Wall clock time and date at job start Mon Mar 30 2020 07:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47058 * 2 1 4 4 C 1.52996 * 109.46777 * 239.99905 * 2 1 3 5 5 C 1.53008 * 109.47267 * 60.00310 * 4 2 1 6 6 O 1.42897 * 109.47266 * 179.97438 * 5 4 2 7 7 N 1.46899 * 109.46604 * 120.00168 * 2 1 3 8 8 C 1.46904 * 110.99197 * 180.83648 * 7 2 1 9 9 H 1.09002 * 109.47510 * 1.34555 * 8 7 2 10 10 C 1.50704 * 109.47217 * 241.34080 * 8 7 2 11 11 H 1.07995 * 119.99589 * 125.73017 * 10 8 7 12 12 C 1.37874 * 120.00040 * 305.73258 * 10 8 7 13 13 N 1.31517 * 119.99997 * 8.75161 * 12 10 8 14 14 Si 1.86795 * 119.99924 * 188.74949 * 12 10 8 15 15 H 1.48503 * 109.46963 * 90.00103 * 14 12 10 16 16 H 1.48505 * 109.47343 * 210.00126 * 14 12 10 17 17 H 1.48496 * 109.47355 * 330.00183 * 14 12 10 18 18 C 1.50709 * 109.46893 * 121.34741 * 8 7 2 19 19 C 1.38232 * 120.00266 * 33.17210 * 18 8 7 20 20 C 1.38231 * 120.00004 * 180.02562 * 19 18 8 21 21 C 1.38237 * 120.00144 * 359.96066 * 20 19 18 22 22 C 1.38229 * 119.99870 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.00369 * 0.07355 * 22 21 20 24 24 H 1.09002 * 109.46906 * 294.09277 * 1 2 3 25 25 H 1.08998 * 109.47175 * 54.09417 * 1 2 3 26 26 H 1.09004 * 109.46966 * 174.09923 * 1 2 3 27 27 H 1.08998 * 109.46871 * 185.30827 * 3 2 1 28 28 H 1.08999 * 109.46868 * 305.31634 * 3 2 1 29 29 H 1.09003 * 109.46952 * 65.31417 * 3 2 1 30 30 H 1.08999 * 109.46794 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47631 * 299.99951 * 4 2 1 32 32 H 1.09004 * 109.46826 * 299.99974 * 5 4 2 33 33 H 1.08996 * 109.46866 * 59.99068 * 5 4 2 34 34 H 0.96692 * 113.99690 * 179.97438 * 6 5 4 35 35 H 1.00893 * 111.00623 * 56.88845 * 7 2 1 36 36 H 0.97004 * 119.99472 * 179.97438 * 13 12 10 37 37 H 1.07999 * 119.99715 * 359.97438 * 19 18 8 38 38 H 1.08008 * 119.99568 * 179.97438 * 20 19 18 39 39 H 1.07993 * 119.99977 * 179.71980 * 21 20 19 40 40 H 1.08000 * 120.00074 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00512 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 0.0000 -2.4985 6 8 2.0067 -0.6733 -3.6653 7 7 2.0196 -0.6925 1.1994 8 6 3.4880 -0.6948 1.2434 9 1 3.8782 -0.1563 0.3797 10 6 3.9892 -2.1158 1.2179 11 1 4.7063 -2.4221 0.4708 12 6 3.5321 -3.0248 2.1484 13 7 2.5368 -2.7049 2.9464 14 14 4.3265 -4.7106 2.2757 15 1 5.4491 -4.6568 3.2463 16 1 3.3192 -5.6989 2.7381 17 1 4.8428 -5.1164 0.9438 18 6 3.9537 -0.0205 2.5082 19 6 3.2043 -0.1276 3.6648 20 6 3.6312 0.4913 4.8248 21 6 4.8081 1.2166 4.8284 22 6 5.5581 1.3225 3.6721 23 6 5.1308 0.7045 2.5118 24 1 -0.3633 0.4195 0.9382 25 1 -0.3633 0.6027 -0.8324 26 1 -0.3633 -1.0223 -0.1057 27 1 3.1259 1.4439 -0.0951 28 1 1.6010 1.9830 -0.8385 29 1 1.7565 1.9281 0.9338 30 1 3.1300 -0.7209 -1.2495 31 1 1.6766 -1.7490 -1.2493 32 1 0.4399 0.0001 -2.4985 33 1 1.8933 1.0277 -2.4984 34 1 1.7211 -0.2699 -4.4964 35 1 1.6550 -1.6320 1.2488 36 1 2.2151 -3.3446 3.6008 37 1 2.2848 -0.6941 3.6619 38 1 3.0454 0.4080 5.7283 39 1 5.1393 1.7038 5.7334 40 1 6.4774 1.8895 3.6748 41 1 5.7166 0.7875 1.6084 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142094407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:00 Heat of formation + Delta-G solvation = -26.113787 kcal Electronic energy + Delta-G solvation = -20931.385970 eV Core-core repulsion = 18004.005963 eV Total energy + Delta-G solvation = -2927.380007 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.66717 -37.58559 -36.02238 -33.66555 -31.02980 -29.72001 -29.04915 -28.16354 -26.87035 -25.89763 -22.98070 -22.37984 -21.23163 -19.89775 -18.07638 -17.16342 -16.53291 -15.75676 -15.14546 -14.94233 -14.30636 -14.07316 -13.84524 -13.46105 -13.27924 -12.83169 -12.47198 -12.28286 -12.00787 -11.77446 -11.62553 -11.44105 -11.30137 -11.03483 -10.96959 -10.81278 -10.66340 -10.33260 -10.17444 -10.05835 -9.89877 -9.68522 -9.49750 -9.30711 -8.56498 -7.75666 -7.35143 -6.94259 -6.08231 -4.23057 2.55399 2.67240 3.25823 3.33100 3.36415 4.34553 4.54275 5.00266 5.16081 5.33878 5.37758 5.53773 5.65489 5.77254 5.83722 5.85809 5.97080 6.02579 6.09492 6.15365 6.40042 6.43224 6.43863 6.52457 6.53317 6.67095 6.75219 6.86648 6.93653 6.96569 7.12609 7.25067 7.35296 7.59000 7.70695 7.83938 7.90659 7.97876 8.14152 8.34987 8.45709 8.95861 9.16729 9.45281 10.86051 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.008600 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.129066 B = 3255.120308 C = 4348.233256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.111 3.889 3 C -0.136 4.136 4 C -0.139 4.139 5 C 0.074 3.926 6 O -0.577 6.577 7 N -0.657 5.657 8 C 0.239 3.761 9 H 0.030 0.970 10 C -0.540 4.540 11 H 0.058 0.942 12 C 0.078 3.922 13 N -0.860 5.860 14 Si 0.887 3.113 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.018 4.018 19 C -0.063 4.063 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.141 4.141 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.369 0.631 35 H 0.364 0.636 36 H 0.264 0.736 37 H 0.157 0.843 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 6.642 -4.565 8.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.019 3.981 3 C -0.194 4.194 4 C -0.179 4.179 5 C -0.004 4.004 6 O -0.381 6.381 7 N -0.291 5.291 8 C 0.131 3.869 9 H 0.048 0.952 10 C -0.579 4.579 11 H 0.076 0.924 12 C -0.127 4.127 13 N -0.497 5.497 14 Si 0.714 3.286 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.020 4.020 19 C -0.082 4.082 20 C -0.168 4.168 21 C -0.174 4.174 22 C -0.161 4.161 23 C -0.159 4.159 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.214 0.786 35 H 0.188 0.812 36 H 0.074 0.926 37 H 0.174 0.826 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.032 6.700 -3.533 8.159 hybrid contribution 0.660 -1.284 -0.788 1.644 sum -2.373 5.416 -4.321 7.323 Atomic orbital electron populations 1.21856 0.95414 1.01058 1.01067 1.20849 0.93879 0.94071 0.89329 1.21928 1.00898 0.95823 1.00755 1.22392 1.02538 1.00077 0.92893 1.22477 0.97024 0.95199 0.85688 1.86556 1.77699 1.57747 1.16104 1.60858 1.10162 1.25198 1.32879 1.18132 0.85518 0.93652 0.89589 0.95230 1.21436 1.27042 0.93996 1.15380 0.92410 1.24948 0.94428 0.98411 0.94925 1.69762 1.23916 1.35002 1.20986 0.86676 0.79475 0.83949 0.78454 1.20604 1.21179 1.19991 1.20406 0.92418 0.91249 0.97883 1.21671 1.01492 0.94539 0.90449 1.21165 0.96951 1.00101 0.98534 1.20761 0.96880 1.02504 0.97210 1.20741 0.99454 1.02200 0.93752 1.20895 0.97726 1.00032 0.97269 0.92065 0.93568 0.93196 0.92794 0.93882 0.92210 0.90810 0.91644 0.94033 0.93974 0.78580 0.81199 0.92573 0.82590 0.88241 0.88464 0.88282 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.21 37.16 0.31 -1.83 16 2 C 0.11 1.98 0.72 -131.60 -0.09 1.89 16 3 C -0.14 -2.27 7.71 37.16 0.29 -1.99 16 4 C -0.14 -2.53 4.51 -26.73 -0.12 -2.65 16 5 C 0.07 1.09 6.35 37.16 0.24 1.33 16 6 O -0.58 -8.62 13.66 -35.23 -0.48 -9.10 16 7 N -0.66 -14.06 4.54 -95.45 -0.43 -14.50 16 8 C 0.24 5.53 1.42 -70.01 -0.10 5.43 16 9 H 0.03 0.68 4.62 -51.93 -0.24 0.44 16 10 C -0.54 -13.84 8.66 -34.44 -0.30 -14.14 16 11 H 0.06 1.53 7.83 -52.49 -0.41 1.12 16 12 C 0.08 1.98 4.96 -17.82 -0.09 1.89 16 13 N -0.86 -21.65 8.36 55.43 0.46 -21.19 16 14 Si 0.89 20.54 29.55 -169.99 -5.02 15.52 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 C -0.02 -0.42 4.84 -104.62 -0.51 -0.93 16 19 C -0.06 -1.46 8.10 -39.59 -0.32 -1.78 16 20 C -0.15 -3.12 10.05 -39.58 -0.40 -3.51 16 21 C -0.16 -3.03 10.05 -39.59 -0.40 -3.42 16 22 C -0.14 -2.82 10.05 -39.59 -0.40 -3.21 16 23 C -0.14 -3.02 9.69 -39.58 -0.38 -3.41 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.61 6.76 -51.93 -0.35 0.26 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.95 6.50 -51.93 -0.34 0.62 16 28 H 0.04 0.60 6.73 -51.93 -0.35 0.25 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.51 6.49 -51.93 -0.34 1.17 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 33 H 0.04 0.57 6.55 -51.93 -0.34 0.23 16 34 H 0.37 3.48 9.12 45.56 0.42 3.90 16 35 H 0.36 8.58 6.35 -39.30 -0.25 8.33 16 36 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 37 H 0.16 3.84 5.64 -52.49 -0.30 3.54 16 38 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 41 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -26.83 318.97 -8.30 -35.13 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -5.35 Total: 15.66 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -2.28 Total: -26.33 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.03 Total: -35.69 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.48 Total: -9.10 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.83 -8.30 -35.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142094407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.019 kcal (2) G-P(sol) polarization free energy of solvation -26.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds