Wall clock time and date at job start Mon Mar 30 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 H 1.09007 * 109.46477 * 324.99652 * 3 2 1 5 5 C 1.53002 * 109.47216 * 84.99538 * 3 2 1 6 6 C 1.50694 * 109.47297 * 205.00043 * 3 2 1 7 7 C 1.38170 * 120.02692 * 339.99454 * 6 3 2 8 8 C 1.38243 * 120.05345 * 180.02562 * 7 6 3 9 9 C 1.38281 * 120.11632 * 359.97361 * 8 7 6 10 10 C 1.50705 * 119.97494 * 180.02562 * 9 8 7 11 11 C 1.38125 * 120.05724 * 0.02953 * 9 8 7 12 12 C 1.38709 * 120.03196 * 159.72122 * 6 3 2 13 13 O 1.35904 * 120.05358 * 359.97438 * 12 6 3 14 14 C 1.42902 * 117.00004 * 179.97438 * 13 12 6 15 15 C 1.53001 * 109.46980 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.46990 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00462 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99952 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00021 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47238 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47239 * 120.00112 * 20 18 16 23 23 H 1.48496 * 109.47578 * 240.00063 * 20 18 16 24 24 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 25 25 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 27 27 H 1.00900 * 110.99922 * 123.94863 * 2 1 3 28 28 H 1.09006 * 109.46607 * 180.02562 * 5 3 2 29 29 H 1.08995 * 109.47126 * 299.99880 * 5 3 2 30 30 H 1.08998 * 109.47253 * 60.00420 * 5 3 2 31 31 H 1.08000 * 119.97288 * 359.97438 * 7 6 3 32 32 H 1.08004 * 119.94312 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47206 * 90.00248 * 10 9 8 34 34 H 1.09003 * 109.46953 * 210.00009 * 10 9 8 35 35 H 1.08998 * 109.47094 * 330.00123 * 10 9 8 36 36 H 1.07997 * 120.03094 * 179.97438 * 11 9 8 37 37 H 1.08993 * 109.47217 * 300.00021 * 14 13 12 38 38 H 1.08997 * 109.46717 * 60.00210 * 14 13 12 39 39 H 1.09006 * 109.46887 * 300.00231 * 15 14 13 40 40 H 1.08999 * 109.47234 * 59.99897 * 15 14 13 41 41 H 0.97000 * 120.00053 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3397 2.0122 -0.5896 5 6 2.0608 1.8927 1.4370 6 6 3.3776 1.3789 -0.6004 7 6 4.1105 0.2093 -0.6634 8 6 5.3787 0.2156 -1.2136 9 6 5.9169 1.3917 -1.7028 10 6 7.2995 1.3949 -2.3025 11 6 5.1884 2.5637 -1.6422 12 6 3.9130 2.5588 -1.0956 13 8 3.1918 3.7094 -1.0403 14 6 3.8065 4.8864 -1.5685 15 6 2.8508 6.0718 -1.4189 16 6 3.4988 7.3128 -1.9764 17 1 4.4930 7.2614 -2.3952 18 6 2.8223 8.5141 -1.9520 19 7 1.6115 8.5767 -1.4426 20 14 3.6258 10.0526 -2.6424 21 1 4.9793 9.7175 -3.1534 22 1 2.7970 10.5885 -3.7521 23 1 3.7397 11.0749 -1.5714 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.8306 -0.5261 0.7814 28 1 2.4511 2.9105 1.4369 29 1 1.0611 1.8873 1.8712 30 1 2.7165 1.2518 2.0265 31 1 3.6925 -0.7105 -0.2817 32 1 5.9498 -0.6998 -1.2623 33 1 7.2322 1.1945 -3.3718 34 1 7.7620 2.3691 -2.1439 35 1 7.9041 0.6236 -1.8256 36 1 5.6093 3.4821 -2.0239 37 1 4.7273 5.0915 -1.0227 38 1 4.0354 4.7346 -2.6233 39 1 1.9296 5.8668 -1.9645 40 1 2.6222 6.2234 -0.3640 41 1 1.1355 9.4217 -1.4257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104328820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:27 Heat of formation + Delta-G solvation = -33.079283 kcal Electronic energy + Delta-G solvation = -19706.180064 eV Core-core repulsion = 16778.498011 eV Total energy + Delta-G solvation = -2927.682053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.02581 -37.44721 -36.65252 -33.43675 -32.51171 -30.49084 -29.99511 -29.20502 -26.68590 -25.34491 -24.64852 -22.68660 -21.82567 -20.85952 -19.94028 -17.40480 -16.37086 -15.93263 -15.73112 -15.29348 -14.93441 -14.55458 -14.20075 -13.89710 -13.71646 -13.58032 -13.16067 -12.91502 -12.44032 -12.32944 -12.32110 -12.12110 -11.94092 -11.70900 -11.42522 -11.15245 -11.12257 -10.87515 -10.79403 -10.65617 -10.31012 -9.80826 -9.65520 -9.28677 -8.50353 -8.45825 -8.40595 -7.66276 -6.11286 -4.15616 1.58151 1.78914 3.25845 3.33084 3.36702 3.89535 3.98056 4.22895 4.41205 4.89054 5.07848 5.11389 5.24877 5.25419 5.35338 5.40304 5.45061 5.50405 5.56735 5.65543 5.78475 5.85696 5.86721 5.93237 5.93814 6.05416 6.06753 6.13415 6.27880 6.37224 6.58380 6.63262 6.72464 6.84023 7.07585 7.15826 7.34667 7.51146 7.63668 7.82042 8.08753 8.23917 8.90207 9.48842 11.00343 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.004858 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.145919 B = 5762.175708 C = 7138.164879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.688 5.688 3 C 0.133 3.867 4 H 0.092 0.908 5 C -0.173 4.173 6 C -0.120 4.120 7 C -0.059 4.059 8 C -0.175 4.175 9 C -0.053 4.053 10 C -0.113 4.113 11 C -0.214 4.214 12 C 0.150 3.850 13 O -0.314 6.314 14 C 0.066 3.934 15 C 0.026 3.974 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.023 0.977 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.337 0.663 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.128 0.872 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -17.432 2.906 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.318 5.318 3 C 0.024 3.976 4 H 0.110 0.890 5 C -0.232 4.232 6 C -0.121 4.121 7 C -0.078 4.078 8 C -0.193 4.193 9 C -0.053 4.053 10 C -0.170 4.170 11 C -0.232 4.232 12 C 0.102 3.898 13 O -0.227 6.227 14 C -0.008 4.008 15 C -0.011 4.011 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.155 0.845 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.978 -17.323 2.326 17.925 hybrid contribution 0.371 1.306 0.417 1.420 sum 4.349 -16.017 2.742 16.822 Atomic orbital electron populations 1.22205 0.87786 1.01468 1.00728 1.60533 1.07715 1.14070 1.49467 1.20196 0.93128 0.88956 0.95360 0.89028 1.22395 1.01303 1.03091 0.96423 1.19035 0.96817 0.91268 1.05006 1.20671 0.92965 0.96908 0.97221 1.20796 0.96695 0.97324 1.04488 1.19647 0.95850 0.92845 0.96969 1.20786 0.93105 1.02541 1.00578 1.21158 0.95223 0.99337 1.07517 1.18954 0.90227 0.86885 0.93703 1.86147 1.43687 1.15589 1.77275 1.23299 0.98131 0.82798 0.96616 1.19111 0.94480 0.88919 0.98569 1.21017 1.02037 0.92768 1.40541 0.92337 1.24984 0.94856 0.99116 0.95199 1.69985 1.11697 1.26221 1.44892 0.86446 0.79483 0.82777 0.78773 1.19627 1.20833 1.20838 0.95891 0.91695 0.91528 0.84514 0.90900 0.92818 0.92819 0.85453 0.86664 0.91275 0.91635 0.91749 0.85391 0.93257 0.93243 0.95476 0.95493 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.50 60.07 0.63 0.92 16 2 N -0.69 -8.06 5.44 -115.24 -0.63 -8.69 16 3 C 0.13 1.90 2.47 -68.87 -0.17 1.73 16 4 H 0.09 1.51 7.50 -51.92 -0.39 1.12 16 5 C -0.17 -2.32 9.14 37.16 0.34 -1.98 16 6 C -0.12 -1.88 5.10 -104.48 -0.53 -2.41 16 7 C -0.06 -0.81 9.32 -39.60 -0.37 -1.18 16 8 C -0.17 -2.30 9.70 -39.56 -0.38 -2.68 16 9 C -0.05 -0.74 5.88 -104.65 -0.62 -1.36 16 10 C -0.11 -1.24 10.01 36.01 0.36 -0.88 16 11 C -0.21 -3.51 8.69 -39.43 -0.34 -3.85 16 12 C 0.15 2.67 6.66 -39.21 -0.26 2.41 16 13 O -0.31 -6.41 9.31 -19.44 -0.18 -6.59 16 14 C 0.07 1.42 4.68 37.16 0.17 1.59 16 15 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 16 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.02 0.23 7.44 -51.93 -0.39 -0.16 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.74 8.06 -51.93 -0.42 0.33 16 27 H 0.34 3.33 8.09 -39.29 -0.32 3.02 16 28 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 29 H 0.05 0.65 7.45 -51.93 -0.39 0.26 16 30 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.13 1.47 6.84 -52.49 -0.36 1.11 16 32 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.13 2.09 6.30 -52.49 -0.33 1.76 16 37 H 0.05 1.02 7.65 -51.93 -0.40 0.62 16 38 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -29.92 337.01 -8.46 -38.39 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.72 Total: 1.74 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -1.73 Total: -20.50 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.11 Total: -34.38 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.18 Total: -6.59 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.92 -8.46 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104328820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.308 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds