Wall clock time and date at job start Mon Mar 30 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38281 * 119.97459 * 2 1 4 4 C 1.38250 * 120.11168 * 180.02562 * 3 2 1 5 5 C 1.38159 * 120.05374 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.02576 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47016 * 144.99909 * 6 5 4 8 8 C 1.53001 * 109.46672 * 264.99862 * 6 5 4 9 9 N 1.46893 * 109.47003 * 24.99801 * 6 5 4 10 10 C 1.38710 * 119.94821 * 359.95376 * 5 4 3 11 11 O 1.35901 * 120.05829 * 180.02562 * 10 5 4 12 12 C 1.42894 * 116.99956 * 180.02562 * 11 10 5 13 13 C 1.53007 * 109.47146 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47011 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46804 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99930 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99996 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00055 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46874 * 60.00415 * 19 17 15 21 21 H 1.48498 * 109.47254 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47166 * 300.00667 * 19 17 15 23 23 C 1.38125 * 119.96685 * 180.02562 * 2 1 3 24 24 H 1.08991 * 109.47294 * 269.98009 * 1 2 3 25 25 H 1.09005 * 109.46748 * 29.97601 * 1 2 3 26 26 H 1.09001 * 109.47027 * 149.97162 * 1 2 3 27 27 H 1.07999 * 119.94699 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.96840 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47362 * 60.00258 * 8 6 5 30 30 H 1.09005 * 109.46560 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47582 * 299.99723 * 8 6 5 32 32 H 1.00909 * 110.99908 * 179.97438 * 9 6 5 33 33 H 1.00898 * 111.00125 * 303.95280 * 9 6 5 34 34 H 1.09003 * 109.47345 * 299.99594 * 12 11 10 35 35 H 1.09003 * 109.47704 * 59.99947 * 12 11 10 36 36 H 1.09003 * 109.46517 * 299.99917 * 13 12 11 37 37 H 1.08990 * 109.47193 * 59.99548 * 13 12 11 38 38 H 1.09001 * 109.46630 * 299.99542 * 14 13 12 39 39 H 1.08998 * 109.47445 * 59.99972 * 14 13 12 40 40 H 0.96993 * 120.00194 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.03307 * 359.70764 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.2751 0.0070 -0.0016 6 6 5.7822 0.0113 -0.0028 7 1 6.1484 -0.8297 0.5860 8 6 6.2913 -0.1123 -1.4403 9 7 6.2687 1.2677 0.5827 10 6 3.5845 -1.1960 -0.0012 11 8 4.2657 -2.3719 -0.0017 12 6 3.4891 -3.5714 -0.0018 13 6 4.4228 -4.7836 -0.0017 14 6 3.5913 -6.0679 -0.0025 15 6 4.5110 -7.2617 -0.0031 16 1 5.5815 -7.1187 -0.0025 17 6 3.9858 -8.5366 -0.0033 18 7 2.6823 -8.7107 -0.0034 19 14 5.1258 -10.0164 -0.0033 20 1 5.9822 -9.9814 1.2094 21 1 4.3188 -11.2629 -0.0041 22 1 5.9827 -9.9811 -1.2156 23 6 2.1969 -1.1966 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3633 -0.8897 -0.5143 27 1 1.6566 2.1324 0.0004 28 1 4.1176 2.1381 -0.0001 29 1 5.9251 0.7287 -2.0291 30 1 7.3814 -0.1087 -1.4411 31 1 5.9304 -1.0446 -1.8747 32 1 7.2773 1.2948 0.5937 33 1 5.8905 2.0649 0.0933 34 1 2.8606 -3.5975 0.8884 35 1 2.8600 -3.5970 -0.8916 36 1 5.0516 -4.7577 -0.8918 37 1 5.0516 -4.7578 0.8882 38 1 2.9622 -6.0938 0.8873 39 1 2.9629 -6.0934 -0.8927 40 1 2.3128 -9.6075 -0.0039 41 1 1.6570 -2.1318 0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104331097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:21 Heat of formation + Delta-G solvation = -59.830911 kcal Electronic energy + Delta-G solvation = -19394.877302 eV Core-core repulsion = 16466.035210 eV Total energy + Delta-G solvation = -2928.842091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37452 -38.88527 -37.08947 -36.00090 -33.78155 -32.69970 -31.02010 -29.66337 -28.91445 -27.61550 -25.39980 -23.72966 -22.93725 -22.24313 -21.05130 -18.85434 -18.40651 -17.59164 -17.21048 -16.81232 -16.49347 -15.73953 -15.33075 -15.26917 -14.87074 -14.66592 -14.46192 -14.29929 -14.17886 -13.95100 -13.65211 -13.17784 -13.09710 -12.96651 -12.71095 -12.53949 -12.51648 -12.33648 -12.02789 -11.96307 -11.60071 -11.51569 -11.45474 -11.27465 -10.58044 -9.78299 -9.59438 -8.98117 -8.23329 -6.34655 0.36219 0.51232 1.39967 1.42985 1.50983 2.22616 2.42455 2.76989 3.10423 3.56023 3.76923 3.89085 4.00426 4.00600 4.11881 4.21301 4.31110 4.32343 4.42548 4.48040 4.65410 4.73510 4.77660 4.78947 4.82216 4.90371 4.93213 5.02058 5.08452 5.17127 5.29597 5.43471 5.44696 5.53422 5.62732 5.66541 5.78200 5.92748 6.18252 6.23964 6.46834 6.64136 6.80308 7.34686 8.88607 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022588 B = 0.003892 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.296907 B = 7193.258329 C = 8276.954033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.058 4.058 3 C -0.161 4.161 4 C -0.068 4.068 5 C -0.131 4.131 6 C 0.140 3.860 7 H 0.069 0.931 8 C -0.172 4.172 9 N -0.842 5.842 10 C 0.115 3.885 11 O -0.325 6.325 12 C 0.073 3.927 13 C -0.094 4.094 14 C 0.029 3.971 15 C -0.547 4.547 16 H 0.061 0.939 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.227 4.227 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.353 0.647 33 H 0.348 0.652 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.058 0.942 38 H -0.002 1.002 39 H -0.001 1.001 40 H 0.265 0.735 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 22.993 -1.540 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.179 4.179 4 C -0.086 4.086 5 C -0.132 4.132 6 C 0.029 3.971 7 H 0.087 0.913 8 C -0.231 4.231 9 N -0.374 5.374 10 C 0.069 3.931 11 O -0.239 6.239 12 C -0.002 4.002 13 C -0.132 4.132 14 C -0.008 4.008 15 C -0.585 4.585 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.246 4.246 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.168 0.832 28 H 0.170 0.830 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.074 0.926 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.698 22.586 -0.873 22.614 hybrid contribution 0.444 -1.288 -0.900 1.633 sum 1.142 21.298 -1.773 21.402 Atomic orbital electron populations 1.20861 0.89313 1.03681 1.03199 1.20051 0.97414 0.92169 0.96216 1.21239 0.94118 0.98081 1.04433 1.21001 0.94129 0.96980 0.96517 1.19322 0.95851 0.90655 1.07348 1.19903 0.89847 0.93452 0.93917 0.91326 1.22489 1.01550 1.02139 0.96952 1.58928 1.14663 1.03194 1.60664 1.19171 0.91077 0.85897 0.96969 1.86030 1.36702 1.12728 1.88428 1.22814 0.94374 0.81977 1.00995 1.21414 0.98061 0.91908 1.01783 1.18900 0.94876 0.91501 0.95489 1.21595 0.93698 0.92032 1.51188 0.92118 1.25961 0.96711 1.02410 0.94482 1.70073 1.12610 1.23170 1.51284 0.85480 0.78560 0.77688 0.79223 1.19183 1.20643 1.19149 1.21311 0.92860 0.99903 1.10538 0.90219 0.89389 0.91769 0.83156 0.82969 0.91684 0.91145 0.93720 0.83311 0.83731 0.92374 0.92192 0.92222 0.92333 0.98358 0.98283 0.92605 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.01 71.24 0.71 -1.28 16 2 C -0.06 -1.37 5.88 -19.88 -0.12 -1.49 16 3 C -0.16 -3.25 9.70 22.28 0.22 -3.04 16 4 C -0.07 -1.45 9.26 22.25 0.21 -1.24 16 5 C -0.13 -3.49 5.07 -19.77 -0.10 -3.59 16 6 C 0.14 3.34 3.33 44.17 0.15 3.49 16 7 H 0.07 1.99 7.69 -2.39 -0.02 1.97 16 8 C -0.17 -3.66 9.46 71.98 0.68 -2.98 16 9 N -0.84 -14.94 8.93 -171.80 -1.53 -16.48 16 10 C 0.11 3.64 6.66 22.51 0.15 3.79 16 11 O -0.32 -11.62 9.27 -92.44 -0.86 -12.48 16 12 C 0.07 2.73 4.74 71.98 0.34 3.07 16 13 C -0.09 -4.06 5.52 30.60 0.17 -3.90 16 14 C 0.03 1.57 4.97 29.85 0.15 1.72 16 15 C -0.55 -31.48 9.11 25.60 0.23 -31.24 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 0.14 5.46 84.66 0.46 0.61 16 18 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 19 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 C -0.23 -6.67 8.69 22.37 0.19 -6.47 16 24 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.15 8.09 -2.38 -0.02 1.13 16 26 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 27 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.15 2.29 6.19 -2.91 -0.02 2.28 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.35 5.00 9.04 -89.69 -0.81 4.19 16 33 H 0.35 4.68 7.01 -89.70 -0.63 4.05 16 34 H 0.06 2.13 7.66 -2.39 -0.02 2.11 16 35 H 0.06 2.17 7.67 -2.39 -0.02 2.15 16 36 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.12 3.64 6.30 -2.91 -0.02 3.62 16 Total: -1.00 -66.40 337.18 2.94 -63.45 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.42 Total: 18.01 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 3.44 Total: -42.57 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.25 Total: -72.77 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.86 Total: -12.48 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -66.40 2.94 -63.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104331097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.622 kcal (2) G-P(sol) polarization free energy of solvation -66.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds