Wall clock time and date at job start Mon Mar 30 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38292 * 119.94397 * 2 1 4 4 C 1.38119 * 120.05538 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.02740 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47218 * 145.02622 * 5 4 3 7 7 N 1.46895 * 109.47162 * 25.02545 * 5 4 3 8 8 C 1.50706 * 109.47326 * 265.02501 * 5 4 3 9 9 H 1.07997 * 119.99563 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00304 * 180.02562 * 8 5 4 11 11 N 1.31520 * 119.99835 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 120.00259 * 180.02562 * 10 8 5 13 13 H 1.48499 * 109.47199 * 59.99679 * 12 10 8 14 14 H 1.48499 * 109.47221 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46509 * 299.99739 * 12 10 8 16 16 C 1.38750 * 119.94706 * 0.02833 * 4 3 2 17 17 O 1.35896 * 120.05667 * 179.97438 * 16 4 3 18 18 C 1.38712 * 119.88515 * 0.27355 * 16 4 3 19 19 C 1.50701 * 120.02731 * 179.72990 * 18 16 4 20 20 C 1.53005 * 109.47273 * 179.97438 * 19 18 16 21 21 C 1.53009 * 109.46874 * 299.99435 * 19 18 16 22 22 C 1.52999 * 109.47547 * 59.99356 * 19 18 16 23 23 C 1.38164 * 119.94405 * 359.44703 * 18 16 4 24 24 H 1.09006 * 109.47074 * 89.99845 * 1 2 3 25 25 H 1.08998 * 109.47474 * 209.99620 * 1 2 3 26 26 H 1.08995 * 109.47433 * 330.00120 * 1 2 3 27 27 H 1.07997 * 119.97028 * 0.02562 * 3 2 1 28 28 H 1.00899 * 111.00439 * 176.04724 * 7 5 4 29 29 H 1.00907 * 111.00301 * 299.99983 * 7 5 4 30 30 H 0.97001 * 119.99917 * 180.02562 * 11 10 8 31 31 H 0.96700 * 114.00170 * 89.99970 * 17 16 4 32 32 H 1.08999 * 109.46568 * 59.99727 * 20 19 18 33 33 H 1.09001 * 109.46917 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.46705 * 299.99967 * 20 19 18 35 35 H 1.09003 * 109.46645 * 60.00340 * 21 19 18 36 36 H 1.08996 * 109.47022 * 180.02562 * 21 19 18 37 37 H 1.09000 * 109.46938 * 299.99937 * 21 19 18 38 38 H 1.09000 * 109.47013 * 60.00257 * 22 19 18 39 39 H 1.08996 * 109.47339 * 180.02562 * 22 19 18 40 40 H 1.09000 * 109.46994 * 300.00490 * 22 19 18 41 41 H 1.08003 * 119.97315 * 180.28234 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2010 0.0005 5 6 4.3300 2.5072 0.0011 6 1 5.2409 2.4021 0.5905 7 7 3.4863 3.5574 0.5869 8 6 4.6879 2.8815 -1.4142 9 1 4.3996 2.2381 -2.2322 10 6 5.3835 4.0453 -1.6646 11 7 5.7342 4.8291 -0.6684 12 14 5.8265 4.5097 -3.4189 13 1 4.5852 4.6538 -4.2213 14 1 6.5672 5.7967 -3.4183 15 1 6.6786 3.4478 -4.0117 16 6 4.2734 0.0001 0.0005 17 8 5.6324 0.0001 0.0005 18 6 3.5787 -1.2005 -0.0059 19 6 4.3303 -2.5067 -0.0121 20 6 3.3344 -3.6682 -0.0177 21 6 5.2103 -2.5827 -1.2615 22 6 5.2094 -2.5953 1.2370 23 6 2.1970 -1.1978 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5138 27 1 1.6559 2.1328 0.0004 28 1 3.9903 4.4286 0.6578 29 1 2.6349 3.6742 0.0580 30 1 6.2232 5.6481 -0.8446 31 1 6.0257 0.0001 0.8839 32 1 2.7079 -3.6052 -0.9074 33 1 3.8781 -4.6129 -0.0227 34 1 2.7078 -3.6138 0.8725 35 1 5.9198 -1.7552 -1.2570 36 1 5.7535 -3.5276 -1.2663 37 1 4.5840 -2.5196 -2.1514 38 1 4.5825 -2.5411 2.1270 39 1 5.7533 -3.5398 1.2322 40 1 5.9189 -1.7678 1.2414 41 1 1.6557 -2.1324 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095783234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:06 Heat of formation + Delta-G solvation = -40.743967 kcal Electronic energy + Delta-G solvation = -20781.463187 eV Core-core repulsion = 17853.448768 eV Total energy + Delta-G solvation = -2928.014419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.93331 -36.54560 -36.19072 -34.41571 -31.66557 -30.60647 -28.89993 -27.29127 -26.99706 -26.27616 -25.34239 -23.10604 -21.67107 -19.68074 -18.34681 -17.56934 -16.44360 -15.67014 -15.25712 -14.73209 -14.52556 -14.06842 -13.98296 -13.53878 -13.18229 -13.00581 -12.76861 -12.39737 -12.09012 -12.00482 -11.97403 -11.70846 -11.42565 -11.30849 -11.15614 -11.07389 -10.97689 -10.84096 -10.66048 -10.52104 -10.30255 -9.97521 -9.81834 -9.17870 -8.61747 -7.88726 -7.63577 -7.17634 -6.04257 -4.18225 1.93373 2.12053 3.27705 3.31791 3.36378 4.25751 4.42542 4.84573 4.93508 5.12449 5.19283 5.22930 5.44154 5.48916 5.59558 5.70129 5.79220 5.82455 5.90633 5.92849 5.99367 6.05684 6.09462 6.13788 6.18219 6.25183 6.41459 6.49168 6.61392 6.65856 6.74263 6.81015 7.02878 7.20538 7.27252 7.57922 7.76619 7.80110 8.13462 8.43643 8.71065 8.95952 9.11759 9.51454 10.94128 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.006830 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.675981 B = 4098.536784 C = 4772.914887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.103 4.103 4 C -0.047 4.047 5 C 0.248 3.752 6 H 0.049 0.951 7 N -0.852 5.852 8 C -0.529 4.529 9 H 0.053 0.947 10 C 0.065 3.935 11 N -0.898 5.898 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.101 3.899 17 O -0.479 6.479 18 C -0.100 4.100 19 C -0.018 4.018 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.135 4.135 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.122 0.878 28 H 0.355 0.645 29 H 0.310 0.690 30 H 0.265 0.735 31 H 0.372 0.628 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 -12.712 3.047 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.048 4.048 5 C 0.138 3.862 6 H 0.066 0.934 7 N -0.382 5.382 8 C -0.569 4.569 9 H 0.071 0.929 10 C -0.136 4.136 11 N -0.537 5.537 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.056 3.944 17 O -0.289 6.289 18 C -0.101 4.101 19 C -0.018 4.018 20 C -0.198 4.198 21 C -0.198 4.198 22 C -0.198 4.198 23 C -0.153 4.153 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.172 0.828 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.227 0.773 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.148 -13.000 3.140 14.330 hybrid contribution 0.540 0.844 -1.509 1.812 sum -4.608 -12.156 1.631 13.102 Atomic orbital electron populations 1.20688 0.92072 1.01948 1.01578 1.19823 0.95420 0.93362 1.01779 1.20739 0.93663 0.96934 1.00790 1.20811 0.93816 0.96359 0.93852 1.17799 0.90655 0.84120 0.93632 0.93366 1.59594 1.09086 1.13782 1.55783 1.21674 1.35977 1.06140 0.93074 0.92901 1.24977 0.94966 0.96369 0.97321 1.69729 1.39897 1.13470 1.30634 0.86587 0.78615 0.77606 0.84803 1.20346 1.21237 1.20152 1.18034 0.82848 0.90898 1.02642 1.84918 1.16021 1.96058 1.31892 1.19947 0.93569 0.93657 1.02905 1.19292 0.94671 0.91697 0.96126 1.21948 0.98924 0.97253 1.01646 1.21930 0.99729 1.01938 0.96173 1.21894 0.99456 1.01731 0.96675 1.20633 0.92923 0.97090 1.04688 0.91912 0.92389 0.91869 0.86039 0.82835 0.87986 0.92544 0.77272 0.92550 0.92938 0.92600 0.90286 0.93476 0.93259 0.92975 0.92835 0.91943 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 36.00 0.36 -1.04 16 2 C -0.10 -1.76 5.88 -104.60 -0.62 -2.38 16 3 C -0.10 -2.04 8.92 -39.61 -0.35 -2.40 16 4 C -0.05 -1.04 5.01 -104.48 -0.52 -1.56 16 5 C 0.25 6.22 2.67 -70.02 -0.19 6.03 16 6 H 0.05 1.33 7.69 -51.93 -0.40 0.93 16 7 N -0.85 -20.34 8.79 -6.65 -0.06 -20.40 16 8 C -0.53 -14.60 8.71 -34.44 -0.30 -14.90 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.07 1.79 5.38 -17.82 -0.10 1.70 16 11 N -0.90 -25.02 11.54 55.43 0.64 -24.38 16 12 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.10 2.00 6.27 -39.22 -0.25 1.76 16 17 O -0.48 -9.22 9.19 -19.41 -0.18 -9.40 16 18 C -0.10 -1.71 4.77 -104.47 -0.50 -2.21 16 19 C -0.02 -0.25 0.75 -155.65 -0.12 -0.37 16 20 C -0.14 -1.66 7.13 37.16 0.27 -1.39 16 21 C -0.14 -2.05 8.26 37.16 0.31 -1.74 16 22 C -0.14 -1.76 8.26 37.16 0.31 -1.45 16 23 C -0.14 -2.20 8.63 -39.61 -0.34 -2.54 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.12 2.37 6.29 -52.49 -0.33 2.04 16 28 H 0.36 9.09 7.08 -39.29 -0.28 8.82 16 29 H 0.31 7.06 7.20 -39.29 -0.28 6.78 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.37 5.77 7.59 45.56 0.35 6.12 16 32 H 0.06 0.66 7.53 -51.93 -0.39 0.27 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.63 7.50 -51.93 -0.39 0.24 16 35 H 0.08 1.31 6.14 -51.93 -0.32 0.99 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.79 5.33 -51.93 -0.28 0.52 16 41 H 0.12 1.60 5.89 -52.48 -0.31 1.29 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -29.06 320.33 -7.38 -36.43 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -5.55 Total: 18.83 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.04 Total: -22.50 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.58 Total: -44.77 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.18 Total: -9.40 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.06 -7.38 -36.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095783234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.310 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds