Wall clock time and date at job start Mon Mar 30 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38172 * 120.03077 * 2 1 4 4 C 1.38241 * 120.05404 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.93829 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47217 * 19.99805 * 5 4 3 7 7 C 1.52996 * 109.47066 * 259.99658 * 5 4 3 8 8 N 1.46903 * 109.46711 * 139.99739 * 5 4 3 9 9 C 1.38285 * 120.11485 * 0.29319 * 4 3 2 10 10 C 1.38123 * 120.05550 * 359.44969 * 9 4 3 11 11 C 1.38715 * 120.02800 * 179.97438 * 2 1 3 12 12 O 1.35895 * 120.05336 * 0.04511 * 11 2 1 13 13 C 1.42905 * 117.00002 * 180.02562 * 12 11 2 14 14 C 1.53003 * 109.47145 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46725 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46727 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00045 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99766 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99976 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99873 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47273 * 59.99577 * 20 18 16 22 22 H 1.48500 * 109.47164 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46920 * 299.99527 * 20 18 16 24 24 H 1.08995 * 109.47344 * 89.99786 * 1 2 3 25 25 H 1.08999 * 109.47241 * 210.00161 * 1 2 3 26 26 H 1.08998 * 109.47045 * 329.99941 * 1 2 3 27 27 H 1.07993 * 119.96713 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.47150 * 299.99904 * 7 5 4 29 29 H 1.09003 * 109.47059 * 60.00109 * 7 5 4 30 30 H 1.09002 * 109.47075 * 180.02562 * 7 5 4 31 31 H 1.00899 * 110.99720 * 179.97438 * 8 5 4 32 32 H 1.00897 * 111.00310 * 303.95280 * 8 5 4 33 33 H 1.08001 * 119.97301 * 179.70317 * 9 4 3 34 34 H 1.07993 * 120.02943 * 180.29188 * 10 9 4 35 35 H 1.09002 * 109.46380 * 299.99502 * 13 12 11 36 36 H 1.09002 * 109.47470 * 59.99388 * 13 12 11 37 37 H 1.08999 * 109.46752 * 299.99243 * 14 13 12 38 38 H 1.08997 * 109.47282 * 59.99960 * 14 13 12 39 39 H 1.09004 * 109.47320 * 299.99389 * 15 14 13 40 40 H 1.09002 * 109.47651 * 59.99756 * 15 14 13 41 41 H 0.97006 * 119.99739 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 0.0005 5 6 4.3325 2.5031 0.0011 6 1 3.6766 3.2995 0.3525 7 6 4.8045 2.8204 -1.4192 8 7 5.4959 2.3981 0.8919 9 6 4.2752 0.0009 -0.0050 10 6 3.5887 -1.1976 0.0003 11 6 2.2011 -1.2010 0.0005 12 8 1.5233 -2.3788 0.0001 13 6 2.3034 -3.5762 0.0013 14 6 1.3730 -4.7909 0.0013 15 6 2.2083 -6.0728 0.0019 16 6 1.2919 -7.2693 0.0012 17 1 0.2211 -7.1293 0.0009 18 6 1.8208 -8.5426 0.0011 19 7 3.1248 -8.7130 0.0010 20 14 0.6850 -10.0257 -0.0004 21 1 -0.1709 -9.9925 -1.2135 22 1 1.4956 -11.2699 0.0003 23 1 -0.1726 -9.9936 1.2115 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6585 2.1315 -0.0004 28 1 5.4606 2.0240 -1.7705 29 1 3.9413 2.8983 -2.0801 30 1 5.3485 3.7650 -1.4187 31 1 6.0170 3.2619 0.9093 32 1 5.2157 2.1257 1.8221 33 1 5.3552 0.0040 -0.0095 34 1 4.1313 -2.1313 0.0007 35 1 2.9330 -3.6003 -0.8881 36 1 2.9314 -3.5999 0.8919 37 1 0.7437 -4.7665 0.8909 38 1 0.7448 -4.7674 -0.8891 39 1 2.8374 -6.0971 -0.8879 40 1 2.8369 -6.0966 0.8921 41 1 3.4969 -9.6089 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122642509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:30 Heat of formation + Delta-G solvation = -44.170121 kcal Electronic energy + Delta-G solvation = -19034.007431 eV Core-core repulsion = 16105.844443 eV Total energy + Delta-G solvation = -2928.162988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18457 -38.03996 -35.59192 -33.94080 -32.50287 -31.65300 -30.06129 -28.62619 -27.13693 -26.47003 -23.79942 -22.97257 -21.74908 -20.17931 -19.79528 -17.74105 -16.57206 -16.13934 -16.05741 -15.78560 -14.91946 -14.72594 -14.49595 -14.18704 -13.81742 -13.52551 -13.04516 -12.83795 -12.76232 -12.33760 -12.23217 -12.17395 -11.90400 -11.75065 -11.62238 -11.05543 -10.97434 -10.90872 -10.61897 -10.53351 -10.36223 -9.74497 -9.52772 -9.17440 -8.98283 -8.74129 -8.38420 -7.85946 -6.03684 -4.06430 1.40805 1.49915 3.32671 3.36736 3.39055 3.56460 3.77555 4.24378 4.44428 4.59994 4.89280 4.91958 5.06749 5.12622 5.32353 5.33297 5.37840 5.51419 5.55961 5.57628 5.64911 5.70958 5.75121 5.78653 5.94973 5.99241 6.00270 6.26446 6.43605 6.51141 6.56065 6.58589 6.64250 6.92654 6.96410 6.99727 7.18025 7.59542 7.71621 7.71992 7.94779 8.36671 8.99589 9.57830 11.07795 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036593 B = 0.003111 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.981014 B = 8997.617272 C = 9570.291555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.127 4.127 3 C -0.080 4.080 4 C -0.135 4.135 5 C 0.136 3.864 6 H 0.038 0.962 7 C -0.141 4.141 8 N -0.845 5.845 9 C -0.056 4.056 10 C -0.211 4.211 11 C 0.141 3.859 12 O -0.314 6.314 13 C 0.059 3.941 14 C -0.107 4.107 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.340 0.660 32 H 0.344 0.656 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 23.713 0.271 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.128 4.128 3 C -0.099 4.099 4 C -0.135 4.135 5 C 0.025 3.975 6 H 0.056 0.944 7 C -0.199 4.199 8 N -0.375 5.375 9 C -0.075 4.075 10 C -0.229 4.229 11 C 0.094 3.906 12 O -0.227 6.227 13 C -0.016 4.016 14 C -0.145 4.145 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.139 0.861 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.785 22.949 -0.234 23.019 hybrid contribution -0.656 -0.239 0.546 0.887 sum 1.129 22.709 0.312 22.739 Atomic orbital electron populations 1.20568 0.90683 1.02548 1.02121 1.19190 0.96390 0.90325 1.06899 1.20635 0.93216 0.96597 0.99440 1.19549 0.92973 0.94582 1.06431 1.20077 0.90276 0.93212 0.93908 0.94384 1.21822 1.01457 1.01475 0.95159 1.58715 1.25027 1.38848 1.14955 1.20770 1.00142 0.90644 0.95901 1.21403 0.93199 0.99698 1.08649 1.18983 0.90494 0.86286 0.94828 1.86100 1.36657 1.12460 1.87486 1.23199 0.95285 0.82251 1.00831 1.21712 0.98443 0.92471 1.01888 1.19040 0.95090 0.89570 0.97513 1.21150 0.93091 0.90766 1.51004 0.92514 1.25023 0.95078 0.99146 0.95186 1.69954 1.10574 1.22364 1.50573 0.86609 0.80619 0.81813 0.78689 1.20169 1.21250 1.20178 0.91632 0.90953 0.92184 0.86119 0.91632 0.92114 0.92869 0.84742 0.84328 0.85234 0.85190 0.92388 0.92408 0.92253 0.92240 0.96324 0.96332 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.79 36.00 0.35 -0.87 16 2 C -0.13 -1.74 5.89 -104.47 -0.62 -2.35 16 3 C -0.08 -0.94 9.32 -39.60 -0.37 -1.30 16 4 C -0.13 -1.54 4.88 -104.60 -0.51 -2.05 16 5 C 0.14 1.20 3.57 -68.86 -0.25 0.96 16 6 H 0.04 0.31 8.00 -51.93 -0.42 -0.11 16 7 C -0.14 -1.17 9.46 37.16 0.35 -0.82 16 8 N -0.84 -6.71 8.50 -5.65 -0.05 -6.76 16 9 C -0.06 -0.72 9.32 -39.61 -0.37 -1.09 16 10 C -0.21 -3.07 9.04 -39.43 -0.36 -3.43 16 11 C 0.14 2.21 6.66 -39.21 -0.26 1.94 16 12 O -0.31 -5.51 9.18 -19.41 -0.18 -5.68 16 13 C 0.06 1.06 4.74 37.16 0.18 1.24 16 14 C -0.11 -2.27 5.52 -26.73 -0.15 -2.41 16 15 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 16 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.95 7.53 -51.93 -0.39 0.56 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.12 1.12 8.03 -52.49 -0.42 0.69 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.34 2.03 9.04 -39.29 -0.36 1.68 16 32 H 0.34 2.63 8.99 -39.29 -0.35 2.27 16 33 H 0.13 1.56 7.72 -52.49 -0.41 1.15 16 34 H 0.13 1.87 6.30 -52.49 -0.33 1.53 16 35 H 0.06 1.01 7.66 -51.93 -0.40 0.62 16 36 H 0.06 1.01 7.66 -51.93 -0.40 0.61 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -30.38 339.76 -8.75 -39.13 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.81 Total: 0.91 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -2.54 Total: -23.26 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.69 Total: -32.87 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.18 Total: -5.68 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.38 -8.75 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122642509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.043 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds