Wall clock time and date at job start Mon Mar 30 2020 07:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47156 * 2 1 4 4 C 1.53006 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47037 * 305.00124 * 4 3 2 6 6 O 1.42893 * 109.46689 * 65.00488 * 4 3 2 7 7 C 1.50698 * 109.46716 * 185.00238 * 4 3 2 8 8 C 1.40891 * 126.29135 * 279.97620 * 7 4 3 9 9 C 1.34854 * 107.42024 * 180.02562 * 8 7 4 10 10 N 1.36344 * 108.21402 * 359.97438 * 9 8 7 11 11 C 1.46504 * 125.63253 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47005 * 95.84550 * 11 10 9 13 13 C 1.50704 * 115.55945 * 320.16933 * 12 11 10 14 14 H 1.08001 * 120.00428 * 96.46226 * 13 12 11 15 15 C 1.37880 * 119.99919 * 276.45979 * 13 12 11 16 16 N 1.31514 * 119.99996 * 8.61185 * 15 13 12 17 17 Si 1.86803 * 119.99999 * 188.61726 * 15 13 12 18 18 H 1.48491 * 109.47121 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47213 * 119.99769 * 17 15 13 20 20 H 1.48501 * 109.46801 * 240.00044 * 17 15 13 21 21 C 1.52998 * 117.49960 * 174.48066 * 12 11 10 22 22 C 1.52996 * 60.03050 * 252.51798 * 21 12 11 23 23 C 1.34851 * 126.29374 * 100.29275 * 7 4 3 24 24 H 1.09001 * 109.46634 * 60.00099 * 1 2 3 25 25 H 1.09000 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47208 * 300.00004 * 1 2 3 27 27 H 1.09003 * 109.47445 * 239.99836 * 2 1 3 28 28 H 1.09008 * 109.46852 * 120.00218 * 2 1 3 29 29 H 1.08999 * 109.46874 * 60.00067 * 3 2 1 30 30 H 1.08994 * 109.47371 * 299.99896 * 3 2 1 31 31 H 0.96701 * 114.00761 * 59.99769 * 6 4 3 32 32 H 1.08001 * 126.29194 * 359.97438 * 8 7 4 33 33 H 1.07997 * 125.89294 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47039 * 335.84630 * 11 10 9 35 35 H 1.08997 * 109.46800 * 215.83896 * 11 10 9 36 36 H 0.97001 * 119.99788 * 174.97690 * 16 15 13 37 37 H 1.08998 * 117.49929 * 145.02260 * 21 12 11 38 38 H 1.08996 * 117.49918 * 0.02562 * 21 12 11 39 39 H 1.09009 * 117.50053 * 107.47774 * 22 21 12 40 40 H 1.08999 * 117.50243 * 252.47407 * 22 21 12 41 41 H 1.08004 * 125.88991 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 8 4.0468 0.8729 -1.2201 7 6 4.0723 2.8578 0.1245 8 6 4.1652 3.8037 -0.9155 9 6 4.6621 4.9396 -0.3849 10 7 4.8788 4.7296 0.9448 11 6 5.4136 5.7146 1.8883 12 6 4.2573 6.4066 2.6131 13 6 3.0577 6.7323 1.7610 14 1 2.2108 6.0624 1.7420 15 6 3.0414 7.8857 1.0057 16 7 4.1307 8.6141 0.8940 17 14 1.4719 8.4140 0.1414 18 1 0.3962 7.4299 0.4233 19 1 1.0609 9.7525 0.6359 20 1 1.7111 8.4791 -1.3228 21 6 4.6111 7.3820 3.7375 22 6 4.0040 6.0180 4.0718 23 6 4.5210 3.4499 1.2499 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.7618 1.3472 -2.0132 32 1 3.8900 3.6476 -1.9481 33 1 4.8551 5.8572 -0.9207 34 1 5.9986 6.4571 1.3457 35 1 6.0499 5.2118 2.6166 36 1 4.1405 9.3848 0.3051 37 1 3.9762 8.2593 3.8610 38 1 5.6675 7.5311 3.9606 39 1 4.6611 5.2694 4.5146 40 1 2.9698 5.9980 4.4156 41 1 4.5833 2.9906 2.2255 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091819634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:48 Heat of formation + Delta-G solvation = -9.787648 kcal Electronic energy + Delta-G solvation = -20210.194540 eV Core-core repulsion = 17283.522488 eV Total energy + Delta-G solvation = -2926.672052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89551 -38.75924 -38.02764 -34.90241 -34.04764 -33.02020 -30.55217 -28.77958 -27.67312 -26.83721 -24.16562 -22.97013 -22.03337 -21.46264 -20.73832 -20.29837 -18.58629 -17.61524 -16.75070 -16.51300 -16.43601 -15.85234 -15.54507 -14.94900 -14.78068 -14.62560 -14.19084 -14.12048 -13.64616 -13.43018 -13.17093 -12.96959 -12.92873 -12.79358 -12.59371 -12.57089 -12.40212 -12.19912 -12.03199 -11.63983 -11.49127 -11.44667 -10.87204 -10.78022 -10.52502 -10.02822 -9.07521 -8.71220 -8.14845 -6.21305 1.32564 1.38204 1.46352 1.68914 2.23915 2.38050 2.49568 3.15167 3.42363 3.77659 3.97658 4.18481 4.20801 4.26378 4.29921 4.39025 4.45567 4.55221 4.59956 4.62812 4.72945 4.76901 4.84874 4.94206 4.97006 5.02836 5.06390 5.13700 5.18726 5.30344 5.41209 5.46318 5.53491 5.55604 5.58665 5.73997 5.77150 6.34424 6.36817 6.65764 6.79057 6.86564 6.96022 7.45646 8.92959 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.006002 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.023105 B = 4663.746514 C = 5100.873474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.137 4.137 4 C 0.194 3.806 5 H 0.098 0.902 6 O -0.569 6.569 7 C -0.217 4.217 8 C -0.218 4.218 9 C 0.001 3.999 10 N -0.409 5.409 11 C 0.151 3.849 12 C 0.000 4.000 13 C -0.483 4.483 14 H 0.035 0.965 15 C 0.042 3.958 16 N -0.901 5.901 17 Si 0.930 3.070 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.281 1.281 21 C -0.156 4.156 22 C -0.186 4.186 23 C -0.016 4.016 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.381 0.619 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 -12.179 -0.753 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.175 4.175 4 C 0.135 3.865 5 H 0.116 0.884 6 O -0.375 6.375 7 C -0.224 4.224 8 C -0.243 4.243 9 C -0.132 4.132 10 N -0.079 5.079 11 C 0.029 3.971 12 C -0.001 4.001 13 C -0.521 4.521 14 H 0.054 0.946 15 C -0.159 4.159 16 N -0.539 5.539 17 Si 0.757 3.243 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.207 1.207 21 C -0.194 4.194 22 C -0.223 4.223 23 C -0.148 4.148 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.230 0.770 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.563 -12.124 -0.121 12.137 hybrid contribution -1.149 1.617 -0.854 2.160 sum -1.711 -10.506 -0.976 10.690 Atomic orbital electron populations 1.21780 0.95631 1.01960 1.01552 1.21445 0.95818 0.95610 1.02414 1.22199 0.95461 0.97599 1.02206 1.19984 0.91774 0.87680 0.87094 0.88421 1.86458 1.77815 1.56929 1.16334 1.20162 1.10425 0.98003 0.93770 1.20614 1.10635 0.93625 0.99385 1.21616 1.07593 0.99442 0.84509 1.43887 1.46700 1.09861 1.07487 1.21357 0.95101 0.89425 0.91251 1.19287 0.95171 0.98647 0.86966 1.20310 1.00412 1.04786 1.26622 0.94634 1.25347 0.97699 0.96065 0.96777 1.70018 1.27714 1.18407 1.37771 0.85934 0.81748 0.77936 0.78654 1.20216 1.20854 1.20659 1.22465 0.98961 0.92563 1.05445 1.23083 1.00432 0.98203 1.00586 1.21732 1.07747 0.85388 0.99940 0.93045 0.91706 0.93236 0.91477 0.91819 0.92360 0.92316 0.77033 0.84370 0.84737 0.91347 0.89902 0.93098 0.92327 0.89918 0.88493 0.90945 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.98 0.71 -2.20 16 2 C -0.12 -2.43 5.83 30.59 0.18 -2.26 16 3 C -0.14 -3.51 4.88 30.59 0.15 -3.36 16 4 C 0.19 5.40 3.43 29.85 0.10 5.50 16 5 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 6 O -0.57 -15.40 12.80 -148.98 -1.91 -17.31 16 7 C -0.22 -7.40 5.14 -19.99 -0.10 -7.50 16 8 C -0.22 -7.98 10.29 22.14 0.23 -7.75 16 9 C 0.00 0.04 10.89 83.21 0.91 0.95 16 10 N -0.41 -16.55 2.23 -524.47 -1.17 -17.72 16 11 C 0.15 6.16 6.18 86.38 0.53 6.70 16 12 C 0.00 0.01 1.72 -52.90 -0.09 -0.08 16 13 C -0.48 -25.14 7.71 25.60 0.20 -24.95 16 14 H 0.04 1.98 7.83 -2.91 -0.02 1.95 16 15 C 0.04 2.21 5.39 84.66 0.46 2.66 16 16 N -0.90 -48.41 13.06 21.45 0.28 -48.13 16 17 Si 0.93 43.04 29.55 68.60 2.03 45.07 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 C -0.16 -6.68 9.61 30.59 0.29 -6.39 16 22 C -0.19 -7.26 9.88 30.62 0.30 -6.95 16 23 C -0.02 -0.58 11.35 83.21 0.94 0.36 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.40 7.82 -2.39 -0.02 1.38 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.38 8.45 8.41 -74.06 -0.62 7.83 16 32 H 0.14 4.35 7.82 -2.91 -0.02 4.32 16 33 H 0.13 5.88 8.06 -2.91 -0.02 5.85 16 34 H 0.07 3.04 8.12 -2.39 -0.02 3.02 16 35 H 0.08 2.87 7.95 -2.39 -0.02 2.85 16 36 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 37 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.10 3.17 8.08 -2.38 -0.02 3.15 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.17 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -57.33 343.06 4.41 -52.92 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.36 Total: 30.43 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 4.81 Total: -45.27 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -0.89 Total: -65.85 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.91 Total: -17.31 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -57.33 4.41 -52.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091819634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.137 kcal (2) G-P(sol) polarization free energy of solvation -57.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds