Wall clock time and date at job start Mon Mar 30 2020 07:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47078 * 2 1 4 4 C 1.52995 * 109.47273 * 60.00034 * 3 2 1 5 5 O 1.42908 * 109.46956 * 300.00073 * 3 2 1 6 6 C 1.53003 * 109.47078 * 180.02562 * 3 2 1 7 7 N 1.46903 * 109.47016 * 184.99820 * 6 3 2 8 8 C 1.46902 * 110.99862 * 180.02562 * 7 6 3 9 9 H 1.08999 * 109.46716 * 34.99871 * 8 7 6 10 10 C 1.50699 * 109.46901 * 274.99801 * 8 7 6 11 11 H 1.07996 * 120.00447 * 324.78452 * 10 8 7 12 12 C 1.37884 * 119.99554 * 144.77967 * 10 8 7 13 13 N 1.31509 * 119.99805 * 5.09829 * 12 10 8 14 14 Si 1.86799 * 119.99840 * 185.09320 * 12 10 8 15 15 H 1.48499 * 109.46929 * 60.00335 * 14 12 10 16 16 H 1.48495 * 109.47284 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47191 * 300.00540 * 14 12 10 18 18 C 1.50699 * 109.46919 * 155.00208 * 8 7 6 19 19 C 1.38237 * 120.00179 * 45.17604 * 18 8 7 20 20 C 1.38230 * 119.99618 * 179.80868 * 19 18 8 21 21 C 1.38243 * 120.00445 * 0.40074 * 20 19 18 22 22 C 1.38232 * 119.99344 * 359.85125 * 21 20 19 23 23 C 1.38229 * 120.00520 * 359.96047 * 22 21 20 24 24 H 1.09002 * 109.46788 * 299.99875 * 1 2 3 25 25 H 1.08998 * 109.47273 * 60.00072 * 1 2 3 26 26 H 1.09002 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47273 * 119.99928 * 2 1 3 28 28 H 1.08993 * 109.46984 * 239.99570 * 2 1 3 29 29 H 1.09003 * 109.47490 * 60.00258 * 4 3 2 30 30 H 1.08998 * 109.47399 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47199 * 300.00154 * 4 3 2 32 32 H 0.96696 * 113.99739 * 299.99347 * 5 3 2 33 33 H 1.08998 * 109.46907 * 304.99851 * 6 3 2 34 34 H 1.09001 * 109.46758 * 64.99905 * 6 3 2 35 35 H 1.00902 * 110.99923 * 56.04920 * 7 6 3 36 36 H 0.97006 * 119.99816 * 179.97438 * 13 12 10 37 37 H 1.08000 * 119.99574 * 359.97438 * 19 18 8 38 38 H 1.08006 * 120.00087 * 180.23371 * 20 19 18 39 39 H 1.07993 * 119.99960 * 179.83120 * 21 20 19 40 40 H 1.08004 * 119.99376 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00064 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 8 1.5636 2.1161 -1.1668 6 6 3.5700 1.4425 -0.0006 7 7 4.0597 2.8222 0.1200 8 6 5.5282 2.8613 0.1222 9 1 5.9133 2.0842 -0.5380 10 6 6.0348 2.6277 1.5221 11 1 5.4828 3.0114 2.3673 12 6 7.2032 1.9238 1.7239 13 7 7.9277 1.5432 0.6945 14 14 7.7570 1.5111 3.4595 15 1 6.7199 0.6834 4.1263 16 1 9.0343 0.7556 3.4051 17 1 7.9572 2.7665 4.2270 18 6 5.9955 4.2095 -0.3626 19 6 5.3987 5.3610 0.1157 20 6 5.8301 6.5977 -0.3261 21 6 6.8527 6.6828 -1.2524 22 6 7.4459 5.5311 -1.7345 23 6 7.0172 4.2944 -1.2899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 1.6500 2.1392 30 1 1.8937 3.1912 1.2494 31 1 0.4400 2.1637 1.2492 32 1 1.8490 1.7126 -1.9980 33 1 3.9337 0.8529 0.8409 34 1 3.9329 1.0083 -0.9323 35 1 3.6846 3.2683 0.9437 36 1 8.7499 1.0484 0.8365 37 1 4.5972 5.2944 0.8365 38 1 5.3664 7.4976 0.0504 39 1 7.1878 7.6489 -1.5996 40 1 8.2446 5.5975 -2.4586 41 1 7.4805 3.3946 -1.6669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087027876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:53 Heat of formation + Delta-G solvation = -58.274441 kcal Electronic energy + Delta-G solvation = -20313.321279 eV Core-core repulsion = 17384.546682 eV Total energy + Delta-G solvation = -2928.774597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12210 -39.46063 -36.67932 -34.35448 -33.84434 -32.05727 -31.47845 -29.94688 -28.25962 -26.92808 -24.74911 -23.51992 -22.79781 -21.42909 -20.92606 -18.81334 -17.74571 -17.06686 -16.83172 -16.26889 -16.20375 -15.72394 -15.50690 -15.16564 -14.70892 -14.48311 -13.96974 -13.87325 -13.47287 -13.41744 -13.22859 -13.07769 -12.89832 -12.88290 -12.81270 -12.57267 -12.42926 -12.07062 -11.83974 -11.77465 -11.64914 -11.36243 -11.26252 -10.72650 -10.47004 -9.53486 -9.29047 -8.98734 -8.11882 -6.32557 0.79292 0.86611 1.35927 1.36595 1.43526 2.35416 3.05915 3.26279 3.40315 3.74513 3.95827 4.05840 4.18424 4.28531 4.34467 4.40993 4.47688 4.62109 4.71720 4.76501 4.91010 4.93877 4.95901 5.04164 5.07917 5.08716 5.14184 5.16797 5.20838 5.44252 5.45953 5.50206 5.53538 5.62743 5.83512 5.92078 6.00599 6.20604 6.34554 6.47925 6.84368 6.92110 7.03584 7.36985 8.85132 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.007419 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.352537 B = 3772.949401 C = 5208.101299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C 0.142 3.858 4 C -0.140 4.140 5 O -0.559 6.559 6 C 0.049 3.951 7 N -0.672 5.672 8 C 0.238 3.762 9 H 0.030 0.970 10 C -0.547 4.547 11 H 0.052 0.948 12 C 0.026 3.974 13 N -0.908 5.908 14 Si 0.947 3.053 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.275 1.275 18 C -0.035 4.035 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.149 4.149 22 C -0.131 4.131 23 C -0.139 4.139 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.380 0.620 33 H 0.017 0.983 34 H 0.050 0.950 35 H 0.328 0.672 36 H 0.263 0.737 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.561 1.400 -1.924 9.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.185 4.185 3 C 0.101 3.899 4 C -0.197 4.197 5 O -0.365 6.365 6 C -0.081 4.081 7 N -0.302 5.302 8 C 0.129 3.871 9 H 0.049 0.951 10 C -0.586 4.586 11 H 0.070 0.930 12 C -0.175 4.175 13 N -0.546 5.546 14 Si 0.773 3.227 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.037 4.037 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.157 4.157 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.228 0.772 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.725 1.802 -2.205 10.133 hybrid contribution 1.457 -1.342 1.370 2.408 sum -8.268 0.460 -0.835 8.323 Atomic orbital electron populations 1.21681 0.93944 1.01817 1.02369 1.22142 0.97908 0.95642 1.02773 1.21150 0.90009 0.91800 0.86919 1.21761 1.02067 1.00644 0.95232 1.86481 1.76195 1.57945 1.15892 1.22424 0.95554 0.90766 0.99375 1.60900 1.08587 1.15913 1.44783 1.18081 0.84490 0.90255 0.94229 0.95149 1.21848 1.08863 1.34971 0.92880 0.92956 1.25668 0.96468 0.95246 1.00149 1.70027 1.14633 1.38498 1.31406 0.85785 0.77658 0.78368 0.80936 1.19410 1.20975 1.20025 1.20424 0.94080 0.96852 0.92312 1.20916 1.00357 0.92424 1.00695 1.21346 0.97838 0.97344 0.98133 1.21236 0.97875 0.98514 0.99044 1.21268 1.00432 0.92370 1.00797 1.21018 0.98324 0.97518 0.98878 0.92385 0.92401 0.91870 0.91406 0.91426 0.91393 0.92650 0.90599 0.77246 0.96434 0.93116 0.85321 0.92786 0.87245 0.84272 0.83830 0.85128 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.41 71.98 0.68 -2.19 16 2 C -0.15 -3.55 5.17 30.59 0.16 -3.40 16 3 C 0.14 4.20 0.86 -10.80 -0.01 4.19 16 4 C -0.14 -3.95 8.04 71.98 0.58 -3.37 16 5 O -0.56 -16.72 12.25 -148.98 -1.83 -18.54 16 6 C 0.05 1.86 4.69 86.30 0.41 2.27 16 7 N -0.67 -28.42 5.69 -499.34 -2.84 -31.26 16 8 C 0.24 11.83 2.26 43.42 0.10 11.93 16 9 H 0.03 1.72 6.84 -2.39 -0.02 1.71 16 10 C -0.55 -29.09 8.08 25.60 0.21 -28.88 16 11 H 0.05 2.76 7.76 -2.91 -0.02 2.74 16 12 C 0.03 1.42 5.45 84.66 0.46 1.88 16 13 N -0.91 -51.52 12.84 21.45 0.28 -51.24 16 14 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 C -0.04 -1.68 4.93 -19.87 -0.10 -1.78 16 19 C -0.13 -5.25 9.28 22.27 0.21 -5.04 16 20 C -0.13 -4.53 10.05 22.27 0.22 -4.31 16 21 C -0.15 -4.99 10.05 22.27 0.22 -4.77 16 22 C -0.13 -4.94 10.05 22.27 0.22 -4.71 16 23 C -0.14 -6.36 9.67 22.27 0.22 -6.15 16 24 H 0.06 1.15 6.43 -2.39 -0.02 1.14 16 25 H 0.06 1.20 7.68 -2.39 -0.02 1.19 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.71 6.51 -2.39 -0.02 1.69 16 31 H 0.08 1.87 6.43 -2.38 -0.02 1.85 16 32 H 0.38 9.36 9.04 -74.06 -0.67 8.69 16 33 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16 34 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 35 H 0.33 13.59 5.75 -89.69 -0.52 13.07 16 36 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 37 H 0.11 4.42 7.43 -2.91 -0.02 4.40 16 38 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 39 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.09 4.61 8.00 -2.91 -0.02 4.58 16 Total: -1.00 -61.15 332.60 1.04 -60.11 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -0.17 Total: 40.21 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 3.57 Total: -44.32 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -2.57 Total: -82.50 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -1.83 Total: -18.54 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -61.15 1.04 -60.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087027876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.840 kcal (2) G-P(sol) polarization free energy of solvation -61.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds