Wall clock time and date at job start Mon Mar 30 2020 07:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47365 * 2 1 4 4 C 1.53004 * 109.47222 * 120.00323 * 2 1 3 5 5 H 1.08999 * 109.47487 * 59.99228 * 4 2 1 6 6 O 1.42903 * 109.46912 * 299.99613 * 4 2 1 7 7 C 1.50697 * 109.47444 * 180.02562 * 4 2 1 8 8 C 1.40886 * 126.29459 * 85.01988 * 7 4 2 9 9 C 1.34854 * 107.41660 * 180.02562 * 8 7 4 10 10 N 1.36332 * 108.22013 * 359.97438 * 9 8 7 11 11 C 1.46505 * 125.63630 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.46983 * 95.84842 * 11 10 9 13 13 C 1.50694 * 115.56167 * 320.16827 * 12 11 10 14 14 H 1.08001 * 120.00126 * 96.46187 * 13 12 11 15 15 C 1.37882 * 120.00130 * 276.46468 * 13 12 11 16 16 N 1.31515 * 119.99830 * 8.60884 * 15 13 12 17 17 Si 1.86802 * 120.00062 * 188.61177 * 15 13 12 18 18 H 1.48494 * 109.47035 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46827 * 119.99965 * 17 15 13 20 20 H 1.48499 * 109.47103 * 239.99912 * 17 15 13 21 21 C 1.53001 * 117.49855 * 174.47958 * 12 11 10 22 22 C 1.52995 * 60.03236 * 252.51829 * 21 12 11 23 23 C 1.34858 * 126.28736 * 265.33533 * 7 4 2 24 24 H 1.09010 * 109.46819 * 299.99850 * 1 2 3 25 25 H 1.08999 * 109.47290 * 59.99848 * 1 2 3 26 26 H 1.08995 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46835 * 239.99766 * 2 1 3 28 28 H 1.08999 * 109.47040 * 300.00305 * 3 2 1 29 29 H 1.09004 * 109.47331 * 60.00536 * 3 2 1 30 30 H 1.08999 * 109.47431 * 179.97438 * 3 2 1 31 31 H 0.96699 * 113.99992 * 300.00476 * 6 4 2 32 32 H 1.07998 * 126.29249 * 0.02562 * 8 7 4 33 33 H 1.08001 * 125.88893 * 179.97438 * 9 8 7 34 34 H 1.08991 * 109.47041 * 335.84423 * 11 10 9 35 35 H 1.09002 * 109.46651 * 215.84507 * 11 10 9 36 36 H 0.96999 * 119.99695 * 174.97839 * 16 15 13 37 37 H 1.09003 * 117.49886 * 145.01623 * 21 12 11 38 38 H 1.08996 * 117.49650 * 0.02814 * 21 12 11 39 39 H 1.09002 * 117.49353 * 107.47745 * 22 21 12 40 40 H 1.08992 * 117.49970 * 252.47317 * 22 21 12 41 41 H 1.07994 * 125.89311 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7490 1.2493 6 8 1.5637 -0.0477 2.4160 7 6 3.5470 -0.7208 1.2496 8 6 4.3805 0.3083 1.7303 9 6 5.6567 -0.0863 1.5454 10 7 5.6416 -1.3216 0.9688 11 6 6.8228 -2.1070 0.6022 12 6 7.1469 -3.0947 1.7248 13 6 6.9826 -2.5638 3.1256 14 1 6.0695 -2.7520 3.6707 15 6 7.9981 -1.8379 3.7112 16 7 9.0360 -1.4635 2.9956 17 14 7.8995 -1.3861 5.5211 18 1 6.6398 -1.9216 6.0970 19 1 9.0604 -1.9690 6.2407 20 1 7.9196 0.0918 5.6642 21 6 8.2737 -4.0998 1.4779 22 6 6.8179 -4.5703 1.4848 23 6 4.3456 -1.7029 0.7844 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.8491 0.8739 2.4821 32 1 4.0569 1.2418 2.1666 33 1 6.5386 0.4788 1.8088 34 1 7.6703 -1.4389 0.4500 35 1 6.6228 -2.6558 -0.3181 36 1 9.7145 -0.8917 3.3876 37 1 8.8963 -4.3770 2.3286 38 1 8.7844 -4.0570 0.5159 39 1 6.3707 -4.8367 0.5271 40 1 6.4828 -5.1573 2.3397 41 1 4.0155 -2.6324 0.3446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091824718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:51 Heat of formation + Delta-G solvation = 8.846343 kcal Electronic energy + Delta-G solvation = -20486.403987 eV Core-core repulsion = 17560.539965 eV Total energy + Delta-G solvation = -2925.864022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49146 -37.79875 -36.48901 -33.46327 -32.04472 -31.38565 -28.63158 -27.09693 -26.37073 -25.41960 -24.25674 -21.26584 -20.16625 -19.75162 -19.09118 -18.85900 -17.02714 -16.12518 -15.55702 -14.89506 -14.67672 -14.26021 -14.13245 -13.58714 -13.29478 -13.10650 -12.76009 -12.44187 -12.13084 -11.96450 -11.87605 -11.55696 -11.46841 -11.23696 -11.03549 -10.99627 -10.88156 -10.69134 -10.56078 -10.37544 -10.27704 -9.78610 -9.54932 -8.97865 -8.57284 -8.25167 -7.53430 -7.20842 -6.13047 -4.16326 3.19381 3.25139 3.34220 3.41251 3.70538 4.02198 4.36993 4.89749 5.08071 5.11906 5.14153 5.17419 5.25055 5.69097 5.73253 5.77014 5.82892 5.88279 5.97134 6.00029 6.06261 6.13720 6.16608 6.21972 6.25220 6.33856 6.39346 6.48337 6.51433 6.58600 6.66420 6.90613 6.99270 7.16505 7.22649 7.34176 7.82121 7.82902 8.01393 8.18594 8.26739 8.43116 8.85345 9.49760 10.95624 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.006007 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.029249 B = 4660.468454 C = 5241.274798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.191 3.809 5 H 0.090 0.910 6 O -0.559 6.559 7 C -0.213 4.213 8 C -0.218 4.218 9 C 0.033 3.967 10 N -0.400 5.400 11 C 0.143 3.857 12 C 0.026 3.974 13 C -0.479 4.479 14 H 0.059 0.941 15 C 0.076 3.924 16 N -0.884 5.884 17 Si 0.887 3.113 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.283 1.283 21 C -0.154 4.154 22 C -0.209 4.209 23 C -0.006 4.006 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.369 0.631 32 H 0.119 0.881 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 3.166 -6.952 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 C -0.207 4.207 4 C 0.131 3.869 5 H 0.108 0.892 6 O -0.365 6.365 7 C -0.220 4.220 8 C -0.242 4.242 9 C -0.100 4.100 10 N -0.070 5.070 11 C 0.021 3.979 12 C 0.026 3.974 13 C -0.517 4.517 14 H 0.078 0.922 15 C -0.127 4.127 16 N -0.521 5.521 17 Si 0.714 3.286 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.192 4.192 22 C -0.246 4.246 23 C -0.138 4.138 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.216 0.784 32 H 0.137 0.863 33 H 0.168 0.832 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.163 2.418 -6.909 11.728 hybrid contribution 0.531 0.698 0.911 1.265 sum -8.632 3.117 -5.998 10.964 Atomic orbital electron populations 1.21780 0.95433 1.01445 1.01365 1.21744 0.95411 0.97416 0.99365 1.21867 1.02676 0.95465 1.00708 1.20008 0.88317 0.95113 0.83418 0.89210 1.86504 1.76365 1.28992 1.44595 1.19725 0.94528 0.97311 1.10410 1.20278 0.92190 1.00397 1.11371 1.21582 0.98137 0.87564 1.02758 1.43852 1.05446 1.13800 1.43897 1.21519 0.85666 0.94726 0.96012 1.19206 0.98096 0.85423 0.94723 1.20298 1.01066 1.34367 0.95982 0.92241 1.24895 0.94805 0.95406 0.97585 1.69964 1.11293 1.34561 1.36250 0.86602 0.78068 0.78200 0.85696 1.19619 1.21068 1.20914 1.22539 0.90367 1.06075 1.00245 1.23075 0.99924 1.01584 1.00038 1.21222 0.83302 0.99997 1.09318 0.92264 0.93393 0.93074 0.90858 0.93445 0.93206 0.90964 0.78368 0.86336 0.83245 0.89329 0.92709 0.93025 0.89877 0.91734 0.91690 0.90299 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.05 37.16 0.34 -1.23 16 2 C -0.12 -1.49 2.80 -90.62 -0.25 -1.75 16 3 C -0.15 -1.77 8.44 37.15 0.31 -1.45 16 4 C 0.19 2.86 3.24 -27.88 -0.09 2.77 16 5 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 6 O -0.56 -8.70 12.51 -35.23 -0.44 -9.14 16 7 C -0.21 -3.73 4.61 -104.82 -0.48 -4.21 16 8 C -0.22 -3.99 8.45 -39.78 -0.34 -4.33 16 9 C 0.03 0.67 10.89 -16.75 -0.18 0.49 16 10 N -0.40 -8.12 2.23 -117.13 -0.26 -8.38 16 11 C 0.14 2.95 6.18 -4.04 -0.02 2.93 16 12 C 0.03 0.61 1.72 -155.63 -0.27 0.34 16 13 C -0.48 -12.54 7.71 -34.44 -0.27 -12.81 16 14 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 15 C 0.08 2.00 5.39 -17.82 -0.10 1.90 16 16 N -0.88 -23.56 13.06 55.43 0.72 -22.84 16 17 Si 0.89 21.11 29.55 -169.99 -5.02 16.09 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.15 -3.38 9.61 -26.73 -0.26 -3.64 16 22 C -0.21 -4.32 9.89 -26.70 -0.26 -4.59 16 23 C -0.01 -0.11 11.35 -16.74 -0.19 -0.30 16 24 H 0.06 0.67 7.68 -51.92 -0.40 0.27 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.54 6.78 -51.93 -0.35 0.19 16 30 H 0.07 0.97 6.05 -51.93 -0.31 0.65 16 31 H 0.37 4.86 6.58 45.56 0.30 5.16 16 32 H 0.12 1.92 7.70 -52.49 -0.40 1.52 16 33 H 0.15 3.11 8.06 -52.49 -0.42 2.69 16 34 H 0.09 1.94 8.12 -51.93 -0.42 1.52 16 35 H 0.05 1.00 7.95 -51.93 -0.41 0.59 16 36 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 37 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -27.45 334.33 -8.22 -35.67 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.20 Total: 9.46 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -2.06 Total: -25.88 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.46 Total: -31.22 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.44 Total: -9.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.45 -8.22 -35.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091824718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.516 kcal (2) G-P(sol) polarization free energy of solvation -27.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds