Wall clock time and date at job start Mon Mar 30 2020 07:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47410 * 2 1 4 4 O 1.42902 * 109.46961 * 240.00007 * 2 1 3 5 5 C 1.52999 * 109.47250 * 120.00318 * 2 1 3 6 6 C 1.53001 * 109.47328 * 184.99791 * 5 2 1 7 7 N 1.46498 * 109.47108 * 179.97438 * 6 5 2 8 8 C 1.46500 * 120.00184 * 269.99848 * 7 6 5 9 9 C 1.50695 * 109.47360 * 270.00092 * 8 7 6 10 10 H 1.08006 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00437 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99649 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00424 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47228 * 89.99920 * 13 11 9 15 15 H 1.48498 * 109.47336 * 210.00054 * 13 11 9 16 16 H 1.48502 * 109.46761 * 329.99956 * 13 11 9 17 17 C 1.39678 * 119.99677 * 90.00277 * 7 6 5 18 18 C 1.38915 * 120.06984 * 180.02562 * 17 7 6 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 7 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.47092 * 299.99645 * 1 2 3 24 24 H 1.09004 * 109.47158 * 59.99828 * 1 2 3 25 25 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47712 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47101 * 300.00207 * 3 2 1 28 28 H 1.09006 * 109.47349 * 60.00417 * 3 2 1 29 29 H 0.96699 * 114.00298 * 299.99791 * 4 2 1 30 30 H 1.08995 * 109.47254 * 64.99750 * 5 2 1 31 31 H 1.09000 * 109.47175 * 305.00034 * 5 2 1 32 32 H 1.08995 * 109.46987 * 59.99795 * 6 5 2 33 33 H 1.09000 * 109.47190 * 300.00233 * 6 5 2 34 34 H 1.08994 * 109.46748 * 30.00133 * 8 7 6 35 35 H 1.09004 * 109.46919 * 150.00058 * 8 7 6 36 36 H 0.97006 * 120.00477 * 180.02562 * 12 11 9 37 37 H 1.07998 * 120.03739 * 359.69591 * 18 17 7 38 38 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 39 39 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 40 40 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 41 41 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6134 1.3136 7 7 4.0531 -1.3036 2.5101 8 6 4.1930 -0.5723 3.7717 9 6 5.5755 0.0214 3.8576 10 1 6.2796 -0.1311 3.0530 11 6 5.9415 0.7593 4.9633 12 7 5.0842 0.9447 5.9432 13 14 7.6548 1.4958 5.0694 14 1 7.6469 2.8558 4.4730 15 1 8.0694 1.5819 6.4927 16 1 8.6104 0.6352 4.3267 17 6 4.3852 -2.6588 2.4478 18 6 4.8478 -3.3149 3.5815 19 6 5.1749 -4.6551 3.5167 20 6 5.0417 -5.3440 2.3250 21 6 4.5815 -4.6939 1.1945 22 6 4.2527 -3.3539 1.2525 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6768 1.9563 0.8901 29 1 1.7210 -1.5952 -1.2329 30 1 1.7516 -1.7715 1.2055 31 1 1.6054 -0.2619 2.1369 32 1 3.8532 0.4368 1.3573 33 1 3.9994 -1.0729 0.4259 34 1 3.4517 0.2257 3.8133 35 1 4.0386 -1.2556 4.6068 36 1 5.3415 1.4641 6.7210 37 1 4.9559 -2.7764 4.5114 38 1 5.5350 -5.1657 4.3976 39 1 5.2978 -6.3922 2.2771 40 1 4.4783 -5.2350 0.2656 41 1 3.8937 -2.8467 0.3691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092799852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:12 Heat of formation + Delta-G solvation = -33.144400 kcal Electronic energy + Delta-G solvation = -20277.034190 eV Core-core repulsion = 17349.349313 eV Total energy + Delta-G solvation = -2927.684877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.13564 -38.18302 -35.60675 -33.03458 -32.45487 -30.47610 -29.59611 -28.62425 -27.32960 -26.14768 -23.58094 -22.59488 -21.29761 -20.17936 -19.58274 -16.96470 -16.57236 -16.20843 -15.40945 -15.08405 -14.92755 -14.22680 -14.16636 -13.93487 -13.29980 -13.04018 -12.87356 -12.63064 -12.48978 -12.15299 -12.04651 -11.90975 -11.74328 -11.49349 -11.24627 -11.02083 -10.79246 -10.69854 -10.61105 -10.35064 -10.28675 -10.03996 -9.84986 -9.59012 -8.87314 -8.50810 -8.25734 -6.48032 -6.02145 -4.17362 2.11671 2.34019 3.25940 3.32887 3.37779 4.04616 4.31332 4.40725 4.60320 4.91260 4.95506 5.12737 5.21602 5.42729 5.52330 5.58043 5.59476 5.74876 5.78532 5.83081 5.88436 6.00559 6.03639 6.11107 6.15498 6.22176 6.32275 6.38599 6.49620 6.59326 6.66352 6.99109 7.10475 7.19971 7.27261 7.37167 7.63291 7.72348 7.81370 8.16292 8.29771 8.51793 8.92239 9.49616 10.95271 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.007577 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.519642 B = 3694.654234 C = 5439.158045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.129 3.871 3 C -0.143 4.143 4 O -0.561 6.561 5 C -0.162 4.162 6 C 0.129 3.871 7 N -0.611 5.611 8 C 0.251 3.749 9 C -0.530 4.530 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.239 3.761 18 C -0.189 4.189 19 C -0.078 4.078 20 C -0.206 4.206 21 C -0.079 4.079 22 C -0.220 4.220 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.372 0.628 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.034 0.966 36 H 0.263 0.737 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -5.108 -9.687 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 C -0.200 4.200 4 O -0.367 6.367 5 C -0.201 4.201 6 C 0.005 3.995 7 N -0.316 5.316 8 C 0.131 3.869 9 C -0.569 4.569 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.132 3.868 18 C -0.211 4.211 19 C -0.096 4.096 20 C -0.227 4.227 21 C -0.098 4.098 22 C -0.243 4.243 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.219 0.781 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.906 -4.176 -9.573 12.521 hybrid contribution 0.662 -0.053 0.379 0.764 sum -6.244 -4.230 -9.194 11.891 Atomic orbital electron populations 1.22478 0.96163 1.02170 1.02544 1.21187 0.92110 0.93191 0.84699 1.21824 1.02698 0.93388 1.02069 1.86541 1.77378 1.28628 1.44116 1.22729 0.98585 1.00734 0.98026 1.21280 0.91734 0.98153 0.88321 1.47184 1.67085 1.05831 1.11457 1.19241 0.96538 0.91235 0.79877 1.21595 0.98807 1.32341 1.04192 0.92263 1.24950 0.97467 0.96159 0.95446 1.69929 1.34976 1.40357 1.08178 0.86542 0.84460 0.79500 0.77267 1.20624 1.21104 1.19801 1.17950 0.91113 0.84496 0.93221 1.20920 1.06544 0.94795 0.98856 1.20819 0.97779 0.93927 0.97125 1.20654 1.08815 0.99314 0.93874 1.20675 0.97773 0.93957 0.97395 1.20601 1.11758 0.95112 0.96878 0.91574 0.92096 0.92550 0.91149 0.92393 0.91010 0.78072 0.91798 0.90829 0.90472 0.91361 0.95326 0.94794 0.92688 0.85157 0.87191 0.87731 0.87483 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.81 37.15 0.33 -1.52 16 2 C 0.13 1.61 1.09 -90.63 -0.10 1.51 16 3 C -0.14 -1.82 8.35 37.15 0.31 -1.51 16 4 O -0.56 -7.00 12.51 -35.23 -0.44 -7.44 16 5 C -0.16 -2.36 4.81 -26.73 -0.13 -2.49 16 6 C 0.13 2.28 4.57 -4.04 -0.02 2.26 16 7 N -0.61 -12.81 2.59 -173.13 -0.45 -13.25 16 8 C 0.25 6.20 4.91 -5.20 -0.03 6.17 16 9 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 10 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 13 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.24 4.85 6.55 -83.78 -0.55 4.30 16 18 C -0.19 -3.88 9.20 -39.38 -0.36 -4.24 16 19 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16 20 C -0.21 -3.33 10.04 -39.54 -0.40 -3.73 16 21 C -0.08 -1.27 10.04 -39.61 -0.40 -1.66 16 22 C -0.22 -3.88 9.21 -39.38 -0.36 -4.24 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.37 3.44 9.05 45.56 0.41 3.85 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.45 6.27 -51.93 -0.33 1.12 16 33 H 0.07 1.17 5.88 -51.93 -0.31 0.86 16 34 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.03 0.89 6.20 -51.93 -0.32 0.57 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.13 2.94 6.15 -52.49 -0.32 2.61 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.82 6.14 -52.48 -0.32 1.50 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -29.18 333.12 -8.38 -37.56 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.71 Total: 6.63 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -2.52 Total: -20.07 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.29 Total: -38.02 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.44 Total: -7.44 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.18 -8.38 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092799852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.420 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds