Wall clock time and date at job start Mon Mar 30 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38292 * 119.94397 * 2 1 4 4 C 1.38119 * 120.05538 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.02740 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47218 * 145.02622 * 5 4 3 7 7 N 1.46895 * 109.47162 * 25.02545 * 5 4 3 8 8 C 1.50706 * 109.47326 * 265.02501 * 5 4 3 9 9 H 1.07997 * 119.99563 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00304 * 180.02562 * 8 5 4 11 11 N 1.31520 * 119.99835 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 120.00259 * 180.02562 * 10 8 5 13 13 H 1.48499 * 109.47199 * 59.99679 * 12 10 8 14 14 H 1.48499 * 109.47221 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46509 * 299.99739 * 12 10 8 16 16 C 1.38750 * 119.94706 * 0.02833 * 4 3 2 17 17 O 1.35896 * 120.05667 * 179.97438 * 16 4 3 18 18 C 1.38712 * 119.88515 * 0.27355 * 16 4 3 19 19 C 1.50701 * 120.02731 * 179.72990 * 18 16 4 20 20 C 1.53005 * 109.47273 * 179.97438 * 19 18 16 21 21 C 1.53009 * 109.46874 * 299.99435 * 19 18 16 22 22 C 1.52999 * 109.47547 * 59.99356 * 19 18 16 23 23 C 1.38164 * 119.94405 * 359.44703 * 18 16 4 24 24 H 1.09006 * 109.47074 * 89.99845 * 1 2 3 25 25 H 1.08998 * 109.47474 * 209.99620 * 1 2 3 26 26 H 1.08995 * 109.47433 * 330.00120 * 1 2 3 27 27 H 1.07997 * 119.97028 * 0.02562 * 3 2 1 28 28 H 1.00899 * 111.00439 * 176.04724 * 7 5 4 29 29 H 1.00907 * 111.00301 * 299.99983 * 7 5 4 30 30 H 0.97001 * 119.99917 * 180.02562 * 11 10 8 31 31 H 0.96700 * 114.00170 * 89.99970 * 17 16 4 32 32 H 1.08999 * 109.46568 * 59.99727 * 20 19 18 33 33 H 1.09001 * 109.46917 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.46705 * 299.99967 * 20 19 18 35 35 H 1.09003 * 109.46645 * 60.00340 * 21 19 18 36 36 H 1.08996 * 109.47022 * 180.02562 * 21 19 18 37 37 H 1.09000 * 109.46938 * 299.99937 * 21 19 18 38 38 H 1.09000 * 109.47013 * 60.00257 * 22 19 18 39 39 H 1.08996 * 109.47339 * 180.02562 * 22 19 18 40 40 H 1.09000 * 109.46994 * 300.00490 * 22 19 18 41 41 H 1.08003 * 119.97315 * 180.28234 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2010 0.0005 5 6 4.3300 2.5072 0.0011 6 1 5.2409 2.4021 0.5905 7 7 3.4863 3.5574 0.5869 8 6 4.6879 2.8815 -1.4142 9 1 4.3996 2.2381 -2.2322 10 6 5.3835 4.0453 -1.6646 11 7 5.7342 4.8291 -0.6684 12 14 5.8265 4.5097 -3.4189 13 1 4.5852 4.6538 -4.2213 14 1 6.5672 5.7967 -3.4183 15 1 6.6786 3.4478 -4.0117 16 6 4.2734 0.0001 0.0005 17 8 5.6324 0.0001 0.0005 18 6 3.5787 -1.2005 -0.0059 19 6 4.3303 -2.5067 -0.0121 20 6 3.3344 -3.6682 -0.0177 21 6 5.2103 -2.5827 -1.2615 22 6 5.2094 -2.5953 1.2370 23 6 2.1970 -1.1978 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3634 0.8899 0.5138 27 1 1.6559 2.1328 0.0004 28 1 3.9903 4.4286 0.6578 29 1 2.6349 3.6742 0.0580 30 1 6.2232 5.6481 -0.8446 31 1 6.0257 0.0001 0.8839 32 1 2.7079 -3.6052 -0.9074 33 1 3.8781 -4.6129 -0.0227 34 1 2.7078 -3.6138 0.8725 35 1 5.9198 -1.7552 -1.2570 36 1 5.7535 -3.5276 -1.2663 37 1 4.5840 -2.5196 -2.1514 38 1 4.5825 -2.5411 2.1270 39 1 5.7533 -3.5398 1.2322 40 1 5.9189 -1.7678 1.2414 41 1 1.6557 -2.1324 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095783234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:06 Heat of formation + Delta-G solvation = -59.326975 kcal Electronic energy + Delta-G solvation = -20782.269006 eV Core-core repulsion = 17853.448768 eV Total energy + Delta-G solvation = -2928.820239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31447 -37.92411 -37.60809 -36.16540 -33.57256 -32.00855 -30.41428 -28.37511 -28.10981 -28.04463 -26.77408 -24.77953 -23.10242 -21.21641 -19.66442 -19.04507 -18.52209 -17.17414 -16.74275 -16.49168 -15.85268 -15.75920 -15.11518 -14.87933 -14.64607 -14.30436 -14.21645 -13.98416 -13.58138 -13.25353 -13.08594 -13.02393 -12.98312 -12.81977 -12.59336 -12.43934 -12.34784 -12.30395 -12.28612 -11.96734 -11.62537 -11.58982 -11.43784 -10.74919 -10.63262 -9.41710 -9.23128 -8.99759 -8.12556 -6.36547 0.52222 0.66329 1.33262 1.34522 1.42853 2.34316 2.89000 3.03849 3.54122 3.74194 3.96835 4.16295 4.19964 4.26697 4.42199 4.47015 4.65718 4.72690 4.79622 4.83770 4.91222 4.92289 4.96106 5.02251 5.04118 5.09421 5.15838 5.24987 5.27519 5.40444 5.44180 5.48470 5.55006 5.61175 5.76534 5.85345 5.98152 6.08557 6.20831 6.63121 6.90561 7.02431 7.08684 7.37631 8.81370 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.006830 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.675981 B = 4098.536784 C = 4772.914887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.101 4.101 3 C -0.121 4.121 4 C -0.085 4.085 5 C 0.256 3.744 6 H 0.012 0.988 7 N -0.842 5.842 8 C -0.545 4.545 9 H 0.034 0.966 10 C 0.024 3.976 11 N -0.916 5.916 12 Si 0.954 3.046 13 H -0.273 1.273 14 H -0.277 1.277 15 H -0.279 1.279 16 C 0.083 3.917 17 O -0.493 6.493 18 C -0.097 4.097 19 C -0.019 4.019 20 C -0.137 4.137 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.344 0.656 29 H 0.317 0.683 30 H 0.267 0.733 31 H 0.383 0.617 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.514 -14.978 2.794 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.101 4.101 3 C -0.139 4.139 4 C -0.086 4.086 5 C 0.146 3.854 6 H 0.030 0.970 7 N -0.370 5.370 8 C -0.585 4.585 9 H 0.052 0.948 10 C -0.176 4.176 11 N -0.556 5.556 12 Si 0.779 3.221 13 H -0.198 1.198 14 H -0.201 1.201 15 H -0.205 1.205 16 C 0.038 3.962 17 O -0.304 6.304 18 C -0.098 4.098 19 C -0.019 4.019 20 C -0.194 4.194 21 C -0.195 4.195 22 C -0.196 4.196 23 C -0.148 4.148 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.159 0.841 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.239 0.761 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.493 -15.272 2.897 16.845 hybrid contribution 0.954 1.496 -1.403 2.262 sum -5.538 -13.775 1.494 14.922 Atomic orbital electron populations 1.20754 0.89028 1.03506 1.02751 1.20233 0.97621 0.92404 0.99870 1.20802 0.92907 0.98193 1.02011 1.20716 0.94943 0.95595 0.97335 1.17513 0.90072 0.86162 0.91660 0.97005 1.59554 1.08922 1.12908 1.55657 1.21846 1.36540 1.06221 0.93897 0.94810 1.25658 0.94829 0.96287 1.00857 1.69821 1.40020 1.13636 1.32103 0.85689 0.78387 0.77400 0.80598 1.19809 1.20147 1.20505 1.18245 0.82964 0.91444 1.03519 1.84878 1.16293 1.96133 1.33074 1.20317 0.94283 0.94014 1.01187 1.19398 0.95174 0.91011 0.96359 1.21926 0.98553 0.96786 1.02159 1.21888 0.99323 1.02131 0.96171 1.21885 0.99258 1.02448 0.96033 1.21088 0.92710 0.98216 1.02775 0.90767 0.89747 0.91487 0.86616 0.84130 0.87315 0.92342 0.76061 0.92428 0.90983 0.91602 0.93000 0.90991 0.94230 0.92604 0.90738 0.93002 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.42 10.01 71.23 0.71 -1.71 16 2 C -0.10 -3.26 5.88 -19.85 -0.12 -3.38 16 3 C -0.12 -4.84 8.92 22.25 0.20 -4.64 16 4 C -0.08 -3.87 5.01 -19.77 -0.10 -3.97 16 5 C 0.26 13.49 2.67 43.43 0.12 13.60 16 6 H 0.01 0.71 7.69 -2.39 -0.02 0.69 16 7 N -0.84 -41.80 8.79 -174.95 -1.54 -43.34 16 8 C -0.55 -31.28 8.71 25.60 0.22 -31.05 16 9 H 0.03 2.02 7.74 -2.91 -0.02 1.99 16 10 C 0.02 1.32 5.38 84.65 0.46 1.77 16 11 N -0.92 -52.25 11.54 21.45 0.25 -52.00 16 12 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 16 C 0.08 3.38 6.27 22.51 0.14 3.52 16 17 O -0.49 -19.84 9.19 -92.38 -0.85 -20.69 16 18 C -0.10 -3.21 4.77 -19.77 -0.09 -3.31 16 19 C -0.02 -0.50 0.75 -52.92 -0.04 -0.54 16 20 C -0.14 -2.68 7.13 71.98 0.51 -2.17 16 21 C -0.14 -3.84 8.26 71.99 0.59 -3.24 16 22 C -0.14 -3.20 8.26 71.98 0.59 -2.61 16 23 C -0.13 -3.90 8.63 22.25 0.19 -3.71 16 24 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 26 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 27 H 0.12 4.61 6.29 -2.91 -0.02 4.59 16 28 H 0.34 18.31 7.08 -89.69 -0.63 17.67 16 29 H 0.32 14.92 7.20 -89.69 -0.65 14.28 16 30 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.38 12.68 7.59 -74.06 -0.56 12.12 16 32 H 0.06 1.12 7.53 -2.39 -0.02 1.10 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.17 7.50 -2.39 -0.02 1.15 16 35 H 0.05 1.72 6.14 -2.39 -0.01 1.71 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 1.29 5.33 -2.39 -0.01 1.28 16 41 H 0.15 3.47 5.89 -2.91 -0.02 3.45 16 Total: -1.00 -64.33 320.33 2.49 -61.84 By element: Atomic # 1 Polarization: 49.40 SS G_CDS: -0.79 Total: 48.61 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.39 Total: -41.42 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -1.29 Total: -95.34 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.85 Total: -20.69 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.33 2.49 -61.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095783234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.516 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds