Wall clock time and date at job start Mon Mar 30 2020 07:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47248 * 2 1 4 4 C 1.53003 * 109.47141 * 119.99935 * 2 1 3 5 5 C 1.52996 * 109.47081 * 174.99860 * 4 2 1 6 6 C 1.53003 * 109.47081 * 180.02562 * 5 4 2 7 7 O 1.42900 * 109.47401 * 180.02562 * 6 5 4 8 8 C 1.35955 * 117.00128 * 179.97438 * 7 6 5 9 9 C 1.39414 * 119.82107 * 359.97438 * 8 7 6 10 10 C 1.38100 * 120.56986 * 180.02562 * 9 8 7 11 11 C 1.38715 * 120.20182 * 0.25054 * 10 9 8 12 12 N 1.38858 * 120.17845 * 179.72805 * 11 10 9 13 13 C 1.41538 * 119.63465 * 359.46221 * 11 10 9 14 14 C 1.41029 * 120.27756 * 180.27210 * 13 11 10 15 15 H 1.08002 * 120.00044 * 25.80581 * 14 13 11 16 16 C 1.39898 * 120.00341 * 205.81165 * 14 13 11 17 17 N 1.30896 * 119.99814 * 15.35536 * 16 14 13 18 18 Si 1.86803 * 120.00335 * 195.35430 * 16 14 13 19 19 H 1.48503 * 109.46939 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47262 * 119.99992 * 18 16 14 21 21 H 1.48500 * 109.47139 * 239.99817 * 18 16 14 22 22 C 1.37844 * 119.82255 * 180.02562 * 8 7 6 23 23 H 1.08992 * 109.47520 * 300.00458 * 1 2 3 24 24 H 1.09009 * 109.46994 * 60.00096 * 1 2 3 25 25 H 1.08999 * 109.47472 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47424 * 239.99715 * 2 1 3 27 27 H 1.09001 * 109.47113 * 299.99506 * 3 2 1 28 28 H 1.08990 * 109.47207 * 59.99908 * 3 2 1 29 29 H 1.09002 * 109.47238 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46881 * 54.99932 * 4 2 1 31 31 H 1.08998 * 109.46591 * 294.99948 * 4 2 1 32 32 H 1.09001 * 109.47204 * 60.00270 * 5 4 2 33 33 H 1.09004 * 109.47651 * 299.99972 * 5 4 2 34 34 H 1.08994 * 109.47107 * 59.99839 * 6 5 4 35 35 H 1.09004 * 109.46855 * 300.00459 * 6 5 4 36 36 H 1.07995 * 119.71474 * 0.02562 * 9 8 7 37 37 H 1.08007 * 119.89768 * 179.97438 * 10 9 8 38 38 H 0.96998 * 120.00321 * 0.02562 * 12 11 10 39 39 H 0.96997 * 119.99598 * 180.02562 * 12 11 10 40 40 H 0.97004 * 119.99744 * 180.02562 * 17 16 14 41 41 H 1.08005 * 120.10191 * 359.95235 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.8311 1.1880 6 6 4.0747 -1.5529 2.4369 7 8 5.4989 -1.6550 2.3800 8 6 6.1155 -2.2741 3.4216 9 6 5.3565 -2.7731 4.4792 10 6 5.9667 -3.4043 5.5452 11 6 7.3465 -3.5439 5.5767 12 7 7.9600 -4.1736 6.6515 13 6 8.1249 -3.0459 4.5046 14 6 9.5282 -3.1857 4.5199 15 1 9.9849 -3.9890 5.0789 16 6 10.3288 -2.2836 3.8110 17 7 9.8235 -1.1526 3.3880 18 14 12.1189 -2.6930 3.4683 19 1 12.4429 -4.0208 4.0489 20 1 12.3474 -2.7244 2.0013 21 1 12.9896 -1.6588 4.0828 22 6 7.4878 -2.4042 3.4267 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1582 2.1369 32 1 3.9994 0.1675 1.1421 33 1 3.8532 -1.3940 0.3002 34 1 3.6400 -2.5514 2.4824 35 1 3.7862 -0.9903 3.3249 36 1 4.2820 -2.6651 4.4647 37 1 5.3682 -3.7864 6.3590 38 1 7.4236 -4.5176 7.3828 39 1 8.9251 -4.2694 6.6709 40 1 10.3785 -0.5273 2.8962 41 1 8.0717 -2.0161 2.6053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127606561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:32 Heat of formation + Delta-G solvation = -50.305581 kcal Electronic energy + Delta-G solvation = -19283.168802 eV Core-core repulsion = 16354.739760 eV Total energy + Delta-G solvation = -2928.429042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.72220 -37.26496 -36.43221 -33.54014 -32.62935 -31.47850 -29.51128 -27.31636 -27.15140 -25.39615 -24.99268 -21.98350 -20.79681 -20.13624 -19.83025 -17.57495 -16.09008 -15.87053 -15.70295 -15.39873 -14.84401 -14.68449 -14.44214 -13.75082 -13.58733 -13.10310 -12.83056 -12.49311 -12.34147 -12.02385 -11.88304 -11.75336 -11.46754 -11.37556 -11.11701 -11.07799 -10.95216 -10.76328 -10.65101 -10.55179 -10.34301 -10.12468 -9.91301 -9.33753 -9.10292 -8.53781 -7.35073 -6.66194 -5.94849 -4.14073 2.83406 3.13023 3.16997 3.22256 3.31109 4.00478 4.16803 4.73289 4.78122 4.83469 4.92188 5.23519 5.31644 5.42356 5.50790 5.58279 5.63020 5.66353 5.75047 5.78426 5.85223 5.87599 5.95655 6.08526 6.15066 6.18898 6.24924 6.42093 6.44660 6.46361 6.96305 7.05787 7.25920 7.56177 7.61975 7.72744 8.03041 8.12266 8.38305 8.75710 8.87507 8.93201 9.15948 9.22072 10.32766 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.003973 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.301927 B = 7045.772430 C = 8052.562002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.111 4.111 5 C -0.120 4.120 6 C 0.068 3.932 7 O -0.328 6.328 8 C 0.092 3.908 9 C -0.274 4.274 10 C -0.156 4.156 11 C 0.095 3.905 12 N -0.886 5.886 13 C 0.091 3.909 14 C -0.461 4.461 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.794 5.794 18 Si 0.906 3.094 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.277 1.277 22 C -0.169 4.169 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.376 0.624 39 H 0.390 0.610 40 H 0.278 0.722 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.112 1.602 -3.856 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.008 4.008 7 O -0.243 6.243 8 C 0.048 3.952 9 C -0.294 4.294 10 C -0.180 4.180 11 C -0.005 4.005 12 N -0.429 5.429 13 C 0.086 3.914 14 C -0.492 4.492 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.420 5.420 18 Si 0.730 3.270 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.202 1.202 22 C -0.191 4.191 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.201 0.799 39 H 0.219 0.781 40 H 0.089 0.911 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.979 1.954 -4.223 11.925 hybrid contribution 0.719 -0.285 0.374 0.859 sum -10.261 1.670 -3.849 11.085 Atomic orbital electron populations 1.21843 0.95449 1.01580 1.01559 1.21105 0.95393 0.96538 0.98473 1.21911 1.01699 0.95810 1.01401 1.21555 0.94878 1.00559 0.97902 1.21580 0.94767 1.01511 0.97856 1.22448 0.81497 0.99201 0.97684 1.85968 1.19210 1.75524 1.43591 1.18748 0.92329 0.96965 0.87137 1.20161 0.97008 1.13698 0.98576 1.19708 0.92300 1.06887 0.99101 1.17908 0.91168 1.01731 0.89706 1.41830 1.08862 1.69326 1.22845 1.16982 0.92790 0.92619 0.88985 1.19163 0.90809 1.11490 1.27719 0.90737 1.25813 1.00661 0.93838 0.93950 1.69874 1.37791 1.06061 1.28261 0.86315 0.82233 0.79467 0.78938 1.18664 1.19844 1.20223 1.20361 0.89221 1.08757 1.00721 0.92756 0.92901 0.92783 0.91176 0.93057 0.92750 0.92040 0.91864 0.91812 0.90939 0.91320 0.93396 0.93346 0.89034 0.89415 0.79915 0.78130 0.91146 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.15 0.34 -0.88 16 2 C -0.10 -0.94 2.92 -90.62 -0.26 -1.20 16 3 C -0.15 -1.45 8.95 37.16 0.33 -1.11 16 4 C -0.11 -1.23 4.68 -26.73 -0.13 -1.36 16 5 C -0.12 -1.67 5.34 -26.73 -0.14 -1.81 16 6 C 0.07 1.19 4.73 37.16 0.18 1.36 16 7 O -0.33 -7.52 10.13 -19.60 -0.20 -7.72 16 8 C 0.09 2.34 6.67 -39.29 -0.26 2.08 16 9 C -0.27 -6.42 9.03 -39.19 -0.35 -6.78 16 10 C -0.16 -3.62 9.87 -39.46 -0.39 -4.01 16 11 C 0.10 2.33 6.79 -83.25 -0.56 1.77 16 12 N -0.89 -18.03 8.98 32.74 0.29 -17.73 16 13 C 0.09 2.46 5.58 -106.65 -0.60 1.87 16 14 C -0.46 -12.15 8.50 -37.90 -0.32 -12.48 16 15 H 0.07 1.85 6.69 -52.49 -0.35 1.50 16 16 C 0.07 1.89 5.18 -17.33 -0.09 1.80 16 17 N -0.79 -21.18 10.87 55.55 0.60 -20.58 16 18 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 19 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 C -0.17 -4.66 8.60 -38.80 -0.33 -4.99 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.03 6.57 -51.93 -0.34 0.69 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 35 H 0.05 0.83 7.65 -51.93 -0.40 0.44 16 36 H 0.09 1.91 6.26 -52.49 -0.33 1.58 16 37 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.38 6.41 8.83 -40.82 -0.36 6.05 16 39 H 0.39 7.74 7.05 -40.82 -0.29 7.45 16 40 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 41 H 0.13 3.69 6.14 -52.48 -0.32 3.37 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -29.03 329.95 -8.44 -37.47 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -6.49 Total: 15.41 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -2.59 Total: -25.75 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.90 Total: -38.31 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.20 Total: -7.72 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.03 -8.44 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127606561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.836 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds