Wall clock time and date at job start Mon Mar 30 2020 07:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 C 1.53001 * 109.46684 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46864 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46864 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.46938 * 179.97438 * 6 5 4 8 8 C 1.35958 * 117.00279 * 179.97438 * 7 6 5 9 9 C 1.39414 * 119.81591 * 0.02562 * 8 7 6 10 10 C 1.38106 * 120.56849 * 180.02562 * 9 8 7 11 11 C 1.38717 * 120.19935 * 0.25152 * 10 9 8 12 12 N 1.38852 * 120.17734 * 179.72241 * 11 10 9 13 13 C 1.41547 * 119.63425 * 359.46227 * 11 10 9 14 14 C 1.41027 * 120.27342 * 180.27210 * 13 11 10 15 15 H 1.08006 * 120.00018 * 25.81188 * 14 13 11 16 16 C 1.39898 * 120.00065 * 205.81505 * 14 13 11 17 17 N 1.30896 * 119.99814 * 15.34662 * 16 14 13 18 18 Si 1.86803 * 120.00335 * 195.34556 * 16 14 13 19 19 H 1.48498 * 109.47142 * 89.99636 * 18 16 14 20 20 H 1.48502 * 109.47300 * 209.99903 * 18 16 14 21 21 H 1.48498 * 109.46978 * 329.99927 * 18 16 14 22 22 C 1.37836 * 119.82165 * 180.02562 * 8 7 6 23 23 H 1.09001 * 109.46411 * 300.00013 * 1 2 3 24 24 H 1.08996 * 109.46866 * 59.99758 * 1 2 3 25 25 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46893 * 239.99397 * 2 1 3 27 27 H 1.09004 * 109.46792 * 119.99926 * 2 1 3 28 28 H 1.08994 * 109.47153 * 60.00184 * 3 2 1 29 29 H 1.09003 * 109.46862 * 299.99887 * 3 2 1 30 30 H 1.08994 * 109.47443 * 60.00034 * 4 3 2 31 31 H 1.09003 * 109.47111 * 299.99407 * 4 3 2 32 32 H 1.08999 * 109.47174 * 59.99420 * 5 4 3 33 33 H 1.09003 * 109.46824 * 299.99646 * 5 4 3 34 34 H 1.08994 * 109.47443 * 60.00098 * 6 5 4 35 35 H 1.09003 * 109.47111 * 299.99470 * 6 5 4 36 36 H 1.07998 * 119.71934 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.89523 * 179.97438 * 10 9 8 38 38 H 0.96998 * 120.00080 * 0.02562 * 12 11 10 39 39 H 0.97000 * 119.99349 * 180.02562 * 12 11 10 40 40 H 0.97004 * 119.99744 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.10811 * 359.95877 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8850 -0.0013 6 6 5.6101 2.8849 -0.0026 7 8 6.0865 4.2322 -0.0038 8 6 7.4343 4.4104 -0.0045 9 6 8.2801 3.3021 -0.0046 10 6 9.6515 3.4651 -0.0047 11 6 10.2029 4.7379 0.0004 12 7 11.5817 4.9013 0.0061 13 6 9.3522 5.8692 -0.0057 14 6 9.8983 7.1695 -0.0063 15 1 10.8854 7.3404 -0.4099 16 6 9.1614 8.2379 0.5158 17 7 8.1148 8.0060 1.2669 18 14 9.6712 9.9956 0.1411 19 1 8.9910 10.4552 -1.0963 20 1 9.2854 10.8750 1.2739 21 1 11.1424 10.0538 -0.0520 22 6 7.9572 5.6857 -0.0051 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9288 -0.8908 31 1 3.9338 0.9285 0.8892 32 1 3.7171 3.3991 0.8886 33 1 3.7164 3.3985 -0.8913 34 1 5.9727 2.3710 -0.8927 35 1 5.9742 2.3713 0.8872 36 1 7.8592 2.3075 -0.0045 37 1 10.2965 2.5989 -0.0044 38 1 12.1622 4.1241 0.0060 39 1 11.9644 5.7926 0.0100 40 1 7.6037 8.7469 1.6286 41 1 7.2982 6.5414 -0.0057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127605155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:30 Heat of formation + Delta-G solvation = -53.817255 kcal Electronic energy + Delta-G solvation = -19011.152545 eV Core-core repulsion = 16082.571226 eV Total energy + Delta-G solvation = -2928.581319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.70009 -36.99755 -36.13256 -33.54121 -33.06231 -32.02699 -29.54055 -28.46175 -26.57983 -25.01354 -23.83558 -21.60060 -21.13148 -20.59178 -19.94246 -17.57524 -16.13854 -16.07589 -15.73128 -15.39557 -15.11926 -14.67825 -14.32378 -13.68455 -13.64285 -13.26930 -12.97040 -12.48792 -12.27122 -12.14555 -11.88378 -11.70354 -11.39371 -11.29527 -11.15535 -11.05426 -10.97300 -10.86620 -10.61760 -10.60544 -10.36800 -10.16664 -9.90962 -9.34362 -9.10098 -8.53981 -7.35344 -6.66193 -5.95004 -4.14267 2.84186 3.12732 3.14802 3.22699 3.31434 4.00299 4.15076 4.72994 4.77788 4.81905 4.92351 5.10293 5.29714 5.32170 5.43997 5.44359 5.61756 5.72940 5.73208 5.76628 5.79987 5.92045 5.92921 5.99802 6.08886 6.16823 6.24726 6.38962 6.41988 6.45564 6.96059 7.05677 7.25755 7.56000 7.61805 7.72579 8.02892 8.12077 8.38005 8.75550 8.87316 8.93010 9.15827 9.21935 10.32836 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025631 B = 0.003548 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.163413 B = 7889.733958 C = 8877.880058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.119 4.119 6 C 0.068 3.932 7 O -0.328 6.328 8 C 0.093 3.907 9 C -0.274 4.274 10 C -0.156 4.156 11 C 0.096 3.904 12 N -0.886 5.886 13 C 0.091 3.909 14 C -0.462 4.462 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.794 5.794 18 Si 0.907 3.093 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.169 4.169 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.376 0.624 39 H 0.390 0.610 40 H 0.278 0.722 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.027 -9.576 -1.670 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.008 4.008 7 O -0.243 6.243 8 C 0.048 3.952 9 C -0.294 4.294 10 C -0.180 4.180 11 C -0.005 4.005 12 N -0.429 5.429 13 C 0.086 3.914 14 C -0.492 4.492 15 H 0.092 0.908 16 C -0.143 4.143 17 N -0.420 5.420 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.191 4.191 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.201 0.799 39 H 0.219 0.781 40 H 0.089 0.911 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.450 -9.294 -1.519 12.653 hybrid contribution 0.684 0.533 -0.022 0.867 sum -7.766 -8.762 -1.541 11.809 Atomic orbital electron populations 1.21783 0.96076 1.01373 1.01812 1.21548 0.95681 0.97146 1.01961 1.21608 0.95293 0.96532 1.02258 1.21504 0.95325 0.96348 1.02204 1.21530 0.94083 0.96757 1.03243 1.22449 0.93775 0.84319 1.00298 1.85969 1.21486 1.26447 1.90414 1.18744 0.80001 0.94560 1.01867 1.20164 0.93505 0.95521 1.20258 1.19711 0.93993 0.93929 1.10396 1.17906 0.83897 0.93199 1.05476 1.41830 1.03549 1.08788 1.88686 1.16986 0.90203 0.91315 0.92900 1.19140 1.02414 0.91563 1.36107 0.90750 1.25814 0.94353 1.01213 0.92891 1.69866 1.15159 1.33848 1.23130 0.86348 0.79842 0.81828 0.78811 1.19454 1.20479 1.18899 1.20360 0.94806 0.93151 1.10745 0.92779 0.92786 0.92976 0.92101 0.92087 0.91890 0.91923 0.91889 0.91858 0.91199 0.91280 0.93360 0.93309 0.89025 0.89399 0.79911 0.78126 0.91082 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 4 C -0.12 -1.27 5.21 -26.73 -0.14 -1.41 16 5 C -0.12 -1.66 5.58 -26.73 -0.15 -1.80 16 6 C 0.07 1.19 4.73 37.16 0.18 1.36 16 7 O -0.33 -7.54 10.13 -19.61 -0.20 -7.74 16 8 C 0.09 2.34 6.67 -39.29 -0.26 2.08 16 9 C -0.27 -6.43 9.03 -39.19 -0.35 -6.78 16 10 C -0.16 -3.63 9.87 -39.45 -0.39 -4.02 16 11 C 0.10 2.34 6.79 -83.24 -0.57 1.78 16 12 N -0.89 -18.02 8.98 32.74 0.29 -17.73 16 13 C 0.09 2.46 5.58 -106.65 -0.60 1.86 16 14 C -0.46 -12.17 8.49 -37.90 -0.32 -12.50 16 15 H 0.07 1.84 6.69 -52.48 -0.35 1.49 16 16 C 0.07 1.89 5.18 -17.33 -0.09 1.80 16 17 N -0.79 -21.22 10.88 55.55 0.60 -20.62 16 18 Si 0.91 18.99 29.59 -169.99 -5.03 13.96 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 C -0.17 -4.67 8.60 -38.80 -0.33 -5.00 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.81 7.65 -51.93 -0.40 0.42 16 35 H 0.05 0.84 7.65 -51.93 -0.40 0.44 16 36 H 0.09 1.91 6.26 -52.49 -0.33 1.58 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.38 6.41 8.83 -40.82 -0.36 6.05 16 39 H 0.39 7.74 7.05 -40.82 -0.29 7.46 16 40 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 41 H 0.13 3.69 6.14 -52.49 -0.32 3.37 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -29.04 333.89 -8.90 -37.95 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -6.65 Total: 15.05 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -2.95 Total: -25.91 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.90 Total: -38.34 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.20 Total: -7.74 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.04 -8.90 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127605155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.869 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds