Wall clock time and date at job start Mon Mar 30 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46891 * 111.00026 * 2 1 4 4 H 1.09003 * 109.47534 * 325.00285 * 3 2 1 5 5 C 1.53003 * 109.47389 * 85.00200 * 3 2 1 6 6 C 1.50706 * 109.47130 * 205.00358 * 3 2 1 7 7 C 1.38289 * 119.93791 * 320.25073 * 6 3 2 8 8 C 1.38125 * 120.05202 * 180.25765 * 7 6 3 9 9 C 1.38755 * 119.93999 * 359.48967 * 8 7 6 10 10 O 1.35906 * 120.05296 * 180.27973 * 9 8 7 11 11 C 1.42901 * 117.00155 * 359.97438 * 10 9 8 12 12 C 1.52991 * 109.47372 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47416 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99478 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00250 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00002 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99778 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47046 * 90.00178 * 17 15 13 19 19 H 1.48499 * 109.46744 * 209.99422 * 17 15 13 20 20 H 1.48496 * 109.47279 * 330.00173 * 17 15 13 21 21 C 1.38709 * 119.89505 * 0.25905 * 9 8 7 22 22 C 1.50693 * 120.03025 * 180.02562 * 21 9 8 23 23 C 1.38167 * 119.93745 * 359.97438 * 21 9 8 24 24 H 1.09004 * 109.47025 * 299.99922 * 1 2 3 25 25 H 1.09001 * 109.47249 * 59.99565 * 1 2 3 26 26 H 1.09002 * 109.47431 * 180.02562 * 1 2 3 27 27 H 1.00905 * 110.99813 * 123.95483 * 2 1 3 28 28 H 1.08994 * 109.46896 * 59.99575 * 5 3 2 29 29 H 1.08996 * 109.47139 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.46694 * 299.99953 * 5 3 2 31 31 H 1.07995 * 119.98087 * 0.02562 * 7 6 3 32 32 H 1.08002 * 120.03152 * 179.77429 * 8 7 6 33 33 H 1.09003 * 109.47208 * 300.00726 * 11 10 9 34 34 H 1.09006 * 109.47043 * 60.00389 * 11 10 9 35 35 H 1.09003 * 109.47447 * 300.00457 * 12 11 10 36 36 H 1.09003 * 109.47081 * 60.00580 * 12 11 10 37 37 H 0.96995 * 119.99660 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47146 * 89.99918 * 22 21 9 39 39 H 1.09006 * 109.47104 * 209.99762 * 22 21 9 40 40 H 1.08997 * 109.47215 * 329.99873 * 22 21 9 41 41 H 1.08006 * 119.96869 * 180.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 1 1.3397 2.0123 -0.5894 5 6 2.0609 1.8926 1.4370 6 6 3.3776 1.3789 -0.6006 7 6 4.2615 0.3555 -0.3109 8 6 5.5307 0.3628 -0.8558 9 6 5.9148 1.3925 -1.7028 10 8 7.1611 1.3990 -2.2447 11 6 8.0247 0.3142 -1.8988 12 6 9.3735 0.4930 -2.5983 13 6 10.2840 -0.6513 -2.2340 14 1 9.9352 -1.4286 -1.5703 15 6 11.5618 -0.7065 -2.7489 16 7 12.3561 -1.7054 -2.4313 17 14 12.1648 0.6377 -3.8974 18 1 12.7988 1.7202 -3.1028 19 1 13.1592 0.0709 -4.8435 20 1 11.0159 1.1904 -4.6588 21 6 5.0246 2.4151 -1.9959 22 6 5.4384 3.5347 -2.9158 23 6 3.7578 2.4057 -1.4444 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8306 -0.5262 0.7814 28 1 2.7165 1.2517 2.0264 29 1 2.4511 2.9103 1.4369 30 1 1.0612 1.8872 1.8713 31 1 3.9606 -0.4481 0.3447 32 1 6.2220 -0.4347 -0.6265 33 1 8.1747 0.2992 -0.8193 34 1 7.5724 -0.6255 -2.2159 35 1 9.2238 0.5083 -3.6779 36 1 9.8257 1.4327 -2.2809 37 1 13.2552 -1.7439 -2.7932 38 1 5.1903 3.2707 -3.9439 39 1 4.9110 4.4472 -2.6376 40 1 6.5130 3.6960 -2.8314 41 1 3.0641 3.2014 -1.6726 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122895077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:33 Heat of formation + Delta-G solvation = -30.303307 kcal Electronic energy + Delta-G solvation = -19300.720731 eV Core-core repulsion = 16373.159053 eV Total energy + Delta-G solvation = -2927.561678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04960 -38.12607 -36.22498 -33.35729 -32.56371 -31.33674 -30.58906 -28.64840 -26.67022 -25.58534 -24.96012 -22.91470 -22.18438 -20.32821 -19.91225 -17.82077 -16.69145 -16.17587 -15.91587 -15.44185 -14.96799 -14.63772 -14.34919 -13.99283 -13.68588 -13.47126 -13.13894 -13.04198 -12.81018 -12.62263 -12.46470 -12.29036 -12.23179 -11.98867 -11.60441 -11.41820 -11.24054 -10.90424 -10.74471 -10.54724 -10.16329 -9.94470 -9.78489 -9.33253 -8.71164 -8.61865 -8.57831 -7.67249 -6.12910 -4.13681 1.54496 1.65709 3.28945 3.36204 3.41817 3.80643 3.84515 4.10308 4.39661 4.65280 4.84102 4.99829 5.04628 5.11210 5.14134 5.18468 5.21307 5.40933 5.44730 5.51843 5.59501 5.60962 5.77972 5.83063 5.86210 5.92157 5.95298 6.01148 6.05703 6.38955 6.42403 6.54379 6.62746 6.71451 6.90684 6.96583 7.09844 7.15549 7.24735 7.63777 7.96597 8.39721 8.88044 9.47499 10.99717 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033770 B = 0.003608 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.927120 B = 7757.673454 C = 8323.407117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.687 5.687 3 C 0.131 3.869 4 H 0.082 0.918 5 C -0.178 4.178 6 C -0.119 4.119 7 C -0.063 4.063 8 C -0.207 4.207 9 C 0.141 3.859 10 O -0.318 6.318 11 C 0.073 3.927 12 C -0.008 4.008 13 C -0.526 4.526 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.881 3.119 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.127 4.127 22 C -0.102 4.102 23 C -0.081 4.081 24 H 0.020 0.980 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.341 0.659 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.023 0.977 37 H 0.266 0.734 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.342 8.022 5.159 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.317 5.317 3 C 0.021 3.979 4 H 0.100 0.900 5 C -0.237 4.237 6 C -0.120 4.120 7 C -0.082 4.082 8 C -0.226 4.226 9 C 0.094 3.906 10 O -0.231 6.231 11 C -0.001 4.001 12 C -0.046 4.046 13 C -0.564 4.564 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.707 3.293 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.127 4.127 22 C -0.159 4.159 23 C -0.099 4.099 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.015 7.995 4.307 23.815 hybrid contribution 0.276 0.518 0.553 0.806 sum -21.739 8.513 4.860 23.847 Atomic orbital electron populations 1.22216 0.87885 1.01847 1.00233 1.60513 1.07487 1.13591 1.50090 1.20348 0.93193 0.89467 0.94908 0.90024 1.22487 1.01454 1.02619 0.97091 1.19431 0.95208 0.96413 1.00937 1.20564 0.92137 0.97082 0.98370 1.21353 0.98438 1.00460 1.02365 1.18971 0.85462 0.93741 0.92382 1.86098 1.20977 1.48910 1.67110 1.23055 0.90487 0.86844 0.99756 1.19574 0.90075 0.98300 0.96613 1.20852 0.97297 1.07859 1.30412 0.90764 1.24934 0.96411 0.95701 0.95976 1.69894 1.08068 1.31015 1.44672 0.86755 0.78995 0.82231 0.81274 1.20076 1.21194 1.18724 1.19180 0.93411 0.97254 1.02891 1.20563 1.02435 0.95061 0.97830 1.20560 0.94741 0.98064 0.96561 0.96118 0.91728 0.91463 0.84028 0.92141 0.91648 0.92824 0.86462 0.85194 0.92653 0.92560 0.95443 0.95904 0.92459 0.91703 0.92256 0.90996 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.50 60.07 0.63 0.83 16 2 N -0.69 -6.35 6.05 -115.24 -0.70 -7.05 16 3 C 0.13 1.25 2.79 -68.86 -0.19 1.06 16 4 H 0.08 0.75 7.66 -51.93 -0.40 0.35 16 5 C -0.18 -1.46 9.14 37.16 0.34 -1.12 16 6 C -0.12 -1.47 4.96 -104.60 -0.52 -1.99 16 7 C -0.06 -0.85 9.32 -39.60 -0.37 -1.22 16 8 C -0.21 -3.29 9.04 -39.43 -0.36 -3.65 16 9 C 0.14 2.44 6.66 -39.22 -0.26 2.18 16 10 O -0.32 -6.28 9.18 -19.44 -0.18 -6.45 16 11 C 0.07 1.52 4.68 37.15 0.17 1.69 16 12 C -0.01 -0.20 4.41 -27.88 -0.12 -0.32 16 13 C -0.53 -14.92 9.66 -34.44 -0.33 -15.26 16 14 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 17 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 21 C -0.13 -1.90 5.89 -104.48 -0.62 -2.51 16 22 C -0.10 -1.35 9.79 36.00 0.35 -0.99 16 23 C -0.08 -1.03 9.32 -39.61 -0.37 -1.40 16 24 H 0.02 0.13 7.44 -51.93 -0.39 -0.25 16 25 H 0.06 0.47 8.06 -51.93 -0.42 0.06 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.34 2.82 7.90 -39.29 -0.31 2.51 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.38 7.45 -51.93 -0.39 -0.01 16 31 H 0.12 1.36 7.23 -52.49 -0.38 0.98 16 32 H 0.13 2.05 6.30 -52.49 -0.33 1.72 16 33 H 0.06 1.12 7.66 -51.93 -0.40 0.72 16 34 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 35 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 36 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.07 1.04 7.53 -51.93 -0.39 0.65 16 41 H 0.12 1.23 8.03 -52.48 -0.42 0.80 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -30.76 333.67 -8.16 -38.92 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.68 Total: -0.08 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.74 Total: -20.71 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.08 Total: -33.70 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.18 Total: -6.45 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.76 -8.16 -38.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122895077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.621 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds