Wall clock time and date at job start Mon Mar 30 2020 07:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46752 * 2 1 4 4 C 1.52997 * 109.47302 * 119.99775 * 2 1 3 5 5 H 1.08997 * 109.47473 * 300.00316 * 4 2 1 6 6 O 1.42898 * 109.46851 * 60.00369 * 4 2 1 7 7 C 1.50700 * 109.47270 * 180.02562 * 4 2 1 8 8 C 1.40887 * 126.29061 * 279.97653 * 7 4 2 9 9 C 1.34854 * 107.42128 * 179.97438 * 8 7 4 10 10 N 1.36343 * 108.21333 * 0.02562 * 9 8 7 11 11 C 1.46497 * 125.63459 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47341 * 95.87696 * 11 10 9 13 13 C 1.50695 * 115.55939 * 320.16400 * 12 11 10 14 14 H 1.08001 * 120.00077 * 96.40398 * 13 12 11 15 15 C 1.37877 * 119.99982 * 276.39868 * 13 12 11 16 16 N 1.31517 * 120.00061 * 8.53722 * 15 13 12 17 17 Si 1.86803 * 119.99880 * 188.53209 * 15 13 12 18 18 H 1.48492 * 109.47170 * 60.00381 * 17 15 13 19 19 H 1.48506 * 109.46889 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47351 * 300.00118 * 17 15 13 21 21 C 1.52999 * 117.49902 * 174.47693 * 12 11 10 22 22 C 1.53001 * 60.03106 * 252.51855 * 21 12 11 23 23 C 1.34851 * 126.29464 * 100.28859 * 7 4 2 24 24 H 1.08996 * 109.47603 * 299.99893 * 1 2 3 25 25 H 1.09001 * 109.47623 * 60.00134 * 1 2 3 26 26 H 1.09008 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47603 * 240.00106 * 2 1 3 28 28 H 1.08999 * 109.47095 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47245 * 299.99561 * 3 2 1 30 30 H 1.08997 * 109.47058 * 60.00275 * 3 2 1 31 31 H 0.96700 * 114.00336 * 59.99999 * 6 4 2 32 32 H 1.08008 * 126.29371 * 359.97438 * 8 7 4 33 33 H 1.07991 * 125.89665 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47249 * 335.87199 * 11 10 9 35 35 H 1.09004 * 109.47060 * 215.87534 * 11 10 9 36 36 H 0.96997 * 119.99821 * 174.97112 * 16 15 13 37 37 H 1.08998 * 117.50278 * 145.02236 * 21 12 11 38 38 H 1.08999 * 117.50256 * 0.02562 * 21 12 11 39 39 H 1.09008 * 117.49622 * 107.47446 * 22 21 12 40 40 H 1.08997 * 117.50413 * 252.47000 * 22 21 12 41 41 H 1.08004 * 125.88811 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 8 1.5637 -2.0685 1.2492 7 6 3.5470 -0.7206 1.2495 8 6 4.3813 -1.5904 0.5200 9 6 5.6572 -1.2554 0.8001 10 7 5.6410 -0.2109 1.6763 11 6 6.8215 0.4545 2.2329 12 6 7.1435 1.6995 1.4039 13 6 6.9788 1.5488 -0.0864 14 1 6.0646 1.8694 -0.5638 15 6 7.9952 1.0018 -0.8405 16 7 9.0356 0.4589 -0.2467 17 14 7.8945 1.0316 -2.7055 18 1 7.8170 2.4383 -3.1747 19 1 9.1029 0.3846 -3.2769 20 1 6.6833 0.2949 -3.1477 21 6 8.2693 2.6081 1.9020 22 6 6.8128 3.0623 2.0177 23 6 4.3448 0.1087 1.9526 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1298 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.8491 -2.5865 0.4842 32 1 4.0585 -2.3805 -0.1419 33 1 6.5396 -1.7326 0.4001 34 1 7.6701 -0.2290 2.2067 35 1 6.6217 0.7463 3.2640 36 1 9.7149 0.0097 -0.7735 37 1 8.8907 3.0970 1.1517 38 1 8.7808 2.3188 2.8200 39 1 6.3659 3.0712 3.0119 40 1 6.4762 3.8501 1.3439 41 1 4.0139 0.8931 2.6172 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091824720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:54 Heat of formation + Delta-G solvation = 6.980166 kcal Electronic energy + Delta-G solvation = -20653.932059 eV Core-core repulsion = 17727.987114 eV Total energy + Delta-G solvation = -2925.944945 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46642 -37.60812 -36.47902 -33.80609 -32.06555 -31.37093 -28.53817 -26.73618 -26.35703 -25.43764 -24.10678 -21.28098 -20.47875 -19.73971 -19.07330 -18.87236 -17.00480 -16.03301 -15.51786 -14.82978 -14.60965 -14.26683 -14.09189 -13.44073 -13.25620 -13.10478 -12.76859 -12.44512 -12.07963 -11.96394 -11.82032 -11.61386 -11.47099 -11.25594 -11.04150 -10.91467 -10.88406 -10.66322 -10.59430 -10.32117 -10.26828 -9.77961 -9.54246 -9.01063 -8.58610 -8.26615 -7.55465 -7.19971 -6.14784 -4.18639 3.20331 3.25900 3.30051 3.34629 3.71052 4.01274 4.33894 4.86920 5.09435 5.13436 5.15932 5.24937 5.42173 5.72434 5.78910 5.84354 5.89262 5.91350 5.99766 6.04493 6.09328 6.18841 6.21769 6.23230 6.33956 6.34576 6.39152 6.57378 6.59897 6.65455 6.72085 6.89833 6.99573 7.16240 7.22078 7.33047 7.79583 7.82632 7.98827 8.18083 8.25429 8.42393 8.81826 9.47213 10.93843 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.006684 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.638850 B = 4188.398570 C = 4553.580478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.144 4.144 4 C 0.192 3.808 5 H 0.089 0.911 6 O -0.563 6.563 7 C -0.212 4.212 8 C -0.222 4.222 9 C 0.034 3.966 10 N -0.400 5.400 11 C 0.142 3.858 12 C 0.028 3.972 13 C -0.482 4.482 14 H 0.058 0.942 15 C 0.077 3.923 16 N -0.883 5.883 17 Si 0.885 3.115 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.154 4.154 22 C -0.209 4.209 23 C -0.003 4.003 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.370 0.630 32 H 0.118 0.882 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.262 0.738 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -1.403 2.567 9.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.201 4.201 4 C 0.132 3.868 5 H 0.107 0.893 6 O -0.368 6.368 7 C -0.219 4.219 8 C -0.246 4.246 9 C -0.099 4.099 10 N -0.070 5.070 11 C 0.020 3.980 12 C 0.027 3.973 13 C -0.519 4.519 14 H 0.076 0.924 15 C -0.126 4.126 16 N -0.520 5.520 17 Si 0.713 3.287 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.193 4.193 22 C -0.246 4.246 23 C -0.136 4.136 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.217 0.783 32 H 0.136 0.864 33 H 0.167 0.833 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.093 -1.066 3.243 9.713 hybrid contribution 0.532 0.018 -1.689 1.771 sum -8.561 -1.049 1.554 8.763 Atomic orbital electron populations 1.21785 0.95522 1.01648 1.00981 1.21734 0.95228 0.97627 0.99185 1.21762 1.02935 0.94794 1.00634 1.20046 0.88284 0.81788 0.96649 0.89318 1.86480 1.76563 1.24072 1.49686 1.19706 0.94522 1.02307 1.05379 1.20298 0.92328 1.04699 1.07264 1.21562 0.98103 0.93003 0.97227 1.43858 1.05463 1.24381 1.33304 1.21528 0.85710 0.96592 0.94164 1.19180 0.98086 0.85381 0.94615 1.20199 1.00960 1.41977 0.88783 0.92362 1.24891 0.94827 0.94782 0.98133 1.69941 1.11094 1.35361 1.35561 0.86745 0.77555 0.78448 0.85948 1.20286 1.21317 1.19927 1.22540 0.90373 1.05653 1.00692 1.23077 0.99932 1.01743 0.99878 1.21221 0.83224 1.03191 1.05948 0.93100 0.93338 0.92458 0.91222 0.90896 0.93436 0.93308 0.78287 0.86375 0.83250 0.89328 0.92693 0.92872 0.89885 0.91731 0.91692 0.90327 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.05 37.15 0.34 -1.35 16 2 C -0.12 -1.65 2.68 -90.62 -0.24 -1.89 16 3 C -0.14 -2.10 8.90 37.16 0.33 -1.77 16 4 C 0.19 2.88 3.01 -27.88 -0.08 2.80 16 5 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 6 O -0.56 -8.34 12.59 -35.23 -0.44 -8.78 16 7 C -0.21 -3.73 4.14 -104.82 -0.43 -4.16 16 8 C -0.22 -4.11 10.29 -39.78 -0.41 -4.52 16 9 C 0.03 0.70 10.89 -16.75 -0.18 0.52 16 10 N -0.40 -8.11 2.23 -117.13 -0.26 -8.37 16 11 C 0.14 2.93 6.17 -4.04 -0.02 2.91 16 12 C 0.03 0.64 1.72 -155.63 -0.27 0.37 16 13 C -0.48 -12.31 7.72 -34.44 -0.27 -12.57 16 14 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 15 C 0.08 1.99 5.39 -17.82 -0.10 1.89 16 16 N -0.88 -23.34 13.06 55.43 0.72 -22.61 16 17 Si 0.89 20.68 29.55 -169.99 -5.02 15.66 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.15 -3.35 9.61 -26.73 -0.26 -3.61 16 22 C -0.21 -4.26 9.89 -26.69 -0.26 -4.52 16 23 C 0.00 -0.06 10.65 -16.75 -0.18 -0.24 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.67 7.68 -51.92 -0.40 0.27 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.28 6.73 -51.93 -0.35 0.93 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.37 4.55 8.42 45.56 0.38 4.93 16 32 H 0.12 1.93 7.82 -52.48 -0.41 1.52 16 33 H 0.15 3.11 8.06 -52.49 -0.42 2.69 16 34 H 0.09 1.94 8.12 -51.93 -0.42 1.52 16 35 H 0.05 1.01 7.95 -51.93 -0.41 0.60 16 36 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 37 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.18 8.08 -51.92 -0.42 0.76 16 40 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 41 H 0.14 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -26.86 339.19 -8.16 -35.02 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.23 Total: 10.12 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -2.04 Total: -26.14 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.46 Total: -30.98 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.44 Total: -8.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.86 -8.16 -35.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091824720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.002 kcal (2) G-P(sol) polarization free energy of solvation -26.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds