Wall clock time and date at job start Mon Mar 30 2020 07:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47533 * 2 1 4 4 C 1.53002 * 109.47146 * 239.99951 * 2 1 3 5 5 C 1.50701 * 109.46783 * 60.00142 * 4 2 1 6 6 H 1.07994 * 120.00066 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99613 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00204 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99778 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46991 * 119.99851 * 9 7 5 12 12 H 1.48500 * 109.47270 * 240.00073 * 9 7 5 13 13 C 1.53003 * 109.47033 * 120.00504 * 2 1 3 14 14 N 1.46502 * 109.46905 * 299.99537 * 13 2 1 15 15 C 1.39675 * 119.99909 * 180.02562 * 14 13 2 16 16 C 1.38927 * 120.07775 * 0.02562 * 15 14 13 17 17 C 1.38076 * 119.92862 * 179.97438 * 16 15 14 18 18 C 1.38309 * 120.07557 * 359.97438 * 17 16 15 19 19 C 1.38272 * 120.14681 * 359.97438 * 18 17 16 20 20 C 1.38126 * 120.07563 * 0.25962 * 19 18 17 21 21 C 1.50693 * 120.03914 * 179.74621 * 20 19 18 22 22 O 1.42904 * 109.47264 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.47243 * 300.00049 * 1 2 3 24 24 H 1.09003 * 109.47271 * 59.99671 * 1 2 3 25 25 H 1.08994 * 109.47728 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47021 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47030 * 300.00268 * 3 2 1 28 28 H 1.08999 * 109.46638 * 60.00224 * 3 2 1 29 29 H 1.08998 * 109.47231 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47294 * 300.00126 * 4 2 1 31 31 H 0.96998 * 119.99890 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47303 * 179.97438 * 13 2 1 33 33 H 1.08999 * 109.47673 * 59.99405 * 13 2 1 34 34 H 0.96996 * 119.99807 * 0.02562 * 14 13 2 35 35 H 1.08006 * 120.03667 * 359.95612 * 16 15 14 36 36 H 1.07997 * 119.96516 * 180.02562 * 17 16 15 37 37 H 1.07996 * 119.93124 * 180.02562 * 18 17 16 38 38 H 1.08002 * 119.95912 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.47314 * 119.99554 * 21 20 19 40 40 H 1.09006 * 109.47220 * 240.00005 * 21 20 19 41 41 H 0.96698 * 114.00450 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3805 7 6 1.8703 -0.4822 -3.7320 8 7 2.6255 -1.5521 -3.8527 9 14 1.2482 0.3989 -5.2572 10 1 0.4236 1.5659 -4.8530 11 1 2.4036 0.8647 -6.0656 12 1 0.4224 -0.5339 -6.0655 13 6 2.0399 -0.7214 1.2492 14 7 1.5516 -0.0308 2.4454 15 6 1.8895 -0.5077 3.7140 16 6 2.6889 -1.6366 3.8433 17 6 3.0214 -2.1051 5.0988 18 6 2.5601 -1.4516 6.2271 19 6 1.7651 -0.3272 6.1021 20 6 1.4247 0.1440 4.8491 21 6 0.5536 1.3662 4.7138 22 8 0.2109 1.8531 6.0129 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4423 0.0005 27 1 1.6767 1.9562 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 3.1299 -0.7217 -1.2490 30 1 1.6766 -1.7490 -1.2493 31 1 2.8598 -1.8834 -4.7337 32 1 3.1300 -0.7218 1.2490 33 1 1.6765 -1.7490 1.2493 34 1 0.9937 0.7577 2.3564 35 1 3.0496 -2.1473 2.9626 36 1 3.6432 -2.9823 5.2000 37 1 2.8219 -1.8199 7.2080 38 1 1.4062 0.1805 6.9852 39 1 1.0939 2.1388 4.1667 40 1 -0.3559 1.1060 4.1721 41 1 -0.3505 2.6404 6.0024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092142513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:15 Heat of formation + Delta-G solvation = -62.816332 kcal Electronic energy + Delta-G solvation = -19824.610779 eV Core-core repulsion = 16895.639230 eV Total energy + Delta-G solvation = -2928.971549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75128 -38.94434 -37.46868 -35.66004 -34.20547 -32.36909 -30.31798 -28.84490 -27.98931 -27.24063 -26.82589 -24.84902 -22.44572 -22.06494 -19.72475 -18.66423 -18.36762 -17.86747 -16.78965 -16.52395 -16.08393 -16.06289 -15.62354 -15.21035 -14.83408 -14.66963 -14.36174 -14.31127 -14.24653 -13.95054 -13.40943 -13.08653 -12.89948 -12.70716 -12.62728 -12.36224 -12.25022 -11.97796 -11.96047 -11.71727 -11.59316 -11.22851 -10.98917 -10.86056 -10.84061 -10.52241 -9.59147 -8.24736 -8.15114 -6.22136 0.54037 0.76908 1.40341 1.42047 1.53086 2.41460 2.55724 2.99553 3.19712 3.34797 3.94704 4.03470 4.09645 4.19788 4.23807 4.31837 4.40248 4.55316 4.59878 4.68251 4.73908 4.74245 4.81657 4.95150 4.96011 5.09687 5.12975 5.22358 5.41982 5.48043 5.48860 5.50308 5.54917 5.65702 5.78412 5.79862 5.89348 6.03869 6.30005 6.44172 6.85977 6.92953 6.94021 7.45545 8.97399 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.004071 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.367507 B = 6875.841254 C = 7527.547473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.120 4.120 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.069 0.931 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.259 1.259 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.147 3.853 14 N -0.733 5.733 15 C 0.214 3.786 16 C -0.218 4.218 17 C -0.077 4.077 18 C -0.192 4.192 19 C -0.061 4.061 20 C -0.189 4.189 21 C 0.130 3.870 22 O -0.580 6.580 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.062 0.938 29 H -0.011 1.011 30 H -0.011 1.011 31 H 0.260 0.740 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.402 0.598 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 5.435 18.162 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.177 4.177 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.087 0.913 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.183 1.183 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.022 3.978 14 N -0.364 5.364 15 C 0.110 3.890 16 C -0.241 4.241 17 C -0.095 4.095 18 C -0.212 4.212 19 C -0.080 4.080 20 C -0.194 4.194 21 C 0.052 3.948 22 O -0.389 6.389 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.240 0.760 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.352 4.734 18.044 18.953 hybrid contribution -0.420 0.589 -1.585 1.742 sum -3.772 5.323 16.459 17.705 Atomic orbital electron populations 1.21664 0.94118 1.00873 1.01070 1.20675 0.96312 0.96138 0.93370 1.21663 0.99935 0.95055 1.01068 1.18961 0.94370 0.94211 0.92073 1.21623 1.30336 1.12016 0.91264 0.91321 1.25892 0.95674 0.95843 1.02531 1.70108 1.38794 1.24849 1.24019 0.85543 0.78087 0.78835 0.79466 1.18323 1.20985 1.20998 1.21228 0.97548 0.95263 0.83730 1.44751 1.57083 1.32837 1.01708 1.17750 0.93497 0.92966 0.84792 1.20808 1.05379 0.99149 0.98766 1.21158 0.97654 0.99106 0.91597 1.21167 1.02811 0.98136 0.99105 1.20876 0.95338 0.95111 0.96637 1.19402 1.06545 1.00917 0.92538 1.20592 0.96466 0.92815 0.84914 1.86374 1.73817 1.50575 1.28121 0.91954 0.92899 0.94275 0.94275 0.92890 0.91964 0.99285 0.99289 0.93153 0.93429 0.93434 0.76045 0.86552 0.84478 0.84539 0.84989 0.92261 0.92257 0.74944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.51 -27.31 7.65 25.60 0.20 -27.11 16 6 H 0.07 3.46 5.68 -2.91 -0.02 3.44 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 8 N -0.94 -56.03 13.29 21.45 0.28 -55.74 16 9 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.15 4.87 3.80 86.38 0.33 5.19 16 14 N -0.73 -20.33 5.07 -339.40 -1.72 -22.05 16 15 C 0.21 6.03 6.63 38.21 0.25 6.28 16 16 C -0.22 -6.16 9.31 22.40 0.21 -5.95 16 17 C -0.08 -1.86 10.04 22.25 0.22 -1.64 16 18 C -0.19 -4.43 10.04 22.29 0.22 -4.21 16 19 C -0.06 -1.51 9.37 22.25 0.21 -1.30 16 20 C -0.19 -4.86 5.90 -19.74 -0.12 -4.98 16 21 C 0.13 2.60 6.18 71.23 0.44 3.04 16 22 O -0.58 -10.44 12.14 -148.98 -1.81 -12.25 16 23 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 24 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 28 H 0.06 1.68 6.86 -2.39 -0.02 1.67 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.05 1.65 7.95 -2.38 -0.02 1.63 16 33 H 0.05 1.65 7.95 -2.39 -0.02 1.63 16 34 H 0.40 9.86 4.86 -92.71 -0.45 9.41 16 35 H 0.12 3.36 6.74 -2.91 -0.02 3.34 16 36 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.13 3.03 7.00 -2.91 -0.02 3.01 16 39 H 0.06 1.09 8.05 -2.39 -0.02 1.07 16 40 H 0.06 1.09 8.07 -2.38 -0.02 1.07 16 41 H 0.40 3.21 9.12 -74.06 -0.68 2.54 16 Total: -1.00 -64.35 325.77 2.36 -61.98 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.10 Total: 20.35 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 3.68 Total: -37.59 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.43 Total: -77.79 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.81 Total: -12.25 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.35 2.36 -61.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092142513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.834 kcal (2) G-P(sol) polarization free energy of solvation -64.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds