Wall clock time and date at job start Mon Mar 30 2020 07:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47078 * 2 1 4 4 C 1.52995 * 109.47273 * 60.00034 * 3 2 1 5 5 O 1.42908 * 109.46956 * 300.00073 * 3 2 1 6 6 C 1.53003 * 109.47078 * 180.02562 * 3 2 1 7 7 N 1.46903 * 109.47016 * 184.99820 * 6 3 2 8 8 C 1.46902 * 110.99862 * 180.02562 * 7 6 3 9 9 H 1.08999 * 109.46716 * 34.99871 * 8 7 6 10 10 C 1.50699 * 109.46901 * 274.99801 * 8 7 6 11 11 H 1.07996 * 120.00447 * 324.78452 * 10 8 7 12 12 C 1.37884 * 119.99554 * 144.77967 * 10 8 7 13 13 N 1.31509 * 119.99805 * 5.09829 * 12 10 8 14 14 Si 1.86799 * 119.99840 * 185.09320 * 12 10 8 15 15 H 1.48499 * 109.46929 * 60.00335 * 14 12 10 16 16 H 1.48495 * 109.47284 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47191 * 300.00540 * 14 12 10 18 18 C 1.50699 * 109.46919 * 155.00208 * 8 7 6 19 19 C 1.38237 * 120.00179 * 45.17604 * 18 8 7 20 20 C 1.38230 * 119.99618 * 179.80868 * 19 18 8 21 21 C 1.38243 * 120.00445 * 0.40074 * 20 19 18 22 22 C 1.38232 * 119.99344 * 359.85125 * 21 20 19 23 23 C 1.38229 * 120.00520 * 359.96047 * 22 21 20 24 24 H 1.09002 * 109.46788 * 299.99875 * 1 2 3 25 25 H 1.08998 * 109.47273 * 60.00072 * 1 2 3 26 26 H 1.09002 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47273 * 119.99928 * 2 1 3 28 28 H 1.08993 * 109.46984 * 239.99570 * 2 1 3 29 29 H 1.09003 * 109.47490 * 60.00258 * 4 3 2 30 30 H 1.08998 * 109.47399 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47199 * 300.00154 * 4 3 2 32 32 H 0.96696 * 113.99739 * 299.99347 * 5 3 2 33 33 H 1.08998 * 109.46907 * 304.99851 * 6 3 2 34 34 H 1.09001 * 109.46758 * 64.99905 * 6 3 2 35 35 H 1.00902 * 110.99923 * 56.04920 * 7 6 3 36 36 H 0.97006 * 119.99816 * 179.97438 * 13 12 10 37 37 H 1.08000 * 119.99574 * 359.97438 * 19 18 8 38 38 H 1.08006 * 120.00087 * 180.23371 * 20 19 18 39 39 H 1.07993 * 119.99960 * 179.83120 * 21 20 19 40 40 H 1.08004 * 119.99376 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00064 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 8 1.5636 2.1161 -1.1668 6 6 3.5700 1.4425 -0.0006 7 7 4.0597 2.8222 0.1200 8 6 5.5282 2.8613 0.1222 9 1 5.9133 2.0842 -0.5380 10 6 6.0348 2.6277 1.5221 11 1 5.4828 3.0114 2.3673 12 6 7.2032 1.9238 1.7239 13 7 7.9277 1.5432 0.6945 14 14 7.7570 1.5111 3.4595 15 1 6.7199 0.6834 4.1263 16 1 9.0343 0.7556 3.4051 17 1 7.9572 2.7665 4.2270 18 6 5.9955 4.2095 -0.3626 19 6 5.3987 5.3610 0.1157 20 6 5.8301 6.5977 -0.3261 21 6 6.8527 6.6828 -1.2524 22 6 7.4459 5.5311 -1.7345 23 6 7.0172 4.2944 -1.2899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 1.6500 2.1392 30 1 1.8937 3.1912 1.2494 31 1 0.4400 2.1637 1.2492 32 1 1.8490 1.7126 -1.9980 33 1 3.9337 0.8529 0.8409 34 1 3.9329 1.0083 -0.9323 35 1 3.6846 3.2683 0.9437 36 1 8.7499 1.0484 0.8365 37 1 4.5972 5.2944 0.8365 38 1 5.3664 7.4976 0.0504 39 1 7.1878 7.6489 -1.5996 40 1 8.2446 5.5975 -2.4586 41 1 7.4805 3.3946 -1.6669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087027876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:53 Heat of formation + Delta-G solvation = -40.814890 kcal Electronic energy + Delta-G solvation = -20312.564176 eV Core-core repulsion = 17384.546682 eV Total energy + Delta-G solvation = -2928.017495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.63692 -38.05161 -35.01059 -32.91838 -32.24692 -30.52632 -29.89260 -28.65688 -26.60841 -25.37481 -23.14189 -22.07358 -21.28379 -19.75405 -19.66768 -16.88203 -16.22672 -15.77247 -15.08416 -15.01865 -14.70252 -14.05930 -13.94503 -13.76437 -13.22455 -12.98719 -12.41388 -12.39152 -12.06425 -11.94756 -11.82052 -11.65997 -11.63232 -11.41115 -11.11753 -10.96710 -10.91779 -10.76986 -10.30497 -10.19351 -10.08271 -9.94676 -9.46993 -9.26955 -8.61371 -7.93727 -7.64799 -7.22410 -6.14412 -4.26234 2.40334 2.46101 3.21518 3.26810 3.29327 4.29264 4.58232 4.84063 5.00187 5.10921 5.16948 5.28010 5.53332 5.57759 5.72618 5.74551 5.80657 5.83825 5.94093 6.01361 6.11429 6.17573 6.24390 6.36769 6.41711 6.45097 6.52195 6.56344 6.63989 6.74057 6.93611 7.10054 7.23128 7.41178 7.53685 7.68510 7.78270 8.01032 8.08673 8.12555 8.18134 8.61559 8.87289 9.40808 10.86855 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.007419 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.352537 B = 3772.949401 C = 5208.101299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C 0.133 3.867 4 C -0.140 4.140 5 O -0.549 6.549 6 C 0.047 3.953 7 N -0.679 5.679 8 C 0.229 3.771 9 H 0.069 0.931 10 C -0.540 4.540 11 H 0.056 0.944 12 C 0.074 3.926 13 N -0.880 5.880 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.007 4.007 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.156 4.156 22 C -0.130 4.130 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.369 0.631 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.326 0.674 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.601 0.005 -2.265 8.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.092 3.908 4 C -0.197 4.197 5 O -0.354 6.354 6 C -0.083 4.083 7 N -0.309 5.309 8 C 0.121 3.879 9 H 0.087 0.913 10 C -0.579 4.579 11 H 0.075 0.925 12 C -0.131 4.131 13 N -0.516 5.516 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.008 4.008 19 C -0.130 4.130 20 C -0.151 4.151 21 C -0.175 4.175 22 C -0.148 4.148 23 C -0.131 4.131 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.215 0.785 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.144 0.856 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.748 0.409 -2.541 9.119 hybrid contribution 1.171 -0.971 1.555 2.175 sum -7.577 -0.562 -0.986 7.662 Atomic orbital electron populations 1.21720 0.95583 1.00700 1.02359 1.22188 0.96602 0.97565 1.02483 1.21247 0.92820 0.90058 0.86628 1.21753 1.00959 1.01616 0.95402 1.86510 1.76356 1.57317 1.15239 1.22357 0.92763 0.92343 1.00862 1.60912 1.10427 1.14660 1.44904 1.18361 0.83009 0.90524 0.96009 0.91310 1.21609 1.08992 1.35283 0.91986 0.92548 1.24975 0.96188 0.95013 0.96933 1.69896 1.14331 1.37579 1.29799 0.86681 0.78001 0.78671 0.84884 1.20191 1.21133 1.20102 1.20418 0.92908 0.96699 0.90788 1.20796 0.99986 0.91953 1.00216 1.20932 0.98165 0.97130 0.98871 1.20767 0.99049 0.97322 1.00331 1.20956 1.00021 0.93115 1.00744 1.21030 0.97557 0.96863 0.97645 0.92613 0.92249 0.93497 0.91317 0.91971 0.91702 0.91241 0.92383 0.78511 0.94296 0.92128 0.85560 0.92544 0.87438 0.87807 0.87913 0.87737 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.41 37.16 0.35 -1.30 16 2 C -0.15 -1.90 5.17 -26.73 -0.14 -2.04 16 3 C 0.13 1.99 0.86 -90.62 -0.08 1.91 16 4 C -0.14 -2.03 8.04 37.16 0.30 -1.73 16 5 O -0.55 -8.43 12.25 -35.23 -0.43 -8.86 16 6 C 0.05 0.86 4.69 -3.82 -0.02 0.84 16 7 N -0.68 -13.88 5.69 -109.18 -0.62 -14.51 16 8 C 0.23 5.44 2.26 -70.02 -0.16 5.28 16 9 H 0.07 1.82 6.84 -51.93 -0.35 1.47 16 10 C -0.54 -13.93 8.08 -34.44 -0.28 -14.21 16 11 H 0.06 1.45 7.76 -52.49 -0.41 1.05 16 12 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 13 N -0.88 -24.01 12.84 55.43 0.71 -23.30 16 14 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.01 -0.16 4.93 -104.62 -0.52 -0.67 16 19 C -0.11 -2.36 9.28 -39.58 -0.37 -2.72 16 20 C -0.13 -2.53 10.05 -39.58 -0.40 -2.92 16 21 C -0.16 -2.89 10.05 -39.58 -0.40 -3.29 16 22 C -0.13 -2.55 10.05 -39.59 -0.40 -2.95 16 23 C -0.11 -2.51 9.67 -39.58 -0.38 -2.90 16 24 H 0.05 0.62 6.43 -51.93 -0.33 0.29 16 25 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.09 6.51 -51.93 -0.34 0.75 16 31 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 32 H 0.37 4.65 9.04 45.56 0.41 5.06 16 33 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16 34 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 35 H 0.33 6.59 5.75 -39.29 -0.23 6.36 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.11 2.18 7.43 -52.49 -0.39 1.79 16 38 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 39 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.12 2.70 8.00 -52.49 -0.42 2.28 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -27.87 332.60 -8.65 -36.52 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -5.72 Total: 14.34 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -2.58 Total: -24.84 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.09 Total: -37.81 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.43 Total: -8.86 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.87 -8.65 -36.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087027876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.300 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds