Wall clock time and date at job start Mon Mar 30 2020 07:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46752 * 2 1 4 4 C 1.52997 * 109.47302 * 119.99775 * 2 1 3 5 5 H 1.08997 * 109.47473 * 300.00316 * 4 2 1 6 6 O 1.42898 * 109.46851 * 60.00369 * 4 2 1 7 7 C 1.50700 * 109.47270 * 180.02562 * 4 2 1 8 8 C 1.40887 * 126.29061 * 279.97653 * 7 4 2 9 9 C 1.34854 * 107.42128 * 179.97438 * 8 7 4 10 10 N 1.36343 * 108.21333 * 0.02562 * 9 8 7 11 11 C 1.46497 * 125.63459 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47341 * 95.87696 * 11 10 9 13 13 C 1.50695 * 115.55939 * 320.16400 * 12 11 10 14 14 H 1.08001 * 120.00077 * 96.40398 * 13 12 11 15 15 C 1.37877 * 119.99982 * 276.39868 * 13 12 11 16 16 N 1.31517 * 120.00061 * 8.53722 * 15 13 12 17 17 Si 1.86803 * 119.99880 * 188.53209 * 15 13 12 18 18 H 1.48492 * 109.47170 * 60.00381 * 17 15 13 19 19 H 1.48506 * 109.46889 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47351 * 300.00118 * 17 15 13 21 21 C 1.52999 * 117.49902 * 174.47693 * 12 11 10 22 22 C 1.53001 * 60.03106 * 252.51855 * 21 12 11 23 23 C 1.34851 * 126.29464 * 100.28859 * 7 4 2 24 24 H 1.08996 * 109.47603 * 299.99893 * 1 2 3 25 25 H 1.09001 * 109.47623 * 60.00134 * 1 2 3 26 26 H 1.09008 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47603 * 240.00106 * 2 1 3 28 28 H 1.08999 * 109.47095 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47245 * 299.99561 * 3 2 1 30 30 H 1.08997 * 109.47058 * 60.00275 * 3 2 1 31 31 H 0.96700 * 114.00336 * 59.99999 * 6 4 2 32 32 H 1.08008 * 126.29371 * 359.97438 * 8 7 4 33 33 H 1.07991 * 125.89665 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47249 * 335.87199 * 11 10 9 35 35 H 1.09004 * 109.47060 * 215.87534 * 11 10 9 36 36 H 0.96997 * 119.99821 * 174.97112 * 16 15 13 37 37 H 1.08998 * 117.50278 * 145.02236 * 21 12 11 38 38 H 1.08999 * 117.50256 * 0.02562 * 21 12 11 39 39 H 1.09008 * 117.49622 * 107.47446 * 22 21 12 40 40 H 1.08997 * 117.50413 * 252.47000 * 22 21 12 41 41 H 1.08004 * 125.88811 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 8 1.5637 -2.0685 1.2492 7 6 3.5470 -0.7206 1.2495 8 6 4.3813 -1.5904 0.5200 9 6 5.6572 -1.2554 0.8001 10 7 5.6410 -0.2109 1.6763 11 6 6.8215 0.4545 2.2329 12 6 7.1435 1.6995 1.4039 13 6 6.9788 1.5488 -0.0864 14 1 6.0646 1.8694 -0.5638 15 6 7.9952 1.0018 -0.8405 16 7 9.0356 0.4589 -0.2467 17 14 7.8945 1.0316 -2.7055 18 1 7.8170 2.4383 -3.1747 19 1 9.1029 0.3846 -3.2769 20 1 6.6833 0.2949 -3.1477 21 6 8.2693 2.6081 1.9020 22 6 6.8128 3.0623 2.0177 23 6 4.3448 0.1087 1.9526 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1298 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.8491 -2.5865 0.4842 32 1 4.0585 -2.3805 -0.1419 33 1 6.5396 -1.7326 0.4001 34 1 7.6701 -0.2290 2.2067 35 1 6.6217 0.7463 3.2640 36 1 9.7149 0.0097 -0.7735 37 1 8.8907 3.0970 1.1517 38 1 8.7808 2.3188 2.8200 39 1 6.3659 3.0712 3.0119 40 1 6.4762 3.8501 1.3439 41 1 4.0139 0.8931 2.6172 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091824720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:54 Heat of formation + Delta-G solvation = -6.033455 kcal Electronic energy + Delta-G solvation = -20654.496372 eV Core-core repulsion = 17727.987114 eV Total energy + Delta-G solvation = -2926.509258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.93319 -38.91353 -38.08430 -34.92248 -34.03801 -32.86727 -29.93937 -28.08559 -27.67815 -27.27176 -25.47563 -22.96707 -21.71231 -21.37953 -20.65252 -20.25596 -18.58616 -17.60787 -16.87758 -16.62011 -16.05850 -15.81374 -15.52224 -14.87852 -14.73127 -14.48252 -14.13040 -13.87613 -13.61368 -13.33822 -13.17522 -13.03127 -12.93777 -12.85678 -12.70645 -12.60089 -12.41886 -12.12601 -12.02202 -11.74192 -11.58464 -11.39106 -10.87134 -10.72415 -10.51143 -10.01862 -9.05797 -8.67554 -8.13904 -6.20314 1.35838 1.38284 1.43668 1.70981 2.25973 2.38615 2.50791 3.16185 3.43100 3.74273 3.97574 4.16026 4.20529 4.26800 4.31650 4.41227 4.51769 4.56756 4.63565 4.69038 4.76243 4.85365 4.88377 4.91022 4.95978 5.02830 5.08266 5.18049 5.19544 5.31322 5.46204 5.48346 5.54227 5.57944 5.59166 5.75302 5.79230 6.35398 6.38555 6.67351 6.79917 6.88075 6.95302 7.46491 8.93604 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019191 B = 0.006684 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.638850 B = 4188.398570 C = 4553.580478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C -0.140 4.140 4 C 0.197 3.803 5 H 0.096 0.904 6 O -0.569 6.569 7 C -0.209 4.209 8 C -0.220 4.220 9 C 0.002 3.998 10 N -0.409 5.409 11 C 0.151 3.849 12 C 0.003 3.997 13 C -0.484 4.484 14 H 0.037 0.963 15 C 0.043 3.957 16 N -0.902 5.902 17 Si 0.928 3.072 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.277 1.277 21 C -0.157 4.157 22 C -0.186 4.186 23 C -0.012 4.012 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.381 0.619 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 -1.084 3.195 11.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.197 4.197 4 C 0.138 3.862 5 H 0.114 0.886 6 O -0.375 6.375 7 C -0.216 4.216 8 C -0.244 4.244 9 C -0.131 4.131 10 N -0.080 5.080 11 C 0.028 3.972 12 C 0.002 3.998 13 C -0.522 4.522 14 H 0.055 0.945 15 C -0.158 4.158 16 N -0.540 5.540 17 Si 0.755 3.245 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.202 1.202 21 C -0.195 4.195 22 C -0.223 4.223 23 C -0.144 4.144 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.229 0.771 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.979 -0.751 3.861 11.662 hybrid contribution 1.076 -0.075 -1.898 2.183 sum -9.903 -0.825 1.964 10.129 Atomic orbital electron populations 1.21724 0.93584 1.02151 1.01847 1.21666 0.96724 0.96747 0.98121 1.21707 1.00625 0.95668 1.01720 1.20045 0.86380 0.82252 0.97523 0.88624 1.86462 1.76444 1.24021 1.50548 1.20045 0.95980 1.01306 1.04247 1.20599 0.91818 1.04990 1.06997 1.21579 0.98466 0.94244 0.98793 1.43873 1.05909 1.24538 1.33643 1.21352 0.85520 0.95105 0.95178 1.19253 0.99651 0.87243 0.93620 1.20260 0.99903 1.41313 0.90698 0.94485 1.25337 0.94880 0.94911 1.00698 1.70004 1.11528 1.36183 1.36242 0.86078 0.77297 0.78109 0.82996 1.20386 1.21002 1.20234 1.22467 0.90840 1.05524 1.00716 1.23078 0.98545 0.99687 1.00963 1.21651 0.82621 1.03769 1.06334 0.92380 0.92358 0.92145 0.92146 0.94265 0.92684 0.91966 0.77052 0.84567 0.84843 0.91407 0.89983 0.93118 0.92360 0.89980 0.88552 0.90953 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.05 71.98 0.65 -2.17 16 2 C -0.11 -2.90 2.68 -10.80 -0.03 -2.93 16 3 C -0.14 -3.82 8.90 71.98 0.64 -3.18 16 4 C 0.20 5.48 3.01 29.85 0.09 5.57 16 5 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 6 O -0.57 -15.40 12.59 -148.98 -1.88 -17.28 16 7 C -0.21 -7.05 4.14 -19.99 -0.08 -7.13 16 8 C -0.22 -8.02 10.29 22.14 0.23 -7.79 16 9 C 0.00 0.07 10.89 83.21 0.91 0.98 16 10 N -0.41 -16.45 2.23 -524.48 -1.17 -17.62 16 11 C 0.15 6.14 6.17 86.38 0.53 6.67 16 12 C 0.00 0.14 1.72 -52.91 -0.09 0.05 16 13 C -0.48 -25.02 7.72 25.60 0.20 -24.82 16 14 H 0.04 2.03 7.83 -2.91 -0.02 2.01 16 15 C 0.04 2.24 5.39 84.65 0.46 2.69 16 16 N -0.90 -48.49 13.06 21.45 0.28 -48.21 16 17 Si 0.93 42.96 29.55 68.60 2.03 44.99 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 C -0.16 -6.73 9.61 30.59 0.29 -6.43 16 22 C -0.19 -7.22 9.89 30.62 0.30 -6.92 16 23 C -0.01 -0.42 10.65 83.21 0.89 0.46 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.23 7.68 -2.38 -0.02 1.21 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.33 6.73 -2.39 -0.02 1.32 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.38 8.47 8.42 -74.06 -0.62 7.85 16 32 H 0.14 4.31 7.82 -2.91 -0.02 4.29 16 33 H 0.13 5.82 8.06 -2.92 -0.02 5.80 16 34 H 0.07 3.01 8.12 -2.39 -0.02 2.99 16 35 H 0.08 2.84 7.95 -2.39 -0.02 2.83 16 36 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 37 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.10 3.15 8.08 -2.38 -0.02 3.13 16 40 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.16 5.06 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -56.88 339.19 4.61 -52.26 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.37 Total: 30.80 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 4.98 Total: -44.94 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.89 Total: -65.83 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.88 Total: -17.28 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -56.88 4.61 -52.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091824720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.230 kcal (2) G-P(sol) polarization free energy of solvation -56.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds