Wall clock time and date at job start Mon Mar 30 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38281 * 119.97459 * 2 1 4 4 C 1.38250 * 120.11168 * 180.02562 * 3 2 1 5 5 C 1.38159 * 120.05374 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.02576 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47016 * 144.99909 * 6 5 4 8 8 C 1.53001 * 109.46672 * 264.99862 * 6 5 4 9 9 N 1.46893 * 109.47003 * 24.99801 * 6 5 4 10 10 C 1.38710 * 119.94821 * 359.95376 * 5 4 3 11 11 O 1.35901 * 120.05829 * 180.02562 * 10 5 4 12 12 C 1.42894 * 116.99956 * 180.02562 * 11 10 5 13 13 C 1.53007 * 109.47146 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47011 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46804 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99930 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99996 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00055 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46874 * 60.00415 * 19 17 15 21 21 H 1.48498 * 109.47254 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47166 * 300.00667 * 19 17 15 23 23 C 1.38125 * 119.96685 * 180.02562 * 2 1 3 24 24 H 1.08991 * 109.47294 * 269.98009 * 1 2 3 25 25 H 1.09005 * 109.46748 * 29.97601 * 1 2 3 26 26 H 1.09001 * 109.47027 * 149.97162 * 1 2 3 27 27 H 1.07999 * 119.94699 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.96840 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47362 * 60.00258 * 8 6 5 30 30 H 1.09005 * 109.46560 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47582 * 299.99723 * 8 6 5 32 32 H 1.00909 * 110.99908 * 179.97438 * 9 6 5 33 33 H 1.00898 * 111.00125 * 303.95280 * 9 6 5 34 34 H 1.09003 * 109.47345 * 299.99594 * 12 11 10 35 35 H 1.09003 * 109.47704 * 59.99947 * 12 11 10 36 36 H 1.09003 * 109.46517 * 299.99917 * 13 12 11 37 37 H 1.08990 * 109.47193 * 59.99548 * 13 12 11 38 38 H 1.09001 * 109.46630 * 299.99542 * 14 13 12 39 39 H 1.08998 * 109.47445 * 59.99972 * 14 13 12 40 40 H 0.96993 * 120.00194 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.03307 * 359.70764 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.2751 0.0070 -0.0016 6 6 5.7822 0.0113 -0.0028 7 1 6.1484 -0.8297 0.5860 8 6 6.2913 -0.1123 -1.4403 9 7 6.2687 1.2677 0.5827 10 6 3.5845 -1.1960 -0.0012 11 8 4.2657 -2.3719 -0.0017 12 6 3.4891 -3.5714 -0.0018 13 6 4.4228 -4.7836 -0.0017 14 6 3.5913 -6.0679 -0.0025 15 6 4.5110 -7.2617 -0.0031 16 1 5.5815 -7.1187 -0.0025 17 6 3.9858 -8.5366 -0.0033 18 7 2.6823 -8.7107 -0.0034 19 14 5.1258 -10.0164 -0.0033 20 1 5.9822 -9.9814 1.2094 21 1 4.3188 -11.2629 -0.0041 22 1 5.9827 -9.9811 -1.2156 23 6 2.1969 -1.1966 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3633 -0.8897 -0.5143 27 1 1.6566 2.1324 0.0004 28 1 4.1176 2.1381 -0.0001 29 1 5.9251 0.7287 -2.0291 30 1 7.3814 -0.1087 -1.4411 31 1 5.9304 -1.0446 -1.8747 32 1 7.2773 1.2948 0.5937 33 1 5.8905 2.0649 0.0933 34 1 2.8606 -3.5975 0.8884 35 1 2.8600 -3.5970 -0.8916 36 1 5.0516 -4.7577 -0.8918 37 1 5.0516 -4.7578 0.8882 38 1 2.9622 -6.0938 0.8873 39 1 2.9629 -6.0934 -0.8927 40 1 2.3128 -9.6075 -0.0039 41 1 1.6570 -2.1318 0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104331097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:21 Heat of formation + Delta-G solvation = -41.770439 kcal Electronic energy + Delta-G solvation = -19394.094141 eV Core-core repulsion = 16466.035210 eV Total energy + Delta-G solvation = -2928.058930 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.27720 -37.69058 -36.18277 -34.05155 -32.08500 -31.53773 -29.90642 -28.78890 -27.27276 -26.50240 -23.69352 -22.70291 -21.69938 -20.73228 -19.80348 -17.60976 -16.78967 -16.12150 -15.85715 -15.73643 -14.74909 -14.50916 -14.33891 -14.10138 -13.82082 -13.51348 -13.39652 -13.08633 -13.02001 -12.37378 -12.22317 -12.09456 -11.84348 -11.66768 -11.53727 -11.07764 -10.97488 -10.84520 -10.62677 -10.55042 -10.35947 -9.75990 -9.53896 -9.18580 -8.93922 -8.62290 -8.39384 -7.91448 -6.04688 -4.07433 1.35562 1.54913 3.31985 3.36104 3.38338 3.53913 3.76814 4.42875 4.43655 4.67331 4.84755 4.92371 5.16711 5.21522 5.25293 5.31453 5.37175 5.50937 5.53759 5.54509 5.63170 5.66392 5.74636 5.80038 5.91914 5.98270 6.05473 6.18455 6.39930 6.49423 6.54549 6.61083 6.64829 6.92677 6.97784 7.04431 7.28871 7.58208 7.69929 7.70233 7.93677 8.35568 8.98528 9.56919 11.06812 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.003892 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.296907 B = 7193.258329 C = 8276.954033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.167 4.167 4 C -0.069 4.069 5 C -0.120 4.120 6 C 0.137 3.863 7 H 0.095 0.905 8 C -0.179 4.179 9 N -0.843 5.843 10 C 0.148 3.852 11 O -0.313 6.313 12 C 0.059 3.941 13 C -0.107 4.107 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.210 4.210 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.342 0.658 33 H 0.335 0.665 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.262 0.738 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 21.107 -1.417 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.185 4.185 4 C -0.088 4.088 5 C -0.121 4.121 6 C 0.025 3.975 7 H 0.113 0.887 8 C -0.238 4.238 9 N -0.373 5.373 10 C 0.101 3.899 11 O -0.226 6.226 12 C -0.015 4.015 13 C -0.145 4.145 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.228 4.228 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.135 20.670 -0.747 20.684 hybrid contribution 0.663 -0.831 -0.948 1.425 sum 0.798 19.839 -1.696 19.927 Atomic orbital electron populations 1.20809 0.91257 1.02729 1.02397 1.19681 0.95860 0.92552 0.96993 1.20813 0.94005 0.97238 1.06448 1.20630 0.93675 0.96713 0.97741 1.19022 0.94934 0.90674 1.07460 1.20079 0.90543 0.93176 0.93663 0.88684 1.22555 1.00676 1.02906 0.97675 1.59004 1.13662 1.03832 1.60790 1.18843 0.90334 0.86130 0.94582 1.86101 1.36569 1.12441 1.87533 1.23196 0.95360 0.82182 1.00807 1.21713 0.98405 0.92490 1.01894 1.19038 0.95120 0.89554 0.97497 1.21147 0.93086 0.90760 1.51026 0.92516 1.25016 0.95071 0.99125 0.95160 1.69946 1.10687 1.22267 1.50572 0.86613 0.80654 0.81797 0.78698 1.20156 1.21244 1.20183 1.21194 0.93037 0.99085 1.09525 0.91055 0.91584 0.91422 0.86352 0.85781 0.93017 0.92587 0.91313 0.84559 0.85080 0.92404 0.92431 0.92273 0.92209 0.96327 0.96353 0.92851 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.05 -0.63 5.88 -104.65 -0.62 -1.25 16 3 C -0.17 -1.93 9.70 -39.56 -0.38 -2.31 16 4 C -0.07 -0.82 9.26 -39.61 -0.37 -1.19 16 5 C -0.12 -1.65 5.07 -104.47 -0.53 -2.18 16 6 C 0.14 1.67 3.33 -68.86 -0.23 1.44 16 7 H 0.10 1.35 7.69 -51.93 -0.40 0.95 16 8 C -0.18 -1.98 9.46 37.16 0.35 -1.63 16 9 N -0.84 -8.32 8.93 -5.65 -0.05 -8.37 16 10 C 0.15 2.31 6.66 -39.22 -0.26 2.05 16 11 O -0.31 -5.39 9.27 -19.43 -0.18 -5.57 16 12 C 0.06 1.05 4.74 37.16 0.18 1.23 16 13 C -0.11 -2.24 5.52 -26.73 -0.15 -2.39 16 14 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 15 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.21 -3.04 8.69 -39.43 -0.34 -3.39 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.12 1.17 6.19 -52.48 -0.32 0.84 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.34 2.77 9.04 -39.29 -0.36 2.41 16 33 H 0.34 2.76 7.01 -39.29 -0.28 2.48 16 34 H 0.06 1.00 7.66 -51.93 -0.40 0.61 16 35 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.13 1.85 6.30 -52.49 -0.33 1.52 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -30.48 337.18 -8.64 -39.12 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.67 Total: 2.52 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.54 Total: -23.37 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.69 Total: -34.34 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.18 Total: -5.57 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.48 -8.64 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104331097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.649 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds