Wall clock time and date at job start Mon Mar 30 2020 07:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47533 * 2 1 4 4 C 1.53002 * 109.47146 * 239.99951 * 2 1 3 5 5 C 1.50701 * 109.46783 * 60.00142 * 4 2 1 6 6 H 1.07994 * 120.00066 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99613 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00204 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99778 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46991 * 119.99851 * 9 7 5 12 12 H 1.48500 * 109.47270 * 240.00073 * 9 7 5 13 13 C 1.53003 * 109.47033 * 120.00504 * 2 1 3 14 14 N 1.46502 * 109.46905 * 299.99537 * 13 2 1 15 15 C 1.39675 * 119.99909 * 180.02562 * 14 13 2 16 16 C 1.38927 * 120.07775 * 0.02562 * 15 14 13 17 17 C 1.38076 * 119.92862 * 179.97438 * 16 15 14 18 18 C 1.38309 * 120.07557 * 359.97438 * 17 16 15 19 19 C 1.38272 * 120.14681 * 359.97438 * 18 17 16 20 20 C 1.38126 * 120.07563 * 0.25962 * 19 18 17 21 21 C 1.50693 * 120.03914 * 179.74621 * 20 19 18 22 22 O 1.42904 * 109.47264 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.47243 * 300.00049 * 1 2 3 24 24 H 1.09003 * 109.47271 * 59.99671 * 1 2 3 25 25 H 1.08994 * 109.47728 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47021 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47030 * 300.00268 * 3 2 1 28 28 H 1.08999 * 109.46638 * 60.00224 * 3 2 1 29 29 H 1.08998 * 109.47231 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47294 * 300.00126 * 4 2 1 31 31 H 0.96998 * 119.99890 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47303 * 179.97438 * 13 2 1 33 33 H 1.08999 * 109.47673 * 59.99405 * 13 2 1 34 34 H 0.96996 * 119.99807 * 0.02562 * 14 13 2 35 35 H 1.08006 * 120.03667 * 359.95612 * 16 15 14 36 36 H 1.07997 * 119.96516 * 180.02562 * 17 16 15 37 37 H 1.07996 * 119.93124 * 180.02562 * 18 17 16 38 38 H 1.08002 * 119.95912 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.47314 * 119.99554 * 21 20 19 40 40 H 1.09006 * 109.47220 * 240.00005 * 21 20 19 41 41 H 0.96698 * 114.00450 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3805 7 6 1.8703 -0.4822 -3.7320 8 7 2.6255 -1.5521 -3.8527 9 14 1.2482 0.3989 -5.2572 10 1 0.4236 1.5659 -4.8530 11 1 2.4036 0.8647 -6.0656 12 1 0.4224 -0.5339 -6.0655 13 6 2.0399 -0.7214 1.2492 14 7 1.5516 -0.0308 2.4454 15 6 1.8895 -0.5077 3.7140 16 6 2.6889 -1.6366 3.8433 17 6 3.0214 -2.1051 5.0988 18 6 2.5601 -1.4516 6.2271 19 6 1.7651 -0.3272 6.1021 20 6 1.4247 0.1440 4.8491 21 6 0.5536 1.3662 4.7138 22 8 0.2109 1.8531 6.0129 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4423 0.0005 27 1 1.6767 1.9562 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 3.1299 -0.7217 -1.2490 30 1 1.6766 -1.7490 -1.2493 31 1 2.8598 -1.8834 -4.7337 32 1 3.1300 -0.7218 1.2490 33 1 1.6765 -1.7490 1.2493 34 1 0.9937 0.7577 2.3564 35 1 3.0496 -2.1473 2.9626 36 1 3.6432 -2.9823 5.2000 37 1 2.8219 -1.8199 7.2080 38 1 1.4062 0.1805 6.9852 39 1 1.0939 2.1388 4.1667 40 1 -0.3559 1.1060 4.1721 41 1 -0.3505 2.6404 6.0024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092142513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:16 Heat of formation + Delta-G solvation = -44.439935 kcal Electronic energy + Delta-G solvation = -19823.813918 eV Core-core repulsion = 16895.639230 eV Total energy + Delta-G solvation = -2928.174688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.67920 -37.54807 -36.63589 -34.26695 -32.32609 -31.37173 -29.07486 -27.04510 -26.54211 -25.97754 -25.78206 -23.05116 -21.27021 -21.03676 -18.31716 -17.61197 -16.88096 -16.37687 -15.71589 -15.14207 -14.99641 -14.57099 -14.30244 -13.98483 -13.74994 -13.52667 -12.95193 -12.91718 -12.80958 -12.18413 -12.10751 -12.10308 -11.25048 -11.06414 -11.02432 -10.86799 -10.81385 -10.69080 -10.43857 -10.38959 -10.26155 -10.02883 -9.65707 -9.24381 -8.95958 -8.58315 -8.40194 -7.14377 -6.04342 -4.05405 1.56181 1.81834 3.27230 3.35538 3.37823 3.71100 4.02122 4.10079 4.42103 4.93685 5.14728 5.22536 5.29134 5.31513 5.36876 5.42705 5.56891 5.60304 5.72523 5.80638 5.93456 6.13553 6.15157 6.21698 6.23426 6.34585 6.50810 6.59621 6.60090 6.65359 6.79318 6.98859 7.03338 7.04332 7.11010 7.47550 7.57289 7.58567 7.70928 7.94358 7.95501 8.36818 8.99456 9.58077 11.07192 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.004071 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.367507 B = 6875.841254 C = 7527.547473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.131 3.869 14 N -0.739 5.739 15 C 0.232 3.768 16 C -0.200 4.200 17 C -0.071 4.071 18 C -0.194 4.194 19 C -0.050 4.050 20 C -0.182 4.182 21 C 0.128 3.872 22 O -0.568 6.568 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.259 0.741 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.396 0.604 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 3.928 16.733 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.071 4.071 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.008 3.992 14 N -0.367 5.367 15 C 0.126 3.874 16 C -0.223 4.223 17 C -0.089 4.089 18 C -0.215 4.215 19 C -0.069 4.069 20 C -0.187 4.187 21 C 0.050 3.950 22 O -0.373 6.373 23 H 0.046 0.954 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.232 0.768 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.143 0.857 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.264 3.195 16.584 17.040 hybrid contribution -0.772 1.087 -1.263 1.836 sum -3.036 4.282 15.322 16.196 Atomic orbital electron populations 1.21742 0.95337 1.01121 1.00120 1.20864 0.95436 0.95845 0.94997 1.21742 1.00494 0.95959 1.00119 1.19095 0.96277 0.95186 0.89577 1.21221 1.31113 1.12068 0.90523 0.92237 1.25010 0.95293 0.95063 0.99097 1.69968 1.37058 1.23034 1.23362 0.86597 0.78632 0.79702 0.83426 1.19806 1.21092 1.21100 1.21614 0.98205 0.95804 0.83621 1.45050 1.56568 1.32641 1.02421 1.17631 0.92676 0.92419 0.84687 1.20648 1.04774 0.98709 0.98181 1.20887 0.97553 0.98417 0.92087 1.20837 1.03821 0.98689 0.98117 1.20654 0.95064 0.94700 0.96438 1.19080 1.06624 1.00183 0.92818 1.20633 0.96462 0.93525 0.84333 1.86428 1.73106 1.49188 1.28621 0.95358 0.91517 0.93385 0.93386 0.91510 0.95364 0.96400 0.96400 0.93080 0.92511 0.92518 0.76810 0.85820 0.86522 0.86873 0.85721 0.93110 0.93099 0.77394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 2 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.41 7.65 -34.44 -0.26 -13.67 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.13 2.17 3.80 -4.04 -0.02 2.15 16 14 N -0.74 -10.75 5.07 -58.63 -0.30 -11.05 16 15 C 0.23 3.40 6.63 -83.79 -0.56 2.84 16 16 C -0.20 -2.88 9.31 -39.39 -0.37 -3.25 16 17 C -0.07 -0.91 10.04 -39.61 -0.40 -1.31 16 18 C -0.19 -2.45 10.04 -39.54 -0.40 -2.85 16 19 C -0.05 -0.67 9.37 -39.61 -0.37 -1.04 16 20 C -0.18 -2.51 5.90 -104.42 -0.62 -3.13 16 21 C 0.13 1.45 6.18 36.00 0.22 1.67 16 22 O -0.57 -5.90 12.14 -35.23 -0.43 -6.33 16 23 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 24 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 28 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 33 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 34 H 0.40 5.36 4.86 -40.82 -0.20 5.16 16 35 H 0.12 1.75 6.74 -52.48 -0.35 1.40 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.58 7.00 -52.49 -0.37 1.21 16 39 H 0.05 0.54 8.05 -51.93 -0.42 0.12 16 40 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.38 2.09 9.12 45.56 0.42 2.50 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -29.72 325.77 -8.09 -37.82 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.54 Total: 5.58 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.46 Total: -21.61 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.44 Total: -36.36 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.43 Total: -6.33 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.72 -8.09 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092142513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.624 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds