Wall clock time and date at job start Mon Mar 30 2020 07:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 C 1.53001 * 109.46684 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46864 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46864 * 180.02562 * 5 4 3 7 7 O 1.42902 * 109.46938 * 179.97438 * 6 5 4 8 8 C 1.35958 * 117.00279 * 179.97438 * 7 6 5 9 9 C 1.39414 * 119.81591 * 0.02562 * 8 7 6 10 10 C 1.38106 * 120.56849 * 180.02562 * 9 8 7 11 11 C 1.38717 * 120.19935 * 0.25152 * 10 9 8 12 12 N 1.38852 * 120.17734 * 179.72241 * 11 10 9 13 13 C 1.41547 * 119.63425 * 359.46227 * 11 10 9 14 14 C 1.41027 * 120.27342 * 180.27210 * 13 11 10 15 15 H 1.08006 * 120.00018 * 25.81188 * 14 13 11 16 16 C 1.39898 * 120.00065 * 205.81505 * 14 13 11 17 17 N 1.30896 * 119.99814 * 15.34662 * 16 14 13 18 18 Si 1.86803 * 120.00335 * 195.34556 * 16 14 13 19 19 H 1.48498 * 109.47142 * 89.99636 * 18 16 14 20 20 H 1.48502 * 109.47300 * 209.99903 * 18 16 14 21 21 H 1.48498 * 109.46978 * 329.99927 * 18 16 14 22 22 C 1.37836 * 119.82165 * 180.02562 * 8 7 6 23 23 H 1.09001 * 109.46411 * 300.00013 * 1 2 3 24 24 H 1.08996 * 109.46866 * 59.99758 * 1 2 3 25 25 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46893 * 239.99397 * 2 1 3 27 27 H 1.09004 * 109.46792 * 119.99926 * 2 1 3 28 28 H 1.08994 * 109.47153 * 60.00184 * 3 2 1 29 29 H 1.09003 * 109.46862 * 299.99887 * 3 2 1 30 30 H 1.08994 * 109.47443 * 60.00034 * 4 3 2 31 31 H 1.09003 * 109.47111 * 299.99407 * 4 3 2 32 32 H 1.08999 * 109.47174 * 59.99420 * 5 4 3 33 33 H 1.09003 * 109.46824 * 299.99646 * 5 4 3 34 34 H 1.08994 * 109.47443 * 60.00098 * 6 5 4 35 35 H 1.09003 * 109.47111 * 299.99470 * 6 5 4 36 36 H 1.07998 * 119.71934 * 0.02562 * 9 8 7 37 37 H 1.07997 * 119.89523 * 179.97438 * 10 9 8 38 38 H 0.96998 * 120.00080 * 0.02562 * 12 11 10 39 39 H 0.97000 * 119.99349 * 180.02562 * 12 11 10 40 40 H 0.97004 * 119.99744 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.10811 * 359.95877 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8850 -0.0013 6 6 5.6101 2.8849 -0.0026 7 8 6.0865 4.2322 -0.0038 8 6 7.4343 4.4104 -0.0045 9 6 8.2801 3.3021 -0.0046 10 6 9.6515 3.4651 -0.0047 11 6 10.2029 4.7379 0.0004 12 7 11.5817 4.9013 0.0061 13 6 9.3522 5.8692 -0.0057 14 6 9.8983 7.1695 -0.0063 15 1 10.8854 7.3404 -0.4099 16 6 9.1614 8.2379 0.5158 17 7 8.1148 8.0060 1.2669 18 14 9.6712 9.9956 0.1411 19 1 8.9910 10.4552 -1.0963 20 1 9.2854 10.8750 1.2739 21 1 11.1424 10.0538 -0.0520 22 6 7.9572 5.6857 -0.0051 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9288 -0.8908 31 1 3.9338 0.9285 0.8892 32 1 3.7171 3.3991 0.8886 33 1 3.7164 3.3985 -0.8913 34 1 5.9727 2.3710 -0.8927 35 1 5.9742 2.3713 0.8872 36 1 7.8592 2.3075 -0.0045 37 1 10.2965 2.5989 -0.0044 38 1 12.1622 4.1241 0.0060 39 1 11.9644 5.7926 0.0100 40 1 7.6037 8.7469 1.6286 41 1 7.2982 6.5414 -0.0057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127605155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:29 Heat of formation + Delta-G solvation = -69.604406 kcal Electronic energy + Delta-G solvation = -19011.837127 eV Core-core repulsion = 16082.571226 eV Total energy + Delta-G solvation = -2929.265902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47264 -38.64915 -37.13394 -35.44324 -34.38345 -33.43672 -31.45588 -29.66784 -28.19866 -26.90598 -24.96589 -23.18770 -22.08654 -21.88566 -21.62509 -19.41046 -17.93119 -17.49366 -17.23397 -17.18595 -16.43623 -16.20899 -15.69902 -14.89594 -14.74742 -14.58649 -14.31563 -14.07965 -13.73290 -13.65999 -13.21887 -13.12460 -12.94516 -12.77477 -12.73445 -12.35560 -12.14342 -12.01616 -11.90054 -11.76362 -11.55054 -11.43470 -11.34705 -11.18567 -10.99489 -10.28835 -9.32235 -8.56791 -7.79823 -6.10879 0.99411 1.34065 1.40562 1.53323 1.55169 2.24480 2.66202 2.83656 3.65543 3.79750 3.91888 3.94232 4.08998 4.18451 4.34504 4.41220 4.46658 4.51442 4.59434 4.66225 4.81148 4.86848 4.91972 5.03722 5.08121 5.13578 5.15053 5.19924 5.25800 5.33234 5.37401 5.47103 5.52779 5.63584 5.76146 5.90208 6.05326 6.22136 6.44770 6.88404 6.97763 7.06486 7.32693 7.57457 8.44866 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025631 B = 0.003548 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.163413 B = 7889.733958 C = 8877.880058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.112 4.112 6 C 0.060 3.940 7 O -0.350 6.350 8 C 0.080 3.920 9 C -0.270 4.270 10 C -0.161 4.161 11 C 0.089 3.911 12 N -0.873 5.873 13 C 0.057 3.943 14 C -0.487 4.487 15 H 0.084 0.916 16 C 0.028 3.972 17 N -0.833 5.833 18 Si 0.982 3.018 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.252 1.252 22 C -0.202 4.202 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.394 0.606 39 H 0.393 0.607 40 H 0.282 0.718 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 -10.773 -1.989 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.146 4.146 5 C -0.149 4.149 6 C -0.015 4.015 7 O -0.266 6.266 8 C 0.035 3.965 9 C -0.290 4.290 10 C -0.185 4.185 11 C -0.013 4.013 12 N -0.417 5.417 13 C 0.053 3.947 14 C -0.517 4.517 15 H 0.102 0.898 16 C -0.185 4.185 17 N -0.460 5.460 18 Si 0.803 3.197 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.176 1.176 22 C -0.224 4.224 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.222 0.778 39 H 0.222 0.778 40 H 0.092 0.908 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.954 -10.526 -1.840 13.321 hybrid contribution 0.501 0.776 0.080 0.928 sum -7.452 -9.749 -1.760 12.397 Atomic orbital electron populations 1.21785 0.95458 1.01980 1.01850 1.21533 0.96238 0.96135 1.02281 1.21589 0.94177 0.97539 1.02210 1.21468 0.96244 0.94025 1.02868 1.21536 0.91596 0.98961 1.02842 1.22814 0.95845 0.81995 1.00856 1.85944 1.20469 1.29882 1.90264 1.18851 0.81313 0.94457 1.01872 1.20506 0.93663 0.96200 1.18623 1.20112 0.94438 0.94618 1.09358 1.18067 0.85334 0.93046 1.04887 1.41708 1.02270 1.09881 1.87802 1.17360 0.90598 0.92812 0.93962 1.19448 1.03207 0.92159 1.36930 0.89818 1.26741 0.94095 1.05546 0.92148 1.69971 1.16471 1.35281 1.24229 0.85204 0.79950 0.76054 0.78449 1.19365 1.19883 1.17556 1.20314 0.95218 0.93465 1.13385 0.92811 0.92729 0.92108 0.91725 0.91831 0.92077 0.91932 0.91095 0.91298 0.91828 0.91531 0.92415 0.92836 0.86179 0.85985 0.77761 0.77836 0.90757 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.99 0.71 -1.33 16 2 C -0.12 -1.85 5.93 30.60 0.18 -1.67 16 3 C -0.12 -2.07 5.21 30.59 0.16 -1.91 16 4 C -0.11 -2.20 5.21 30.60 0.16 -2.04 16 5 C -0.11 -3.05 5.58 30.60 0.17 -2.88 16 6 C 0.06 2.07 4.73 71.98 0.34 2.41 16 7 O -0.35 -16.42 10.13 -93.08 -0.94 -17.36 16 8 C 0.08 4.12 6.67 22.46 0.15 4.27 16 9 C -0.27 -12.34 9.03 22.52 0.20 -12.13 16 10 C -0.16 -7.20 9.87 22.35 0.22 -6.98 16 11 C 0.09 4.28 6.79 38.96 0.26 4.55 16 12 N -0.87 -34.13 8.98 -50.34 -0.45 -34.59 16 13 C 0.06 3.18 5.58 -21.18 -0.12 3.06 16 14 C -0.49 -26.15 8.49 23.36 0.20 -25.95 16 15 H 0.08 4.16 6.69 -2.91 -0.02 4.14 16 16 C 0.03 1.45 5.18 85.23 0.44 1.90 16 17 N -0.83 -46.19 10.88 21.82 0.24 -45.96 16 18 Si 0.98 39.35 29.59 68.60 2.03 41.38 16 19 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 22 C -0.20 -11.61 8.60 22.78 0.20 -11.42 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.86 7.65 -2.39 -0.02 1.84 16 35 H 0.05 1.78 7.65 -2.39 -0.02 1.76 16 36 H 0.12 4.70 6.26 -2.91 -0.02 4.68 16 37 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.39 12.44 8.83 -92.71 -0.82 11.63 16 39 H 0.39 15.12 7.05 -92.71 -0.65 14.47 16 40 H 0.28 14.35 8.30 -92.71 -0.77 13.58 16 41 H 0.10 6.14 6.14 -2.91 -0.02 6.12 16 Total: -1.00 -63.97 333.89 3.70 -60.27 By element: Atomic # 1 Polarization: 46.83 SS G_CDS: -0.45 Total: 46.38 kcal Atomic # 6 Polarization: -53.40 SS G_CDS: 3.28 Total: -50.11 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -0.21 Total: -80.54 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.94 Total: -17.36 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -63.97 3.70 -60.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127605155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.339 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds