Wall clock time and date at job start Mon Mar 30 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 H 1.09007 * 109.46477 * 324.99652 * 3 2 1 5 5 C 1.53002 * 109.47216 * 84.99538 * 3 2 1 6 6 C 1.50694 * 109.47297 * 205.00043 * 3 2 1 7 7 C 1.38170 * 120.02692 * 339.99454 * 6 3 2 8 8 C 1.38243 * 120.05345 * 180.02562 * 7 6 3 9 9 C 1.38281 * 120.11632 * 359.97361 * 8 7 6 10 10 C 1.50705 * 119.97494 * 180.02562 * 9 8 7 11 11 C 1.38125 * 120.05724 * 0.02953 * 9 8 7 12 12 C 1.38709 * 120.03196 * 159.72122 * 6 3 2 13 13 O 1.35904 * 120.05358 * 359.97438 * 12 6 3 14 14 C 1.42902 * 117.00004 * 179.97438 * 13 12 6 15 15 C 1.53001 * 109.46980 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.46990 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00462 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99952 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00021 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47238 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47239 * 120.00112 * 20 18 16 23 23 H 1.48496 * 109.47578 * 240.00063 * 20 18 16 24 24 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 25 25 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 27 27 H 1.00900 * 110.99922 * 123.94863 * 2 1 3 28 28 H 1.09006 * 109.46607 * 180.02562 * 5 3 2 29 29 H 1.08995 * 109.47126 * 299.99880 * 5 3 2 30 30 H 1.08998 * 109.47253 * 60.00420 * 5 3 2 31 31 H 1.08000 * 119.97288 * 359.97438 * 7 6 3 32 32 H 1.08004 * 119.94312 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47206 * 90.00248 * 10 9 8 34 34 H 1.09003 * 109.46953 * 210.00009 * 10 9 8 35 35 H 1.08998 * 109.47094 * 330.00123 * 10 9 8 36 36 H 1.07997 * 120.03094 * 179.97438 * 11 9 8 37 37 H 1.08993 * 109.47217 * 300.00021 * 14 13 12 38 38 H 1.08997 * 109.46717 * 60.00210 * 14 13 12 39 39 H 1.09006 * 109.46887 * 300.00231 * 15 14 13 40 40 H 1.08999 * 109.47234 * 59.99897 * 15 14 13 41 41 H 0.97000 * 120.00053 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3397 2.0122 -0.5896 5 6 2.0608 1.8927 1.4370 6 6 3.3776 1.3789 -0.6004 7 6 4.1105 0.2093 -0.6634 8 6 5.3787 0.2156 -1.2136 9 6 5.9169 1.3917 -1.7028 10 6 7.2995 1.3949 -2.3025 11 6 5.1884 2.5637 -1.6422 12 6 3.9130 2.5588 -1.0956 13 8 3.1918 3.7094 -1.0403 14 6 3.8065 4.8864 -1.5685 15 6 2.8508 6.0718 -1.4189 16 6 3.4988 7.3128 -1.9764 17 1 4.4930 7.2614 -2.3952 18 6 2.8223 8.5141 -1.9520 19 7 1.6115 8.5767 -1.4426 20 14 3.6258 10.0526 -2.6424 21 1 4.9793 9.7175 -3.1534 22 1 2.7970 10.5885 -3.7521 23 1 3.7397 11.0749 -1.5714 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 1.8306 -0.5261 0.7814 28 1 2.4511 2.9105 1.4369 29 1 1.0611 1.8873 1.8712 30 1 2.7165 1.2518 2.0265 31 1 3.6925 -0.7105 -0.2817 32 1 5.9498 -0.6998 -1.2623 33 1 7.2322 1.1945 -3.3718 34 1 7.7620 2.3691 -2.1439 35 1 7.9041 0.6236 -1.8256 36 1 5.6093 3.4821 -2.0239 37 1 4.7273 5.0915 -1.0227 38 1 4.0354 4.7346 -2.6233 39 1 1.9296 5.8668 -1.9645 40 1 2.6222 6.2234 -0.3640 41 1 1.1355 9.4217 -1.4257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104328820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:27 Heat of formation + Delta-G solvation = -50.604756 kcal Electronic energy + Delta-G solvation = -19706.940026 eV Core-core repulsion = 16778.498011 eV Total energy + Delta-G solvation = -2928.442015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30016 -38.82159 -37.71894 -35.50427 -33.64255 -32.28177 -31.10507 -30.51642 -27.81451 -27.00595 -25.83750 -24.02064 -23.18143 -22.39881 -21.20557 -19.00694 -18.06411 -17.29840 -17.01911 -16.87901 -16.50407 -15.95234 -15.33321 -14.99811 -14.79351 -14.71571 -14.50215 -14.32389 -14.03197 -13.77005 -13.41169 -13.26738 -13.16072 -12.93121 -12.80495 -12.65978 -12.49316 -12.46776 -12.27473 -11.97312 -11.72290 -11.51963 -11.51014 -11.33313 -10.64305 -9.58607 -9.44376 -8.91727 -8.28536 -6.42168 0.43798 0.58923 1.39546 1.40397 1.53950 2.27785 2.53215 2.83598 3.06006 3.23131 3.80011 3.98968 4.07527 4.19921 4.22331 4.25269 4.28059 4.37022 4.51755 4.53618 4.62606 4.71016 4.74019 4.83430 4.86120 4.87413 4.93165 5.02352 5.03981 5.17689 5.30373 5.34483 5.44970 5.51445 5.52785 5.67131 5.72702 5.99639 6.04587 6.09882 6.50442 6.59590 6.72575 7.28107 8.84805 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.004858 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.145919 B = 5762.175708 C = 7138.164879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.685 5.685 3 C 0.138 3.862 4 H 0.059 0.941 5 C -0.166 4.166 6 C -0.130 4.130 7 C -0.056 4.056 8 C -0.165 4.165 9 C -0.057 4.057 10 C -0.112 4.112 11 C -0.229 4.229 12 C 0.111 3.889 13 O -0.334 6.334 14 C 0.086 3.914 15 C 0.032 3.968 16 C -0.546 4.546 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.975 3.025 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.026 0.974 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.352 0.648 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.056 0.944 38 H 0.054 0.946 39 H -0.003 1.003 40 H -0.002 1.002 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.194 -19.318 2.673 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.316 5.316 3 C 0.027 3.973 4 H 0.077 0.923 5 C -0.225 4.225 6 C -0.131 4.131 7 C -0.074 4.074 8 C -0.183 4.183 9 C -0.057 4.057 10 C -0.168 4.168 11 C -0.248 4.248 12 C 0.065 3.935 13 O -0.248 6.248 14 C 0.012 3.988 15 C -0.005 4.005 16 C -0.584 4.584 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.799 3.201 21 H -0.182 1.182 22 H -0.202 1.202 23 H -0.201 1.201 24 H 0.044 0.956 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.171 0.829 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.015 0.985 40 H 0.017 0.983 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.892 -19.242 2.099 20.233 hybrid contribution -0.236 1.734 0.519 1.826 sum 5.656 -17.508 2.618 18.584 Atomic orbital electron populations 1.22248 0.86927 1.02866 1.00178 1.60487 1.08542 1.12323 1.50251 1.20006 0.92196 0.90004 0.95056 0.92322 1.22320 1.02154 1.01555 0.96440 1.19299 0.97575 0.91258 1.04966 1.21006 0.93074 0.96807 0.96534 1.21253 0.96467 0.98210 1.02385 1.20047 0.97063 0.92191 0.96423 1.20848 0.91346 1.03444 1.01195 1.21273 0.95075 1.00365 1.08079 1.19323 0.91291 0.86479 0.96368 1.86075 1.44539 1.16170 1.78051 1.22798 0.96686 0.82272 0.97057 1.18928 0.94368 0.91142 0.96093 1.21421 1.02626 0.93586 1.40760 0.91302 1.26022 0.95339 1.02902 0.95270 1.70124 1.13382 1.27429 1.46034 0.85248 0.78882 0.77924 0.78080 1.18194 1.20179 1.20125 0.95570 0.89217 0.93045 0.82923 0.93987 0.91792 0.90888 0.82866 0.83120 0.90216 0.91761 0.89353 0.86121 0.92587 0.92769 0.98491 0.98336 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.50 127.69 1.34 1.87 16 2 N -0.68 -15.07 5.44 -518.52 -2.82 -17.89 16 3 C 0.14 3.99 2.47 44.17 0.11 4.10 16 4 H 0.06 2.07 7.50 -2.38 -0.02 2.06 16 5 C -0.17 -4.50 9.14 71.98 0.66 -3.84 16 6 C -0.13 -4.04 5.10 -19.77 -0.10 -4.14 16 7 C -0.06 -1.39 9.32 22.25 0.21 -1.19 16 8 C -0.17 -3.78 9.70 22.28 0.22 -3.57 16 9 C -0.06 -1.49 5.88 -19.88 -0.12 -1.60 16 10 C -0.11 -2.12 10.01 71.24 0.71 -1.40 16 11 C -0.23 -7.55 8.69 22.37 0.19 -7.36 16 12 C 0.11 4.09 6.66 22.51 0.15 4.24 16 13 O -0.33 -14.56 9.31 -92.47 -0.86 -15.42 16 14 C 0.09 3.93 4.68 71.98 0.34 4.27 16 15 C 0.03 1.78 5.34 29.85 0.16 1.94 16 16 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 17 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 18 C 0.00 0.19 5.46 84.66 0.46 0.65 16 19 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 20 Si 0.98 43.88 29.54 68.60 2.03 45.91 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H 0.03 0.49 7.44 -2.39 -0.02 0.48 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.16 8.06 -2.38 -0.02 1.14 16 27 H 0.35 6.02 8.09 -89.69 -0.73 5.29 16 28 H 0.04 1.39 8.08 -2.38 -0.02 1.37 16 29 H 0.06 1.56 7.45 -2.39 -0.02 1.54 16 30 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 31 H 0.15 2.95 6.84 -2.91 -0.02 2.93 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 35 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 36 H 0.12 4.03 6.30 -2.91 -0.02 4.01 16 37 H 0.06 2.42 7.65 -2.39 -0.02 2.40 16 38 H 0.05 2.36 7.67 -2.39 -0.02 2.35 16 39 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -67.24 337.01 3.47 -63.77 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.28 Total: 17.48 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.56 Total: -37.12 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -2.54 Total: -74.61 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.86 Total: -15.42 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.24 3.47 -63.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104328820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.167 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds