Wall clock time and date at job start Mon Mar 30 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47450 * 2 1 4 4 C 1.52995 * 109.47167 * 305.00454 * 3 2 1 5 5 O 1.42905 * 109.46778 * 64.99894 * 3 2 1 6 6 C 1.52998 * 109.47200 * 185.00259 * 3 2 1 7 7 N 1.46897 * 109.47365 * 180.02562 * 6 3 2 8 8 C 1.46893 * 111.00353 * 179.97438 * 7 6 3 9 9 H 1.09005 * 109.47047 * 34.99691 * 8 7 6 10 10 C 1.50706 * 109.47027 * 274.99985 * 8 7 6 11 11 H 1.07999 * 119.99798 * 294.97201 * 10 8 7 12 12 C 1.37875 * 119.99662 * 114.98079 * 10 8 7 13 13 N 1.31520 * 119.99343 * 184.83688 * 12 10 8 14 14 Si 1.86800 * 120.00408 * 4.83135 * 12 10 8 15 15 H 1.48493 * 109.46906 * 84.70369 * 14 12 10 16 16 H 1.48503 * 109.46784 * 204.70298 * 14 12 10 17 17 H 1.48495 * 109.46865 * 324.70355 * 14 12 10 18 18 C 1.50700 * 109.47091 * 154.99821 * 8 7 6 19 19 C 1.38226 * 120.00159 * 44.79557 * 18 8 7 20 20 C 1.38244 * 120.00170 * 179.80977 * 19 18 8 21 21 C 1.38230 * 119.99402 * 0.39230 * 20 19 18 22 22 C 1.38232 * 120.00354 * 359.85881 * 21 20 19 23 23 C 1.38234 * 120.00245 * 359.95933 * 22 21 20 24 24 H 1.09002 * 109.46844 * 300.00341 * 1 2 3 25 25 H 1.09005 * 109.46906 * 59.99252 * 1 2 3 26 26 H 1.08993 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46495 * 240.00047 * 2 1 3 28 28 H 1.08996 * 109.46788 * 120.00784 * 2 1 3 29 29 H 1.09007 * 109.47296 * 299.99515 * 4 3 2 30 30 H 1.08996 * 109.47620 * 60.00101 * 4 3 2 31 31 H 1.09000 * 109.47077 * 180.02562 * 4 3 2 32 32 H 0.96699 * 113.99380 * 60.00197 * 5 3 2 33 33 H 1.08991 * 109.47139 * 60.00034 * 6 3 2 34 34 H 1.09000 * 109.46623 * 300.00146 * 6 3 2 35 35 H 1.00899 * 110.99850 * 56.03860 * 7 6 3 36 36 H 0.97002 * 119.99754 * 179.97438 * 13 12 10 37 37 H 1.07996 * 120.00066 * 359.97438 * 19 18 8 38 38 H 1.07992 * 120.00247 * 180.22952 * 20 19 18 39 39 H 1.08006 * 119.99679 * 179.83168 * 21 20 19 40 40 H 1.08008 * 119.99756 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00285 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4300 2.1991 -1.1815 5 8 1.6620 2.0813 1.2211 6 6 3.5649 1.4442 -0.1258 7 7 4.0547 2.8291 -0.1252 8 6 5.5183 2.8700 -0.2441 9 1 5.8534 2.0562 -0.8873 10 6 6.1377 2.7186 1.1214 11 1 5.9843 3.4805 1.8713 12 6 6.9002 1.6076 1.4132 13 7 7.3615 1.4283 2.6317 14 14 7.2780 0.3571 0.0779 15 1 8.4660 0.8014 -0.6944 16 1 7.5570 -0.9622 0.7000 17 1 6.1114 0.2381 -0.8331 18 6 5.9370 4.1882 -0.8424 19 6 5.3683 5.3642 -0.3904 20 6 5.7553 6.5738 -0.9365 21 6 6.7051 6.6065 -1.9403 22 6 7.2700 5.4301 -2.3959 23 6 6.8858 4.2208 -1.8473 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.7184 1.7118 -2.1130 30 1 0.3438 2.1979 -1.0919 31 1 1.7938 3.2266 -1.1818 32 1 2.0142 1.6540 2.0139 33 1 3.8532 0.9569 -1.0571 34 1 3.9995 0.9051 0.7160 35 1 3.7453 3.3217 0.6993 36 1 7.8977 0.6465 2.8371 37 1 4.6236 5.3382 0.3913 38 1 5.3137 7.4928 -0.5807 39 1 7.0055 7.5513 -2.3688 40 1 8.0118 5.4557 -3.1806 41 1 7.3275 3.3018 -2.2030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087027877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:56 Heat of formation + Delta-G solvation = -39.840332 kcal Electronic energy + Delta-G solvation = -20434.208199 eV Core-core repulsion = 17506.232965 eV Total energy + Delta-G solvation = -2927.975235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.79223 -38.21786 -35.13841 -32.99310 -32.24053 -30.81743 -30.16306 -28.77947 -26.84205 -25.44034 -23.06924 -22.23469 -21.49503 -19.91065 -19.61060 -17.31582 -16.33330 -15.86877 -15.16465 -15.04014 -14.74836 -14.37530 -14.10231 -13.79757 -13.24777 -12.85947 -12.72154 -12.61729 -12.18705 -12.08958 -11.93211 -11.90285 -11.75954 -11.58884 -11.21570 -11.06339 -11.01522 -10.76432 -10.47986 -10.32944 -10.07948 -9.85661 -9.43277 -9.33460 -8.76682 -8.20226 -7.91092 -7.27468 -6.27759 -4.29526 2.12872 2.19824 3.12778 3.19770 3.22700 4.21731 4.49446 4.61602 4.93029 5.10694 5.13881 5.27218 5.46523 5.53492 5.54657 5.60420 5.73603 5.76078 5.86291 6.00740 6.05056 6.09771 6.14808 6.25745 6.29152 6.32524 6.39394 6.42762 6.49264 6.60413 6.75328 6.76824 6.86090 7.16000 7.25239 7.39382 7.54172 7.77968 7.98679 8.07964 8.26710 8.56251 8.78580 9.34138 10.84673 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.007804 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.139641 B = 3586.964213 C = 4794.252706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.151 4.151 3 C 0.133 3.867 4 C -0.127 4.127 5 O -0.558 6.558 6 C 0.041 3.959 7 N -0.678 5.678 8 C 0.200 3.800 9 H 0.052 0.948 10 C -0.532 4.532 11 H 0.077 0.923 12 C 0.079 3.921 13 N -0.888 5.888 14 Si 0.868 3.132 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.261 1.261 18 C -0.014 4.014 19 C -0.103 4.103 20 C -0.125 4.125 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.133 4.133 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.373 0.627 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.340 0.660 36 H 0.266 0.734 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 0.574 -7.292 10.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.092 3.908 4 C -0.184 4.184 5 O -0.363 6.363 6 C -0.090 4.090 7 N -0.308 5.308 8 C 0.092 3.908 9 H 0.069 0.931 10 C -0.571 4.571 11 H 0.096 0.904 12 C -0.125 4.125 13 N -0.525 5.525 14 Si 0.696 3.304 15 H -0.198 1.198 16 H -0.213 1.213 17 H -0.186 1.186 18 C -0.016 4.016 19 C -0.121 4.121 20 C -0.143 4.143 21 C -0.169 4.169 22 C -0.141 4.141 23 C -0.152 4.152 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.220 0.780 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.158 0.842 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.516 0.931 -8.263 11.902 hybrid contribution 1.197 -1.517 0.733 2.067 sum -7.320 -0.586 -7.530 10.518 Atomic orbital electron populations 1.21739 0.95495 1.00753 1.02391 1.22196 0.96735 0.97573 1.02406 1.21289 0.93242 0.90599 0.85633 1.21629 0.99544 1.02088 0.95187 1.86489 1.76780 1.57587 1.15459 1.22406 0.93332 0.92566 1.00658 1.60991 1.12153 1.12116 1.45567 1.18710 0.85830 0.90598 0.95658 0.93054 1.21533 1.32305 1.07060 0.96217 0.90444 1.25110 0.94799 0.97513 0.95088 1.69903 1.34882 1.28802 1.18908 0.87026 0.79557 0.81173 0.82671 1.19777 1.21319 1.18634 1.20238 0.93059 0.96550 0.91705 1.20853 0.99846 0.91681 0.99749 1.21029 0.98258 0.97548 0.97489 1.20840 0.99409 0.97349 0.99312 1.20922 1.00107 0.92859 1.00245 1.20931 0.99124 0.97286 0.97833 0.92242 0.92465 0.93494 0.91473 0.91909 0.92192 0.92993 0.90590 0.78001 0.91943 0.94664 0.84200 0.92404 0.86626 0.87256 0.87437 0.87316 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.32 37.16 0.35 -1.34 16 2 C -0.15 -1.98 5.20 -26.73 -0.14 -2.12 16 3 C 0.13 2.02 0.85 -90.62 -0.08 1.95 16 4 C -0.13 -1.85 8.20 37.16 0.30 -1.54 16 5 O -0.56 -8.72 11.85 -35.23 -0.42 -9.13 16 6 C 0.04 0.75 4.63 -3.83 -0.02 0.73 16 7 N -0.68 -13.53 5.05 -109.19 -0.55 -14.08 16 8 C 0.20 4.50 2.15 -70.02 -0.15 4.35 16 9 H 0.05 1.20 3.98 -51.93 -0.21 0.99 16 10 C -0.53 -14.01 8.60 -34.44 -0.30 -14.31 16 11 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 12 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 14 Si 0.87 20.45 27.25 -169.99 -4.63 15.82 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.26 -5.81 6.31 56.52 0.36 -5.45 16 18 C -0.01 -0.31 4.93 -104.63 -0.52 -0.82 16 19 C -0.10 -2.03 9.28 -39.58 -0.37 -2.40 16 20 C -0.13 -2.17 10.05 -39.58 -0.40 -2.56 16 21 C -0.15 -2.49 10.05 -39.59 -0.40 -2.89 16 22 C -0.12 -2.14 10.05 -39.59 -0.40 -2.53 16 23 C -0.13 -2.65 9.67 -39.58 -0.38 -3.03 16 24 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 25 H 0.06 0.64 6.35 -51.93 -0.33 0.31 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.69 6.34 -51.93 -0.33 0.36 16 31 H 0.08 1.22 7.60 -51.93 -0.39 0.83 16 32 H 0.37 5.11 9.04 45.56 0.41 5.52 16 33 H 0.06 1.17 7.98 -51.93 -0.41 0.75 16 34 H 0.04 0.72 8.00 -51.93 -0.42 0.30 16 35 H 0.34 6.97 7.28 -39.29 -0.29 6.69 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.12 2.24 7.42 -52.49 -0.39 1.85 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 41 H 0.11 2.08 8.00 -52.49 -0.42 1.66 16 LS Contribution 330.00 15.07 4.97 4.97 Total: -1.00 -28.61 330.00 -8.18 -36.79 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -5.74 Total: 15.19 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -2.59 Total: -24.46 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.22 Total: -39.19 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.42 Total: -9.13 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.63 Total: 15.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.61 -8.18 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087027877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.048 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds