Wall clock time and date at job start Mon Mar 30 2020 07:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47365 * 2 1 4 4 C 1.53004 * 109.47222 * 120.00323 * 2 1 3 5 5 H 1.08999 * 109.47487 * 59.99228 * 4 2 1 6 6 O 1.42903 * 109.46912 * 299.99613 * 4 2 1 7 7 C 1.50697 * 109.47444 * 180.02562 * 4 2 1 8 8 C 1.40886 * 126.29459 * 85.01988 * 7 4 2 9 9 C 1.34854 * 107.41660 * 180.02562 * 8 7 4 10 10 N 1.36332 * 108.22013 * 359.97438 * 9 8 7 11 11 C 1.46505 * 125.63630 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.46983 * 95.84842 * 11 10 9 13 13 C 1.50694 * 115.56167 * 320.16827 * 12 11 10 14 14 H 1.08001 * 120.00126 * 96.46187 * 13 12 11 15 15 C 1.37882 * 120.00130 * 276.46468 * 13 12 11 16 16 N 1.31515 * 119.99830 * 8.60884 * 15 13 12 17 17 Si 1.86802 * 120.00062 * 188.61177 * 15 13 12 18 18 H 1.48494 * 109.47035 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46827 * 119.99965 * 17 15 13 20 20 H 1.48499 * 109.47103 * 239.99912 * 17 15 13 21 21 C 1.53001 * 117.49855 * 174.47958 * 12 11 10 22 22 C 1.52995 * 60.03236 * 252.51829 * 21 12 11 23 23 C 1.34858 * 126.28736 * 265.33533 * 7 4 2 24 24 H 1.09010 * 109.46819 * 299.99850 * 1 2 3 25 25 H 1.08999 * 109.47290 * 59.99848 * 1 2 3 26 26 H 1.08995 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46835 * 239.99766 * 2 1 3 28 28 H 1.08999 * 109.47040 * 300.00305 * 3 2 1 29 29 H 1.09004 * 109.47331 * 60.00536 * 3 2 1 30 30 H 1.08999 * 109.47431 * 179.97438 * 3 2 1 31 31 H 0.96699 * 113.99992 * 300.00476 * 6 4 2 32 32 H 1.07998 * 126.29249 * 0.02562 * 8 7 4 33 33 H 1.08001 * 125.88893 * 179.97438 * 9 8 7 34 34 H 1.08991 * 109.47041 * 335.84423 * 11 10 9 35 35 H 1.09002 * 109.46651 * 215.84507 * 11 10 9 36 36 H 0.96999 * 119.99695 * 174.97839 * 16 15 13 37 37 H 1.09003 * 117.49886 * 145.01623 * 21 12 11 38 38 H 1.08996 * 117.49650 * 0.02814 * 21 12 11 39 39 H 1.09002 * 117.49353 * 107.47745 * 22 21 12 40 40 H 1.08992 * 117.49970 * 252.47317 * 22 21 12 41 41 H 1.07994 * 125.89311 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7490 1.2493 6 8 1.5637 -0.0477 2.4160 7 6 3.5470 -0.7208 1.2496 8 6 4.3805 0.3083 1.7303 9 6 5.6567 -0.0863 1.5454 10 7 5.6416 -1.3216 0.9688 11 6 6.8228 -2.1070 0.6022 12 6 7.1469 -3.0947 1.7248 13 6 6.9826 -2.5638 3.1256 14 1 6.0695 -2.7520 3.6707 15 6 7.9981 -1.8379 3.7112 16 7 9.0360 -1.4635 2.9956 17 14 7.8995 -1.3861 5.5211 18 1 6.6398 -1.9216 6.0970 19 1 9.0604 -1.9690 6.2407 20 1 7.9196 0.0918 5.6642 21 6 8.2737 -4.0998 1.4779 22 6 6.8179 -4.5703 1.4848 23 6 4.3456 -1.7029 0.7844 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.8491 0.8739 2.4821 32 1 4.0569 1.2418 2.1666 33 1 6.5386 0.4788 1.8088 34 1 7.6703 -1.4389 0.4500 35 1 6.6228 -2.6558 -0.3181 36 1 9.7145 -0.8917 3.3876 37 1 8.8963 -4.3770 2.3286 38 1 8.7844 -4.0570 0.5159 39 1 6.3707 -4.8367 0.5271 40 1 6.4828 -5.1573 2.3397 41 1 4.0155 -2.6324 0.3446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091824718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:51 Heat of formation + Delta-G solvation = -4.539838 kcal Electronic energy + Delta-G solvation = -20486.984455 eV Core-core repulsion = 17560.539965 eV Total energy + Delta-G solvation = -2926.444490 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.94645 -39.05978 -38.13328 -34.52623 -34.04834 -32.87249 -30.03372 -28.17276 -27.81557 -27.25273 -25.60707 -22.97061 -21.52020 -21.16706 -20.74192 -20.19383 -18.60831 -17.66583 -16.92671 -16.62298 -16.04965 -15.90989 -15.53875 -14.96687 -14.73838 -14.53389 -14.15305 -13.71074 -13.62900 -13.33361 -13.20308 -12.97886 -12.88431 -12.84068 -12.75200 -12.53463 -12.42314 -12.05279 -12.02440 -11.65257 -11.59779 -11.41666 -10.86518 -10.74508 -10.51886 -10.02600 -9.02502 -8.67975 -8.15194 -6.21312 1.32245 1.37812 1.46870 1.69944 2.26899 2.38509 2.51932 3.14861 3.42614 3.77201 4.04083 4.12110 4.21548 4.25600 4.28930 4.42603 4.50535 4.55984 4.62968 4.71204 4.75310 4.86983 4.92113 4.93616 4.96142 5.03956 5.13037 5.18427 5.20313 5.30641 5.46479 5.52307 5.54125 5.58802 5.59938 5.74323 5.79196 6.34771 6.38953 6.67653 6.79216 6.87939 6.94740 7.45685 8.92567 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.006007 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.029249 B = 4660.468454 C = 5241.274798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C -0.148 4.148 4 C 0.192 3.808 5 H 0.090 0.910 6 O -0.571 6.571 7 C -0.210 4.210 8 C -0.211 4.211 9 C 0.000 4.000 10 N -0.409 5.409 11 C 0.152 3.848 12 C -0.001 4.001 13 C -0.484 4.484 14 H 0.032 0.968 15 C 0.044 3.956 16 N -0.900 5.900 17 Si 0.929 3.071 18 H -0.281 1.281 19 H -0.281 1.281 20 H -0.280 1.280 21 C -0.155 4.155 22 C -0.187 4.187 23 C -0.018 4.018 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.378 0.622 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.976 3.091 -7.925 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 C -0.205 4.205 4 C 0.133 3.867 5 H 0.108 0.892 6 O -0.378 6.378 7 C -0.217 4.217 8 C -0.235 4.235 9 C -0.133 4.133 10 N -0.080 5.080 11 C 0.030 3.970 12 C -0.001 4.001 13 C -0.522 4.522 14 H 0.050 0.950 15 C -0.157 4.157 16 N -0.538 5.538 17 Si 0.756 3.244 18 H -0.206 1.206 19 H -0.207 1.207 20 H -0.205 1.205 21 C -0.193 4.193 22 C -0.224 4.224 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.227 0.773 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.715 2.351 -7.880 13.507 hybrid contribution 0.968 0.718 1.238 1.727 sum -9.747 3.069 -6.642 12.188 Atomic orbital electron populations 1.21740 0.94059 1.01852 1.01934 1.21658 0.96432 0.97329 0.97805 1.21835 1.01427 0.95372 1.01846 1.20074 0.86476 0.95648 0.84503 0.89239 1.86483 1.76374 1.29874 1.45033 1.20069 0.95962 0.96458 1.09171 1.20529 0.91556 1.01135 1.10297 1.21600 0.98521 0.88351 1.04779 1.43863 1.05858 1.13770 1.44474 1.21336 0.85519 0.93947 0.96209 1.19295 0.99794 0.87003 0.94056 1.20294 0.99872 1.34385 0.97620 0.94975 1.25315 0.94848 0.95677 0.99868 1.70011 1.11659 1.35129 1.37023 0.85953 0.77483 0.78011 0.82925 1.20561 1.20700 1.20540 1.22464 0.90750 1.05900 1.00207 1.23080 0.98690 0.99364 1.01277 1.21680 0.82756 1.01033 1.09534 0.92622 0.91874 0.92806 0.90809 0.92073 0.92373 0.92797 0.77284 0.84617 0.84852 0.91290 0.89835 0.93063 0.92377 0.89794 0.88420 0.91118 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.05 71.98 0.65 -2.00 16 2 C -0.11 -2.53 2.80 -10.79 -0.03 -2.56 16 3 C -0.15 -3.15 8.44 71.98 0.61 -2.54 16 4 C 0.19 5.39 3.24 29.85 0.10 5.48 16 5 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 6 O -0.57 -16.68 12.51 -148.98 -1.86 -18.55 16 7 C -0.21 -7.08 4.61 -19.99 -0.09 -7.17 16 8 C -0.21 -7.59 8.45 22.14 0.19 -7.40 16 9 C 0.00 0.00 10.89 83.22 0.91 0.91 16 10 N -0.41 -16.44 2.23 -524.48 -1.17 -17.61 16 11 C 0.15 6.19 6.18 86.38 0.53 6.72 16 12 C 0.00 -0.03 1.72 -52.91 -0.09 -0.12 16 13 C -0.48 -25.61 7.71 25.60 0.20 -25.41 16 14 H 0.03 1.84 7.83 -2.91 -0.02 1.82 16 15 C 0.04 2.33 5.39 84.66 0.46 2.79 16 16 N -0.90 -48.60 13.06 21.45 0.28 -48.32 16 17 Si 0.93 43.79 29.55 68.60 2.03 45.82 16 18 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 C -0.16 -6.67 9.61 30.59 0.29 -6.38 16 22 C -0.19 -7.40 9.89 30.62 0.30 -7.09 16 23 C -0.02 -0.65 11.35 83.21 0.94 0.29 16 24 H 0.05 1.11 7.68 -2.38 -0.02 1.09 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.12 6.78 -2.39 -0.02 1.11 16 30 H 0.05 1.35 6.05 -2.39 -0.01 1.34 16 31 H 0.38 9.23 6.58 -74.06 -0.49 8.75 16 32 H 0.14 4.26 7.70 -2.91 -0.02 4.24 16 33 H 0.13 5.80 8.06 -2.91 -0.02 5.77 16 34 H 0.07 3.04 8.12 -2.39 -0.02 3.02 16 35 H 0.08 2.86 7.95 -2.39 -0.02 2.85 16 36 H 0.26 13.57 8.32 -92.71 -0.77 12.80 16 37 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.10 3.22 8.08 -2.39 -0.02 3.20 16 40 H 0.07 2.89 8.14 -2.39 -0.02 2.88 16 41 H 0.16 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -58.09 334.33 4.74 -53.35 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.51 Total: 29.79 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 4.96 Total: -44.48 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -0.89 Total: -65.93 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -1.86 Total: -18.55 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -58.09 4.74 -53.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091824718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.806 kcal (2) G-P(sol) polarization free energy of solvation -58.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds