Wall clock time and date at job start Mon Mar 30 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46891 * 111.00026 * 2 1 4 4 H 1.09003 * 109.47534 * 325.00285 * 3 2 1 5 5 C 1.53003 * 109.47389 * 85.00200 * 3 2 1 6 6 C 1.50706 * 109.47130 * 205.00358 * 3 2 1 7 7 C 1.38289 * 119.93791 * 320.25073 * 6 3 2 8 8 C 1.38125 * 120.05202 * 180.25765 * 7 6 3 9 9 C 1.38755 * 119.93999 * 359.48967 * 8 7 6 10 10 O 1.35906 * 120.05296 * 180.27973 * 9 8 7 11 11 C 1.42901 * 117.00155 * 359.97438 * 10 9 8 12 12 C 1.52991 * 109.47372 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47416 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99478 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00250 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00002 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99778 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47046 * 90.00178 * 17 15 13 19 19 H 1.48499 * 109.46744 * 209.99422 * 17 15 13 20 20 H 1.48496 * 109.47279 * 330.00173 * 17 15 13 21 21 C 1.38709 * 119.89505 * 0.25905 * 9 8 7 22 22 C 1.50693 * 120.03025 * 180.02562 * 21 9 8 23 23 C 1.38167 * 119.93745 * 359.97438 * 21 9 8 24 24 H 1.09004 * 109.47025 * 299.99922 * 1 2 3 25 25 H 1.09001 * 109.47249 * 59.99565 * 1 2 3 26 26 H 1.09002 * 109.47431 * 180.02562 * 1 2 3 27 27 H 1.00905 * 110.99813 * 123.95483 * 2 1 3 28 28 H 1.08994 * 109.46896 * 59.99575 * 5 3 2 29 29 H 1.08996 * 109.47139 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.46694 * 299.99953 * 5 3 2 31 31 H 1.07995 * 119.98087 * 0.02562 * 7 6 3 32 32 H 1.08002 * 120.03152 * 179.77429 * 8 7 6 33 33 H 1.09003 * 109.47208 * 300.00726 * 11 10 9 34 34 H 1.09006 * 109.47043 * 60.00389 * 11 10 9 35 35 H 1.09003 * 109.47447 * 300.00457 * 12 11 10 36 36 H 1.09003 * 109.47081 * 60.00580 * 12 11 10 37 37 H 0.96995 * 119.99660 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47146 * 89.99918 * 22 21 9 39 39 H 1.09006 * 109.47104 * 209.99762 * 22 21 9 40 40 H 1.08997 * 109.47215 * 329.99873 * 22 21 9 41 41 H 1.08006 * 119.96869 * 180.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 1 1.3397 2.0123 -0.5894 5 6 2.0609 1.8926 1.4370 6 6 3.3776 1.3789 -0.6006 7 6 4.2615 0.3555 -0.3109 8 6 5.5307 0.3628 -0.8558 9 6 5.9148 1.3925 -1.7028 10 8 7.1611 1.3990 -2.2447 11 6 8.0247 0.3142 -1.8988 12 6 9.3735 0.4930 -2.5983 13 6 10.2840 -0.6513 -2.2340 14 1 9.9352 -1.4286 -1.5703 15 6 11.5618 -0.7065 -2.7489 16 7 12.3561 -1.7054 -2.4313 17 14 12.1648 0.6377 -3.8974 18 1 12.7988 1.7202 -3.1028 19 1 13.1592 0.0709 -4.8435 20 1 11.0159 1.1904 -4.6588 21 6 5.0246 2.4151 -1.9959 22 6 5.4384 3.5347 -2.9158 23 6 3.7578 2.4057 -1.4444 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8306 -0.5262 0.7814 28 1 2.7165 1.2517 2.0264 29 1 2.4511 2.9103 1.4369 30 1 1.0612 1.8872 1.8713 31 1 3.9606 -0.4481 0.3447 32 1 6.2220 -0.4347 -0.6265 33 1 8.1747 0.2992 -0.8193 34 1 7.5724 -0.6255 -2.2159 35 1 9.2238 0.5083 -3.6779 36 1 9.8257 1.4327 -2.2809 37 1 13.2552 -1.7439 -2.7932 38 1 5.1903 3.2707 -3.9439 39 1 4.9110 4.4472 -2.6376 40 1 6.5130 3.6960 -2.8314 41 1 3.0641 3.2014 -1.6726 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122895077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:33 Heat of formation + Delta-G solvation = -49.125211 kcal Electronic energy + Delta-G solvation = -19301.536911 eV Core-core repulsion = 16373.159053 eV Total energy + Delta-G solvation = -2928.377857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24232 -39.24921 -37.21507 -35.39384 -33.70328 -32.73247 -32.00980 -29.59095 -27.77192 -27.14325 -25.89401 -23.79418 -23.70074 -21.95166 -20.90744 -19.43620 -18.43315 -17.25288 -17.02209 -16.93401 -16.30182 -15.73505 -15.57037 -15.13091 -14.97231 -14.77359 -14.47750 -13.97711 -13.90909 -13.83226 -13.75047 -13.23571 -13.19869 -13.10818 -12.86403 -12.75335 -12.38313 -12.22919 -12.16624 -11.89585 -11.75758 -11.68751 -11.48012 -11.38345 -10.82633 -9.71111 -9.34135 -8.87024 -8.36106 -6.43089 0.43942 0.52172 1.35331 1.36878 1.49895 2.32487 2.37515 2.78981 2.98881 3.35776 3.84780 3.89789 3.96259 4.17068 4.20878 4.26345 4.30593 4.43037 4.50498 4.58142 4.63990 4.64911 4.68849 4.70811 4.85876 4.88856 4.94476 5.02625 5.08665 5.10687 5.23696 5.29070 5.36281 5.44371 5.53020 5.55760 5.65978 5.96255 6.14442 6.15840 6.47108 6.55315 6.62514 7.22210 8.79830 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033770 B = 0.003608 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.927120 B = 7757.673454 C = 8323.407117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.703 5.703 3 C 0.134 3.866 4 H 0.093 0.907 5 C -0.173 4.173 6 C -0.109 4.109 7 C -0.068 4.068 8 C -0.221 4.221 9 C 0.100 3.900 10 O -0.331 6.331 11 C 0.088 3.912 12 C -0.004 4.004 13 C -0.538 4.538 14 H 0.040 0.960 15 C 0.014 3.986 16 N -0.943 5.943 17 Si 0.950 3.050 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.250 1.250 21 C -0.133 4.133 22 C -0.101 4.101 23 C -0.079 4.079 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.346 0.654 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.270 0.730 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.690 10.045 4.952 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.333 5.333 3 C 0.024 3.976 4 H 0.111 0.889 5 C -0.231 4.231 6 C -0.110 4.110 7 C -0.087 4.087 8 C -0.240 4.240 9 C 0.055 3.945 10 O -0.245 6.245 11 C 0.013 3.987 12 C -0.041 4.041 13 C -0.576 4.576 14 H 0.058 0.942 15 C -0.185 4.185 16 N -0.583 5.583 17 Si 0.773 3.227 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.174 1.174 21 C -0.134 4.134 22 C -0.158 4.158 23 C -0.097 4.097 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.164 0.836 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.396 10.020 4.113 26.692 hybrid contribution 0.840 -0.169 0.711 1.114 sum -23.556 9.851 4.824 25.984 Atomic orbital electron populations 1.22240 0.86577 1.02468 1.00763 1.60474 1.08808 1.13412 1.50642 1.20349 0.91465 0.90112 0.95681 0.88910 1.22428 1.02333 1.02348 0.96019 1.19863 0.96323 0.95252 0.99551 1.20782 0.91352 0.98124 0.98395 1.21415 0.99499 1.00161 1.02932 1.19321 0.85020 0.95720 0.94424 1.86013 1.22248 1.48148 1.68090 1.22616 0.89528 0.87386 0.99134 1.19419 0.91233 0.96690 0.96781 1.21119 0.98354 1.08321 1.29798 0.94161 1.25891 0.96541 0.98266 0.97760 1.70027 1.08736 1.33226 1.46278 0.85661 0.78823 0.79102 0.79145 1.18855 1.20395 1.17386 1.19524 0.93812 0.96952 1.03076 1.20595 1.01584 0.95763 0.97824 1.20940 0.94240 0.98871 0.95687 0.94924 0.91758 0.90901 0.83575 0.92603 0.91639 0.91272 0.84827 0.86289 0.92765 0.92894 0.95455 0.95479 0.92056 0.91230 0.89330 0.92889 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.50 127.69 1.34 1.68 16 2 N -0.70 -11.17 6.05 -518.52 -3.14 -14.31 16 3 C 0.13 2.15 2.79 44.17 0.12 2.27 16 4 H 0.09 1.33 7.66 -2.39 -0.02 1.31 16 5 C -0.17 -2.30 9.14 71.98 0.66 -1.64 16 6 C -0.11 -2.44 4.96 -19.85 -0.10 -2.54 16 7 C -0.07 -1.77 9.32 22.25 0.21 -1.57 16 8 C -0.22 -7.13 9.04 22.37 0.20 -6.93 16 9 C 0.10 3.50 6.66 22.51 0.15 3.65 16 10 O -0.33 -13.31 9.18 -92.49 -0.85 -14.16 16 11 C 0.09 3.80 4.68 71.98 0.34 4.14 16 12 C 0.00 -0.19 4.41 29.85 0.13 -0.05 16 13 C -0.54 -31.45 9.66 25.60 0.25 -31.20 16 14 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 15 C 0.01 0.80 5.47 84.65 0.46 1.26 16 16 N -0.94 -58.93 13.96 21.45 0.30 -58.63 16 17 Si 0.95 44.64 27.47 68.60 1.88 46.52 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 21 C -0.13 -3.81 5.89 -19.77 -0.12 -3.93 16 22 C -0.10 -2.49 9.79 71.23 0.70 -1.80 16 23 C -0.08 -1.81 9.32 22.25 0.21 -1.60 16 24 H 0.03 0.31 7.44 -2.39 -0.02 0.29 16 25 H 0.06 0.76 8.06 -2.39 -0.02 0.74 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.35 4.92 7.90 -89.69 -0.71 4.21 16 28 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.73 7.45 -2.39 -0.02 0.71 16 31 H 0.13 2.94 7.23 -2.91 -0.02 2.91 16 32 H 0.12 3.97 6.30 -2.91 -0.02 3.95 16 33 H 0.05 2.30 7.66 -2.39 -0.02 2.28 16 34 H 0.05 2.27 7.66 -2.38 -0.02 2.25 16 35 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 36 H 0.03 1.30 7.57 -2.39 -0.02 1.29 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 1.62 8.09 -2.38 -0.02 1.60 16 40 H 0.05 1.50 7.53 -2.39 -0.02 1.48 16 41 H 0.15 2.46 8.03 -2.91 -0.02 2.44 16 Total: -1.00 -67.25 333.67 2.99 -64.26 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.24 Total: 14.59 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 4.55 Total: -38.27 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -2.84 Total: -72.94 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.85 Total: -14.16 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -67.25 2.99 -64.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122895077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.134 kcal (2) G-P(sol) polarization free energy of solvation -67.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds