Wall clock time and date at job start Mon Mar 30 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47450 * 2 1 4 4 C 1.52995 * 109.47167 * 305.00454 * 3 2 1 5 5 O 1.42905 * 109.46778 * 64.99894 * 3 2 1 6 6 C 1.52998 * 109.47200 * 185.00259 * 3 2 1 7 7 N 1.46897 * 109.47365 * 180.02562 * 6 3 2 8 8 C 1.46893 * 111.00353 * 179.97438 * 7 6 3 9 9 H 1.09005 * 109.47047 * 34.99691 * 8 7 6 10 10 C 1.50706 * 109.47027 * 274.99985 * 8 7 6 11 11 H 1.07999 * 119.99798 * 294.97201 * 10 8 7 12 12 C 1.37875 * 119.99662 * 114.98079 * 10 8 7 13 13 N 1.31520 * 119.99343 * 184.83688 * 12 10 8 14 14 Si 1.86800 * 120.00408 * 4.83135 * 12 10 8 15 15 H 1.48493 * 109.46906 * 84.70369 * 14 12 10 16 16 H 1.48503 * 109.46784 * 204.70298 * 14 12 10 17 17 H 1.48495 * 109.46865 * 324.70355 * 14 12 10 18 18 C 1.50700 * 109.47091 * 154.99821 * 8 7 6 19 19 C 1.38226 * 120.00159 * 44.79557 * 18 8 7 20 20 C 1.38244 * 120.00170 * 179.80977 * 19 18 8 21 21 C 1.38230 * 119.99402 * 0.39230 * 20 19 18 22 22 C 1.38232 * 120.00354 * 359.85881 * 21 20 19 23 23 C 1.38234 * 120.00245 * 359.95933 * 22 21 20 24 24 H 1.09002 * 109.46844 * 300.00341 * 1 2 3 25 25 H 1.09005 * 109.46906 * 59.99252 * 1 2 3 26 26 H 1.08993 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46495 * 240.00047 * 2 1 3 28 28 H 1.08996 * 109.46788 * 120.00784 * 2 1 3 29 29 H 1.09007 * 109.47296 * 299.99515 * 4 3 2 30 30 H 1.08996 * 109.47620 * 60.00101 * 4 3 2 31 31 H 1.09000 * 109.47077 * 180.02562 * 4 3 2 32 32 H 0.96699 * 113.99380 * 60.00197 * 5 3 2 33 33 H 1.08991 * 109.47139 * 60.00034 * 6 3 2 34 34 H 1.09000 * 109.46623 * 300.00146 * 6 3 2 35 35 H 1.00899 * 110.99850 * 56.03860 * 7 6 3 36 36 H 0.97002 * 119.99754 * 179.97438 * 13 12 10 37 37 H 1.07996 * 120.00066 * 359.97438 * 19 18 8 38 38 H 1.07992 * 120.00247 * 180.22952 * 20 19 18 39 39 H 1.08006 * 119.99679 * 179.83168 * 21 20 19 40 40 H 1.08008 * 119.99756 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00285 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4300 2.1991 -1.1815 5 8 1.6620 2.0813 1.2211 6 6 3.5649 1.4442 -0.1258 7 7 4.0547 2.8291 -0.1252 8 6 5.5183 2.8700 -0.2441 9 1 5.8534 2.0562 -0.8873 10 6 6.1377 2.7186 1.1214 11 1 5.9843 3.4805 1.8713 12 6 6.9002 1.6076 1.4132 13 7 7.3615 1.4283 2.6317 14 14 7.2780 0.3571 0.0779 15 1 8.4660 0.8014 -0.6944 16 1 7.5570 -0.9622 0.7000 17 1 6.1114 0.2381 -0.8331 18 6 5.9370 4.1882 -0.8424 19 6 5.3683 5.3642 -0.3904 20 6 5.7553 6.5738 -0.9365 21 6 6.7051 6.6065 -1.9403 22 6 7.2700 5.4301 -2.3959 23 6 6.8858 4.2208 -1.8473 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.7184 1.7118 -2.1130 30 1 0.3438 2.1979 -1.0919 31 1 1.7938 3.2266 -1.1818 32 1 2.0142 1.6540 2.0139 33 1 3.8532 0.9569 -1.0571 34 1 3.9995 0.9051 0.7160 35 1 3.7453 3.3217 0.6993 36 1 7.8977 0.6465 2.8371 37 1 4.6236 5.3382 0.3913 38 1 5.3137 7.4928 -0.5807 39 1 7.0055 7.5513 -2.3688 40 1 8.0118 5.4557 -3.1806 41 1 7.3275 3.3018 -2.2030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087027877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:56 Heat of formation + Delta-G solvation = -58.706533 kcal Electronic energy + Delta-G solvation = -20435.026299 eV Core-core repulsion = 17506.232965 eV Total energy + Delta-G solvation = -2928.793334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24133 -39.52956 -36.77213 -34.35803 -34.04345 -32.26150 -31.58228 -30.03861 -28.51498 -26.90649 -24.61479 -23.65146 -22.87846 -21.41204 -20.97259 -19.30129 -17.79680 -17.13913 -16.82234 -16.33810 -16.25774 -15.91240 -15.46431 -15.19484 -14.89915 -14.41559 -14.19229 -14.03101 -13.76078 -13.68871 -13.31884 -13.08261 -12.99289 -12.88584 -12.77873 -12.62945 -12.41473 -12.04727 -11.85848 -11.78803 -11.72739 -11.34058 -11.21912 -10.90368 -10.58599 -9.63438 -9.42259 -8.97032 -8.39261 -6.44025 0.68700 0.75296 1.23791 1.26366 1.33692 2.22376 2.90990 3.17552 3.32477 3.64985 4.00984 4.06072 4.11545 4.16643 4.29393 4.37071 4.42291 4.55878 4.58317 4.65880 4.76527 4.80856 4.91853 4.93473 4.98265 5.05367 5.10583 5.15509 5.25949 5.30817 5.39728 5.42674 5.43746 5.58407 5.75481 5.80427 5.98015 6.06663 6.32610 6.44562 6.63038 6.77098 6.88981 7.23227 8.76910 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.007804 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.139641 B = 3586.964213 C = 4794.252706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.148 4.148 3 C 0.138 3.862 4 C -0.124 4.124 5 O -0.567 6.567 6 C 0.040 3.960 7 N -0.666 5.666 8 C 0.208 3.792 9 H 0.045 0.955 10 C -0.526 4.526 11 H 0.034 0.966 12 C 0.026 3.974 13 N -0.938 5.938 14 Si 0.926 3.074 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.242 1.242 18 C -0.048 4.048 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.142 4.142 22 C -0.121 4.121 23 C -0.153 4.153 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.379 0.621 33 H 0.063 0.937 34 H 0.010 0.990 35 H 0.334 0.666 36 H 0.266 0.734 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 1.065 -9.811 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 C 0.097 3.903 4 C -0.181 4.181 5 O -0.374 6.374 6 C -0.090 4.090 7 N -0.295 5.295 8 C 0.100 3.900 9 H 0.063 0.937 10 C -0.566 4.566 11 H 0.052 0.948 12 C -0.173 4.173 13 N -0.577 5.577 14 Si 0.751 3.249 15 H -0.192 1.192 16 H -0.212 1.212 17 H -0.166 1.166 18 C -0.049 4.049 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.160 4.160 22 C -0.139 4.139 23 C -0.172 4.172 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.227 0.773 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.124 0.876 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.141 1.431 -10.797 14.219 hybrid contribution 1.365 -1.519 1.532 2.553 sum -7.777 -0.088 -9.265 12.096 Atomic orbital electron populations 1.21701 0.93903 1.01873 1.02380 1.22166 0.98043 0.95700 1.02731 1.21288 0.90838 0.92370 0.85811 1.21611 1.00439 1.00815 0.95221 1.86472 1.76711 1.58216 1.15975 1.22525 0.95843 0.91145 0.99517 1.60993 1.10499 1.13075 1.44925 1.18546 0.86660 0.91624 0.93204 0.93658 1.21672 1.31898 1.05581 0.97411 0.94799 1.25866 0.94818 0.99620 0.97033 1.70047 1.36662 1.29886 1.21123 0.86082 0.80058 0.78537 0.80230 1.19168 1.21196 1.16636 1.20229 0.94888 0.96192 0.93588 1.20916 1.00305 0.92558 1.00169 1.21382 0.98165 0.97538 0.97230 1.21325 0.97867 0.98752 0.98087 1.21312 1.00187 0.92031 1.00368 1.21116 0.99199 0.98733 0.98142 0.92862 0.91828 0.91852 0.90699 0.92116 0.91083 0.91394 0.92528 0.77292 0.91889 0.97135 0.84838 0.92450 0.87619 0.84393 0.83507 0.84040 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.32 71.98 0.67 -2.26 16 2 C -0.15 -3.65 5.20 30.59 0.16 -3.49 16 3 C 0.14 4.09 0.85 -10.80 -0.01 4.08 16 4 C -0.12 -3.42 8.20 71.98 0.59 -2.83 16 5 O -0.57 -17.71 11.85 -148.98 -1.77 -19.47 16 6 C 0.04 1.48 4.63 86.30 0.40 1.88 16 7 N -0.67 -27.17 5.05 -499.38 -2.52 -29.69 16 8 C 0.21 9.59 2.15 43.43 0.09 9.68 16 9 H 0.05 2.12 3.98 -2.38 -0.01 2.11 16 10 C -0.53 -28.98 8.60 25.60 0.22 -28.76 16 11 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 12 C 0.03 1.47 5.47 84.65 0.46 1.93 16 13 N -0.94 -56.95 13.96 21.45 0.30 -56.65 16 14 Si 0.93 42.82 27.25 68.60 1.87 44.69 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.24 -10.32 6.31 99.48 0.63 -9.69 16 18 C -0.05 -2.06 4.93 -19.87 -0.10 -2.16 16 19 C -0.12 -4.78 9.28 22.27 0.21 -4.57 16 20 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 21 C -0.14 -4.17 10.05 22.27 0.22 -3.95 16 22 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 23 C -0.15 -5.94 9.67 22.27 0.22 -5.72 16 24 H 0.05 1.17 7.82 -2.39 -0.02 1.15 16 25 H 0.06 1.24 6.35 -2.38 -0.02 1.22 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.07 1.65 6.34 -2.39 -0.02 1.64 16 31 H 0.06 1.78 7.60 -2.39 -0.02 1.76 16 32 H 0.38 10.61 9.04 -74.06 -0.67 9.94 16 33 H 0.06 2.31 7.98 -2.39 -0.02 2.29 16 34 H 0.01 0.44 8.00 -2.39 -0.02 0.42 16 35 H 0.33 14.32 7.28 -89.69 -0.65 13.66 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.11 4.24 7.42 -2.91 -0.02 4.22 16 38 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.11 4.06 8.00 -2.91 -0.02 4.03 16 Total: -1.00 -63.89 330.00 1.08 -62.81 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -0.38 Total: 41.91 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 3.58 Total: -43.60 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -2.22 Total: -86.34 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.77 Total: -19.47 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.87 Total: 44.69 kcal Total: -63.89 1.08 -62.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087027877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.106 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds