Wall clock time and date at job start Mon Mar 30 2020 07:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47395 * 2 1 4 4 C 1.52994 * 109.47528 * 239.99510 * 2 1 3 5 5 C 1.53005 * 109.47002 * 60.00263 * 4 2 1 6 6 O 1.42899 * 109.47211 * 180.02562 * 5 4 2 7 7 N 1.46900 * 109.46763 * 119.99899 * 2 1 3 8 8 C 1.46900 * 111.00298 * 59.96533 * 7 2 1 9 9 H 1.08997 * 109.46993 * 342.27112 * 8 7 2 10 10 C 1.50705 * 109.46936 * 102.26715 * 8 7 2 11 11 H 1.08000 * 119.99975 * 237.90787 * 10 8 7 12 12 C 1.37877 * 120.00112 * 57.63487 * 10 8 7 13 13 N 1.31511 * 119.99955 * 348.04648 * 12 10 8 14 14 Si 1.86800 * 120.00163 * 168.04173 * 12 10 8 15 15 H 1.48505 * 109.46697 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47191 * 120.00171 * 14 12 10 17 17 H 1.48498 * 109.47022 * 240.00370 * 14 12 10 18 18 C 1.50697 * 109.47343 * 222.26897 * 8 7 2 19 19 C 1.38235 * 120.00064 * 146.21379 * 18 8 7 20 20 C 1.38240 * 119.99693 * 179.81097 * 19 18 8 21 21 C 1.38231 * 120.00192 * 0.39235 * 20 19 18 22 22 C 1.38238 * 119.99987 * 359.85798 * 21 20 19 23 23 C 1.38236 * 120.00117 * 359.95462 * 22 21 20 24 24 H 1.09000 * 109.47626 * 292.82773 * 1 2 3 25 25 H 1.08998 * 109.46980 * 52.83121 * 1 2 3 26 26 H 1.09003 * 109.47442 * 172.82116 * 1 2 3 27 27 H 1.08991 * 109.47357 * 185.98358 * 3 2 1 28 28 H 1.09000 * 109.46861 * 305.98631 * 3 2 1 29 29 H 1.09002 * 109.46593 * 65.98124 * 3 2 1 30 30 H 1.09001 * 109.47525 * 179.97438 * 4 2 1 31 31 H 1.09008 * 109.47675 * 300.00476 * 4 2 1 32 32 H 1.09001 * 109.47172 * 300.00277 * 5 4 2 33 33 H 1.09000 * 109.47086 * 59.99629 * 5 4 2 34 34 H 0.96704 * 114.00091 * 180.02562 * 6 5 4 35 35 H 1.00902 * 111.00214 * 296.00994 * 7 2 1 36 36 H 0.97000 * 120.00544 * 179.97438 * 13 12 10 37 37 H 1.07998 * 119.99837 * 359.97438 * 19 18 8 38 38 H 1.08000 * 119.99751 * 180.22388 * 20 19 18 39 39 H 1.08000 * 120.00114 * 179.83967 * 21 20 19 40 40 H 1.07999 * 120.00053 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00203 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5301 -0.0001 -2.4984 6 8 2.0060 -0.6741 -3.6652 7 7 2.0195 -0.6925 1.1995 8 6 1.5478 -2.0833 1.2339 9 1 0.7057 -2.1982 0.5516 10 6 2.6648 -3.0031 0.8126 11 1 2.5312 -3.6636 -0.0314 12 6 3.8594 -2.9974 1.5011 13 7 4.1155 -2.0399 2.3655 14 14 5.1139 -4.3497 1.2062 15 1 4.5887 -5.2995 0.1927 16 1 6.3804 -3.7510 0.7136 17 1 5.3699 -5.0731 2.4775 18 6 1.1115 -2.4313 2.6337 19 6 0.0572 -3.3029 2.8324 20 6 -0.3406 -3.6251 4.1166 21 6 0.3107 -3.0694 5.2018 22 6 1.3617 -2.1937 5.0030 23 6 1.7620 -1.8744 3.7190 24 1 -0.3634 0.3987 0.9471 25 1 -0.3633 0.6209 -0.8189 26 1 -0.3634 -1.0196 -0.1284 27 1 3.1247 1.4443 -0.1071 28 1 1.5918 1.9863 -0.8316 29 1 1.7668 1.9244 0.9387 30 1 3.1301 -0.7209 -1.2493 31 1 1.6767 -1.7490 -1.2492 32 1 0.4401 -0.0001 -2.4985 33 1 1.8934 1.0276 -2.4984 34 1 1.7210 -0.2704 -4.4964 35 1 1.7506 -0.1986 2.0373 36 1 4.9558 -2.0360 2.8502 37 1 -0.4540 -3.7342 1.9845 38 1 -1.1619 -4.3090 4.2719 39 1 -0.0017 -3.3191 6.2050 40 1 1.8703 -1.7591 5.8509 41 1 2.5833 -1.1906 3.5637 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142094199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:57 Heat of formation + Delta-G solvation = -18.244148 kcal Electronic energy + Delta-G solvation = -20943.753516 eV Core-core repulsion = 18016.714762 eV Total energy + Delta-G solvation = -2927.038754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.76301 -37.60880 -35.97444 -33.45876 -31.13270 -29.91819 -29.06639 -28.02536 -26.81468 -25.86779 -23.07965 -22.33574 -21.36651 -19.98941 -18.04527 -17.04412 -16.23709 -15.88276 -15.01537 -14.83633 -14.49024 -14.14940 -13.72554 -13.42867 -13.22265 -12.81073 -12.66962 -12.41932 -12.18541 -11.80819 -11.67834 -11.58683 -11.26004 -10.97914 -10.88608 -10.62943 -10.38037 -10.32106 -10.22776 -10.05612 -9.92801 -9.54096 -9.45509 -9.17580 -8.38434 -7.88205 -7.49743 -6.79278 -5.82110 -3.93556 2.40653 2.49885 3.36175 3.44615 3.48865 4.51624 4.58608 4.88916 5.19789 5.45826 5.51100 5.55538 5.71700 5.75201 5.76845 5.85976 5.93074 5.99532 6.01021 6.08235 6.28889 6.32798 6.41389 6.46282 6.59394 6.67084 6.71244 6.75804 6.88768 7.04119 7.09517 7.23556 7.26085 7.42910 7.60820 7.89084 7.93847 7.98082 8.16022 8.30255 8.50880 8.89451 9.13190 9.70331 11.13749 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.008500 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.745609 B = 3293.478632 C = 4320.396074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.135 4.135 4 C -0.092 4.092 5 C 0.071 3.929 6 O -0.574 6.574 7 N -0.631 5.631 8 C 0.245 3.755 9 H 0.018 0.982 10 C -0.506 4.506 11 H 0.054 0.946 12 C 0.089 3.911 13 N -0.837 5.837 14 Si 0.875 3.125 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.286 1.286 18 C -0.048 4.048 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.153 4.153 22 C -0.142 4.142 23 C -0.085 4.085 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.368 0.632 35 H 0.316 0.684 36 H 0.253 0.747 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.711 5.403 -2.361 8.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.024 3.976 3 C -0.193 4.193 4 C -0.130 4.130 5 C -0.007 4.007 6 O -0.378 6.378 7 N -0.262 5.262 8 C 0.138 3.862 9 H 0.036 0.964 10 C -0.544 4.544 11 H 0.073 0.927 12 C -0.117 4.117 13 N -0.471 5.471 14 Si 0.703 3.297 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.213 1.213 18 C -0.050 4.050 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.171 4.171 22 C -0.160 4.160 23 C -0.104 4.104 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.213 0.787 35 H 0.135 0.865 36 H 0.063 0.937 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.665 4.927 -2.046 7.782 hybrid contribution -0.438 -0.491 -0.112 0.668 sum -6.103 4.436 -2.158 7.847 Atomic orbital electron populations 1.22733 0.99357 1.01539 1.00633 1.20759 0.90152 0.93307 0.93374 1.21852 1.01790 0.95482 1.00135 1.21410 1.02440 0.99693 0.89409 1.22509 0.96786 0.95125 0.86256 1.86562 1.77690 1.57544 1.15957 1.61193 1.62160 1.02171 1.00657 1.18296 0.93433 0.86724 0.87720 0.96426 1.20891 0.97745 1.20995 1.14791 0.92748 1.24784 0.97313 0.94465 0.95140 1.69936 1.22611 1.29282 1.25267 0.86826 0.81863 0.83075 0.77900 1.19959 1.21231 1.21276 1.20752 0.91572 0.94609 0.98030 1.20917 0.98476 0.99817 0.95940 1.20803 1.00645 1.01237 0.93183 1.20812 0.98588 1.00276 0.97440 1.21149 0.97658 0.99648 0.97562 1.21820 0.97832 1.00291 0.90442 0.93398 0.93578 0.92394 0.91977 0.93697 0.93398 0.90500 0.90513 0.94417 0.94199 0.78679 0.86469 0.93703 0.87773 0.88028 0.88205 0.87939 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 7.63 37.16 0.28 -2.68 16 2 C 0.12 2.10 0.72 -131.61 -0.09 2.01 16 3 C -0.13 -2.14 8.20 37.16 0.30 -1.84 16 4 C -0.09 -1.76 4.07 -26.73 -0.11 -1.87 16 5 C 0.07 1.09 6.35 37.16 0.24 1.33 16 6 O -0.57 -8.97 13.66 -35.23 -0.48 -9.45 16 7 N -0.63 -13.46 4.49 -95.46 -0.43 -13.89 16 8 C 0.25 5.63 1.65 -70.02 -0.12 5.52 16 9 H 0.02 0.41 4.93 -51.93 -0.26 0.15 16 10 C -0.51 -13.22 7.60 -34.44 -0.26 -13.48 16 11 H 0.05 1.47 7.84 -52.49 -0.41 1.06 16 12 C 0.09 2.35 5.15 -17.82 -0.09 2.26 16 13 N -0.84 -21.88 9.13 55.43 0.51 -21.37 16 14 Si 0.88 21.21 29.55 -169.99 -5.02 16.19 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 C -0.05 -1.08 4.66 -104.62 -0.49 -1.57 16 19 C -0.13 -2.76 9.69 -39.58 -0.38 -3.15 16 20 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16 21 C -0.15 -2.85 10.05 -39.58 -0.40 -3.25 16 22 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 23 C -0.09 -1.89 7.41 -39.58 -0.29 -2.18 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.64 6.82 -51.93 -0.35 0.29 16 26 H 0.06 1.00 6.31 -51.93 -0.33 0.67 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.61 6.75 -51.93 -0.35 0.25 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 31 H 0.08 1.66 6.28 -51.92 -0.33 1.34 16 32 H 0.04 0.53 6.60 -51.93 -0.34 0.19 16 33 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 34 H 0.37 3.67 9.12 45.56 0.42 4.09 16 35 H 0.32 6.68 6.76 -39.29 -0.27 6.41 16 36 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 38 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.16 3.76 5.22 -52.49 -0.27 3.49 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -27.99 317.73 -8.20 -36.19 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -5.35 Total: 12.72 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -2.21 Total: -25.18 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.08 Total: -35.26 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.48 Total: -9.45 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.99 -8.20 -36.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142094199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.946 kcal (2) G-P(sol) polarization free energy of solvation -27.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds