Wall clock time and date at job start Mon Mar 30 2020 07:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46813 * 2 1 4 4 C 1.53004 * 109.46846 * 304.99738 * 3 2 1 5 5 O 1.42900 * 109.47031 * 64.99578 * 3 2 1 6 6 C 1.52994 * 109.46837 * 184.99808 * 3 2 1 7 7 N 1.46898 * 109.47116 * 179.97438 * 6 3 2 8 8 C 1.46897 * 111.00113 * 180.02562 * 7 6 3 9 9 H 1.09000 * 109.47164 * 324.99871 * 8 7 6 10 10 C 1.50707 * 109.47216 * 85.00000 * 8 7 6 11 11 H 1.07998 * 119.99902 * 58.82370 * 10 8 7 12 12 C 1.37875 * 119.99656 * 238.81966 * 10 8 7 13 13 N 1.31513 * 119.99586 * 187.56462 * 12 10 8 14 14 Si 1.86801 * 120.00419 * 7.56869 * 12 10 8 15 15 H 1.48495 * 109.47058 * 275.18233 * 14 12 10 16 16 H 1.48507 * 109.46774 * 35.17988 * 14 12 10 17 17 H 1.48501 * 109.47001 * 155.17851 * 14 12 10 18 18 C 1.50707 * 109.47049 * 204.99963 * 8 7 6 19 19 C 1.38229 * 119.99870 * 314.05446 * 18 8 7 20 20 C 1.38238 * 119.99917 * 179.78641 * 19 18 8 21 21 C 1.38236 * 119.99750 * 0.44466 * 20 19 18 22 22 C 1.38233 * 120.00057 * 359.80993 * 21 20 19 23 23 C 1.38227 * 119.99921 * 359.97438 * 22 21 20 24 24 H 1.09006 * 109.47067 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47662 * 300.00123 * 1 2 3 26 26 H 1.08995 * 109.47400 * 60.00445 * 1 2 3 27 27 H 1.08999 * 109.47151 * 239.99757 * 2 1 3 28 28 H 1.09001 * 109.46759 * 119.99765 * 2 1 3 29 29 H 1.08999 * 109.46662 * 300.00042 * 4 3 2 30 30 H 1.08999 * 109.47059 * 60.00613 * 4 3 2 31 31 H 1.09000 * 109.46995 * 179.97438 * 4 3 2 32 32 H 0.96705 * 113.99976 * 60.00480 * 5 3 2 33 33 H 1.09005 * 109.47481 * 59.99887 * 6 3 2 34 34 H 1.09000 * 109.47508 * 299.99822 * 6 3 2 35 35 H 1.00901 * 111.00136 * 303.95643 * 7 6 3 36 36 H 0.97005 * 120.00100 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.00259 * 0.02562 * 19 18 8 38 38 H 1.08002 * 120.00081 * 180.27339 * 20 19 18 39 39 H 1.08002 * 119.99796 * 179.82684 * 21 20 19 40 40 H 1.08001 * 119.99894 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00335 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 8 1.6618 2.0814 1.2210 6 6 3.5647 1.4444 -0.1257 7 7 4.0543 2.8294 -0.1263 8 6 5.5178 2.8704 -0.2464 9 1 5.9499 2.0224 0.2851 10 6 5.9046 2.8013 -1.7014 11 1 5.5495 3.5529 -2.3908 12 6 6.7119 1.7786 -2.1522 13 7 7.1712 1.7980 -3.3844 14 14 7.1532 0.3654 -1.0130 15 1 8.3285 0.7434 -0.1878 16 1 6.0007 0.0668 -0.1255 17 1 7.4811 -0.8371 -1.8202 18 6 6.0351 4.1538 0.3505 19 6 5.4201 5.3541 0.0475 20 6 5.8918 6.5309 0.5986 21 6 6.9842 6.5084 1.4453 22 6 7.6025 5.3086 1.7442 23 6 7.1280 4.1314 1.1967 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7183 1.7117 -2.1130 30 1 0.3436 2.1978 -1.0921 31 1 1.7928 3.2269 -1.1815 32 1 2.0140 1.6543 2.0139 33 1 3.8532 0.9570 -1.0571 34 1 3.9994 0.9054 0.7162 35 1 3.6165 3.3674 -0.8591 36 1 7.7390 1.0783 -3.7018 37 1 4.5686 5.3721 -0.6167 38 1 5.4086 7.4682 0.3653 39 1 7.3545 7.4281 1.8736 40 1 8.4562 5.2911 2.4054 41 1 7.6112 3.1941 1.4298 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087027875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:50 Heat of formation + Delta-G solvation = -57.684638 kcal Electronic energy + Delta-G solvation = -20424.047509 eV Core-core repulsion = 17495.298487 eV Total energy + Delta-G solvation = -2928.749022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24704 -39.51914 -36.79743 -34.38980 -33.98084 -32.28264 -31.58386 -30.00504 -28.53808 -27.04680 -24.63003 -23.64286 -22.89130 -21.37773 -20.95560 -19.32080 -17.81457 -17.12880 -16.84415 -16.36842 -16.19400 -15.94454 -15.45910 -15.13095 -14.90570 -14.49254 -14.21481 -14.04819 -13.75648 -13.66564 -13.32587 -13.15485 -13.00012 -12.88716 -12.85004 -12.53851 -12.49014 -12.05381 -11.86168 -11.77367 -11.70522 -11.39380 -11.22240 -10.90389 -10.54445 -9.63378 -9.42493 -8.96053 -8.39951 -6.44089 0.68758 0.75234 1.25228 1.25802 1.34788 2.22982 2.89579 3.18814 3.33679 3.69527 3.90728 4.01082 4.12489 4.14718 4.29079 4.35696 4.40837 4.53215 4.56197 4.63815 4.73629 4.86186 4.88342 4.92008 4.96646 5.01971 5.06751 5.11791 5.18235 5.29542 5.37967 5.42315 5.42953 5.49783 5.75293 5.79968 5.97368 6.04902 6.32262 6.43056 6.62281 6.74336 7.02230 7.23110 8.76302 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.007753 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.374916 B = 3610.813947 C = 4811.795157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.148 4.148 3 C 0.142 3.858 4 C -0.141 4.141 5 O -0.556 6.556 6 C 0.039 3.961 7 N -0.666 5.666 8 C 0.213 3.787 9 H 0.042 0.958 10 C -0.530 4.530 11 H 0.034 0.966 12 C 0.025 3.975 13 N -0.937 5.937 14 Si 0.927 3.073 15 H -0.267 1.267 16 H -0.242 1.242 17 H -0.287 1.287 18 C -0.048 4.048 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.122 4.122 23 C -0.154 4.154 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.381 0.619 33 H 0.017 0.983 34 H 0.060 0.940 35 H 0.331 0.669 36 H 0.267 0.733 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.961 -0.063 10.501 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 C 0.101 3.899 4 C -0.198 4.198 5 O -0.362 6.362 6 C -0.091 4.091 7 N -0.296 5.296 8 C 0.105 3.895 9 H 0.060 0.940 10 C -0.569 4.569 11 H 0.053 0.947 12 C -0.174 4.174 13 N -0.576 5.576 14 Si 0.751 3.249 15 H -0.192 1.192 16 H -0.165 1.165 17 H -0.213 1.213 18 C -0.049 4.049 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.161 4.161 22 C -0.139 4.139 23 C -0.172 4.172 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.229 0.771 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.149 0.851 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.172 0.286 10.644 13.422 hybrid contribution 1.143 -1.439 -0.974 2.080 sum -7.029 -1.154 9.670 12.010 Atomic orbital electron populations 1.21705 0.93957 1.01911 1.02365 1.22163 0.98010 0.95582 1.02831 1.21116 0.90602 0.92214 0.85950 1.21775 1.01773 1.00324 0.95910 1.86488 1.76230 1.58070 1.15434 1.22578 0.96099 0.91123 0.99322 1.61000 1.05680 1.10993 1.51943 1.18460 0.86972 0.91699 0.92399 0.93980 1.21687 1.31037 1.10570 0.93581 0.94727 1.25890 0.94665 1.00557 0.96335 1.70061 1.34680 1.34114 1.18729 0.86064 0.80055 0.79167 0.79569 1.19199 1.16523 1.21288 1.20244 0.94764 0.96257 0.93592 1.20900 1.00145 0.92595 1.00261 1.21382 0.97399 0.97881 0.97671 1.21324 0.96691 0.98462 0.99584 1.21308 1.00298 0.92193 1.00138 1.21109 0.97682 0.98964 0.99467 0.91820 0.92266 0.92445 0.91665 0.90917 0.91795 0.90390 0.92911 0.77123 0.96511 0.92151 0.85064 0.92430 0.87670 0.84352 0.83483 0.84064 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.32 71.98 0.67 -2.21 16 2 C -0.15 -3.55 5.20 30.60 0.16 -3.39 16 3 C 0.14 4.16 0.85 -10.79 -0.01 4.15 16 4 C -0.14 -4.12 8.02 71.98 0.58 -3.54 16 5 O -0.56 -16.01 12.38 -148.98 -1.84 -17.86 16 6 C 0.04 1.43 4.25 86.30 0.37 1.80 16 7 N -0.67 -27.22 5.68 -499.35 -2.84 -30.06 16 8 C 0.21 9.87 2.15 43.43 0.09 9.97 16 9 H 0.04 1.97 4.23 -2.39 -0.01 1.96 16 10 C -0.53 -29.25 8.58 25.60 0.22 -29.03 16 11 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 12 C 0.03 1.43 5.47 84.65 0.46 1.89 16 13 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 14 Si 0.93 42.89 26.96 68.60 1.85 44.74 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.24 -10.23 6.13 99.48 0.61 -9.62 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 18 C -0.05 -2.07 4.93 -19.87 -0.10 -2.17 16 19 C -0.12 -4.83 9.27 22.27 0.21 -4.62 16 20 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 21 C -0.14 -4.27 10.05 22.27 0.22 -4.04 16 22 C -0.12 -3.93 10.05 22.27 0.22 -3.70 16 23 C -0.15 -6.06 9.67 22.27 0.22 -5.84 16 24 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.06 1.21 7.82 -2.39 -0.02 1.19 16 26 H 0.06 1.16 6.34 -2.39 -0.02 1.15 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.98 6.34 -2.39 -0.02 1.96 16 31 H 0.05 1.69 6.57 -2.39 -0.02 1.67 16 32 H 0.38 8.74 9.05 -74.05 -0.67 8.07 16 33 H 0.02 0.70 8.00 -2.38 -0.02 0.68 16 34 H 0.06 2.16 7.82 -2.39 -0.02 2.14 16 35 H 0.33 13.93 5.96 -89.69 -0.53 13.40 16 36 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 37 H 0.11 4.25 7.46 -2.91 -0.02 4.23 16 38 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 39 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 40 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 41 H 0.11 4.11 8.00 -2.91 -0.02 4.09 16 Total: -1.00 -65.09 327.88 0.72 -64.37 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.28 Total: 40.40 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 3.54 Total: -44.66 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -2.54 Total: -87.00 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.84 Total: -17.86 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.85 Total: 44.74 kcal Total: -65.09 0.72 -64.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087027875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.685 kcal (2) G-P(sol) polarization free energy of solvation -65.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds