.014 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.133 4.133 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.368 0.632 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.334 0.666 36 H 0.266 0.734 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -0.339 7.980 11.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.093 3.907 4 C -0.197 4.197 5 O -0.353 6.353 6 C -0.090 4.090 7 N -0.307 5.307 8 C 0.097 3.903 9 H 0.065 0.935 10 C -0.574 4.574 11 H 0.095 0.905 12 C -0.125 4.125 13 N -0.522 5.522 14 Si 0.696 3.304 15 H -0.199 1.199 16 H -0.187 1.187 17 H -0.213 1.213 18 C -0.015 4.015 19 C -0.120 4.120 20 C -0.143 4.143 21 C -0.169 4.169 22 C -0.141 4.141 23 C -0.151 4.151 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.214 0.786 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.784 0.005 8.092 11.229 hybrid contribution 1.053 -1.511 -0.211 1.854 sum -6.732 -1.506 7.882 10.474 Atomic orbital electron populations 1.21742 0.95476 1.00802 1.02399 1.22197 0.96757 0.97504 1.02428 1.21233 0.93126 0.90556 0.85778 1.21769 1.00629 1.01351 0.95964 1.86510 1.76290 1.57489 1.14967 1.22448 0.93400 0.92514 1.00587 1.60992 1.07213 1.09922 1.52523 1.18624 0.85711 0.90837 0.95102 0.93450 1.21527 1.31936 1.12124 0.91853 0.90499 1.25105 0.94490 0.97899 0.94972 1.69920 1.32862 1.32878 1.16555 0.87010 0.79566 0.82568 0.81241 1.19890 1.18664 1.21339 1.20234 0.93243 0.96455 0.91549 1.20811 0.99803 0.91802 0.99537 1.21018 0.97185 0.97745 0.98380 1.20834 0.97882 0.97187 1.00996 1.20914 0.99707 0.92929 1.00577 1.20924 0.97779 0.97601 0.98843 0.93457 0.92282 0.92400 0.91251 0.92072 0.91459 0.92224 0.91353 0.78572 0.94059 0.92403 0.84698 0.92386 0.86811 0.87272 0.87440 0.87331 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.32 37.16 0.35 -1.32 16 2 C -0.15 -1.94 5.20 -26.73 -0.14 -2.08 16 3 C 0.13 2.02 0.85 -90.62 -0.08 1.94 16 4 C -0.14 -2.06 8.02 37.16 0.30 -1.77 16 5 O -0.55 -8.32 12.38 -35.23 -0.44 -8.75 16 6 C 0.04 0.75 4.25 -3.83 -0.02 0.73 16 7 N -0.68 -13.54 5.68 -109.19 -0.62 -14.17 16 8 C 0.21 4.65 2.15 -70.01 -0.15 4.50 16 9 H 0.05 1.11 4.23 -51.93 -0.22 0.89 16 10 C -0.54 -14.15 8.58 -34.44 -0.30 -14.44 16 11 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 14 Si 0.87 20.48 26.96 -169.99 -4.58 15.90 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.26 -5.79 6.13 56.52 0.35 -5.45 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 C -0.01 -0.29 4.93 -104.62 -0.52 -0.81 16 19 C -0.10 -2.02 9.27 -39.58 -0.37 -2.39 16 20 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 21 C -0.15 -2.53 10.05 -39.58 -0.40 -2.93 16 22 C -0.12 -2.17 10.05 -39.59 -0.40 -2.57 16 23 C -0.13 -2.69 9.67 -39.59 -0.38 -3.07 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.68 7.82 -51.93 -0.41 0.27 16 26 H 0.06 0.65 6.34 -51.93 -0.33 0.32 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.79 6.34 -51.93 -0.33 0.46 16 31 H 0.07 1.07 6.57 -51.93 -0.34 0.73 16 32 H 0.37 4.59 9.05 45.56 0.41 5.00 16 33 H 0.04 0.84 8.00 -51.93 -0.42 0.43 16 34 H 0.06 1.06 7.82 -51.93 -0.41 0.66 16 35 H 0.33 6.74 5.96 -39.29 -0.23 6.51 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.11 2.22 7.46 -52.48 -0.39 1.83 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.11 2.11 8.00 -52.49 -0.42 1.69 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -29.20 327.88 -8.17 -37.37 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -5.65 Total: 14.61 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -2.59 Total: -24.71 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.15 Total: -39.35 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.44 Total: -8.75 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.58 Total: 15.90 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.20 -8.17 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087027875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.521 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds