Wall clock time and date at job start Mon Mar 30 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00108 * 2 1 4 4 C 1.50701 * 109.47025 * 180.02562 * 3 2 1 5 5 C 1.38169 * 120.02515 * 259.95237 * 4 3 2 6 6 C 1.38241 * 120.05773 * 180.02562 * 5 4 3 7 7 C 1.38288 * 120.10640 * 359.97438 * 6 5 4 8 8 C 1.38116 * 120.06137 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.03033 * 179.97438 * 8 7 6 10 10 C 1.38703 * 120.03206 * 80.00325 * 4 3 2 11 11 O 1.35903 * 120.05406 * 0.24353 * 10 4 3 12 12 C 1.42896 * 117.00157 * 269.72940 * 11 10 4 13 13 C 1.53004 * 109.47229 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47439 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47193 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00002 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00015 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00300 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99946 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47278 * 89.99955 * 19 17 15 21 21 H 1.48500 * 109.46699 * 210.00016 * 19 17 15 22 22 H 1.48497 * 109.46726 * 329.99894 * 19 17 15 23 23 H 1.09001 * 109.47192 * 299.99763 * 1 2 3 24 24 H 1.08993 * 109.47062 * 60.00103 * 1 2 3 25 25 H 1.09001 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.00905 * 110.99820 * 123.95415 * 2 1 3 27 27 H 1.08997 * 109.47278 * 59.99611 * 3 2 1 28 28 H 1.09001 * 109.46538 * 300.00192 * 3 2 1 29 29 H 1.08005 * 119.96835 * 0.02562 * 5 4 3 30 30 H 1.07992 * 119.94707 * 179.97438 * 6 5 4 31 31 H 1.08002 * 119.96728 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.47399 * 269.97735 * 9 8 7 33 33 H 1.08998 * 109.47522 * 29.98031 * 9 8 7 34 34 H 1.09013 * 109.47157 * 149.97592 * 9 8 7 35 35 H 1.09000 * 109.47670 * 299.99857 * 12 11 10 36 36 H 1.09003 * 109.47462 * 60.00398 * 12 11 10 37 37 H 1.08999 * 109.47285 * 300.00606 * 13 12 11 38 38 H 1.09004 * 109.47221 * 59.99886 * 13 12 11 39 39 H 1.09004 * 109.46743 * 299.99703 * 14 13 12 40 40 H 1.08992 * 109.47080 * 60.00125 * 14 13 12 41 41 H 0.96991 * 120.00076 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.1991 1.5211 1.1770 6 6 5.5811 1.4849 1.1771 7 6 6.2691 1.2579 -0.0008 8 6 5.5769 1.0674 -1.1807 9 6 6.3274 0.8208 -2.4640 10 6 4.1898 1.1044 -1.1835 11 8 3.5065 0.9232 -2.3442 12 6 3.1474 -0.4177 -2.6831 13 6 2.3894 -0.4224 -4.0122 14 6 2.0043 -1.8580 -4.3747 15 6 1.2582 -1.8626 -5.6841 16 1 1.0765 -0.9343 -6.2053 17 6 0.8067 -3.0517 -6.2161 18 7 0.1552 -3.0557 -7.3586 19 14 1.1205 -4.6573 -5.3142 20 1 -0.0057 -4.9319 -4.3861 21 1 1.2322 -5.7639 -6.2981 22 1 2.3843 -4.5522 -4.5417 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8306 -0.5262 0.7814 27 1 1.6460 1.8948 0.8899 28 1 1.6459 1.8947 -0.8900 29 1 3.6639 1.6981 2.0983 30 1 6.1242 1.6340 2.0985 31 1 7.3488 1.2305 0.0018 32 1 6.5345 1.7729 -2.9525 33 1 7.2666 0.3134 -2.2439 34 1 5.7237 0.1975 -3.1239 35 1 4.0492 -1.0228 -2.7767 36 1 2.5112 -0.8322 -1.9011 37 1 1.4876 0.1826 -3.9183 38 1 3.0251 -0.0077 -4.7945 39 1 2.9060 -2.4633 -4.4687 40 1 1.3684 -2.2722 -3.5924 41 1 -0.1621 -3.8923 -7.7330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158982893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:33 Heat of formation + Delta-G solvation = -28.901228 kcal Electronic energy + Delta-G solvation = -19907.525374 eV Core-core repulsion = 16980.024494 eV Total energy + Delta-G solvation = -2927.500879 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16612 -37.19290 -36.11823 -33.94692 -32.72212 -31.80009 -30.43479 -27.62023 -26.60083 -26.40431 -23.63522 -22.87806 -21.55267 -20.78548 -20.05657 -17.48833 -16.71609 -16.63408 -15.91931 -15.15811 -14.82315 -14.45038 -14.40231 -14.15386 -13.98869 -13.56755 -13.18688 -12.78492 -12.62349 -12.47293 -12.42436 -12.00588 -11.92084 -11.75321 -11.59113 -11.29841 -11.17170 -10.81529 -10.64251 -10.02920 -9.83900 -9.63997 -9.29315 -9.14336 -8.77355 -8.50016 -8.42162 -8.39827 -6.00498 -3.98184 1.22071 1.26329 3.33504 3.40569 3.44988 3.47139 4.14225 4.37427 4.48620 4.67494 4.76861 4.89373 5.13622 5.29188 5.33470 5.37256 5.40368 5.47178 5.51337 5.66556 5.70486 5.73963 5.77547 5.91122 5.96843 6.00526 6.20275 6.27414 6.36441 6.39412 6.56487 6.58007 6.68782 6.83932 6.92504 6.95355 7.30375 7.36490 7.48445 7.80449 7.97008 8.58793 9.05106 9.61885 11.13041 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.004908 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.098148 B = 5703.981149 C = 6431.331241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.684 5.684 3 C 0.103 3.897 4 C -0.108 4.108 5 C -0.109 4.109 6 C -0.132 4.132 7 C -0.108 4.108 8 C -0.109 4.109 9 C -0.112 4.112 10 C 0.131 3.869 11 O -0.336 6.336 12 C 0.063 3.937 13 C -0.096 4.096 14 C -0.008 4.008 15 C -0.517 4.517 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.905 5.905 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.018 0.982 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.338 0.662 27 H 0.035 0.965 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.139 8.408 19.322 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.314 5.314 3 C -0.025 4.025 4 C -0.109 4.109 5 C -0.128 4.128 6 C -0.150 4.150 7 C -0.127 4.127 8 C -0.110 4.110 9 C -0.169 4.169 10 C 0.086 3.914 11 O -0.253 6.253 12 C -0.010 4.010 13 C -0.134 4.134 14 C -0.045 4.045 15 C -0.555 4.555 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.544 5.544 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.190 1.190 23 H 0.036 0.964 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.155 0.845 27 H 0.053 0.947 28 H 0.106 0.894 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.005 8.344 18.357 22.084 hybrid contribution -0.026 -0.765 1.449 1.639 sum 8.979 7.579 19.806 23.030 Atomic orbital electron populations 1.22205 0.87153 1.02280 1.00404 1.60382 1.08052 1.13413 1.49602 1.20786 0.90037 0.90299 1.01381 1.20112 0.95692 1.02412 0.92688 1.20893 0.94234 1.00831 0.96859 1.21020 0.94150 1.01841 0.98008 1.20920 0.99623 1.00269 0.91861 1.20306 0.93344 1.01039 0.96262 1.20719 0.99365 1.02375 0.94421 1.18392 0.89194 0.97735 0.86064 1.85953 1.73747 1.29732 1.35912 1.23228 0.98309 0.79923 0.99527 1.21431 0.98981 1.00057 0.92919 1.19479 0.96336 0.91612 0.97111 1.21115 1.34838 0.95146 1.04409 0.90959 1.25016 0.94639 0.99041 0.94767 1.69917 1.38586 1.27003 1.18878 0.86784 0.79335 0.83487 0.79726 1.20287 1.21436 1.19008 0.96395 0.91124 0.91131 0.84469 0.94731 0.89352 0.86276 0.86142 0.85973 0.91047 0.91851 0.90755 0.94429 0.90322 0.92061 0.92423 0.96710 0.96770 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.70 60.06 0.64 0.97 16 2 N -0.68 -8.52 5.08 -122.42 -0.62 -9.15 16 3 C 0.10 1.27 5.48 -4.98 -0.03 1.25 16 4 C -0.11 -1.41 5.41 -104.47 -0.56 -1.97 16 5 C -0.11 -1.18 9.67 -39.61 -0.38 -1.57 16 6 C -0.13 -1.35 10.04 -39.56 -0.40 -1.74 16 7 C -0.11 -1.20 9.70 -39.61 -0.38 -1.59 16 8 C -0.11 -1.46 5.89 -104.48 -0.62 -2.07 16 9 C -0.11 -1.38 9.79 36.00 0.35 -1.03 16 10 C 0.13 1.96 5.67 -39.22 -0.22 1.74 16 11 O -0.34 -5.80 8.51 -19.43 -0.17 -5.97 16 12 C 0.06 1.15 5.69 37.16 0.21 1.36 16 13 C -0.10 -2.03 5.52 -26.73 -0.15 -2.18 16 14 C -0.01 -0.19 4.04 -27.88 -0.11 -0.31 16 15 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 16 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 19 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 23 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.34 3.72 8.81 -39.29 -0.35 3.38 16 27 H 0.03 0.36 8.00 -51.93 -0.42 -0.05 16 28 H 0.09 1.24 7.85 -51.93 -0.41 0.83 16 29 H 0.12 1.02 8.04 -52.48 -0.42 0.59 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.07 1.04 6.31 -51.92 -0.33 0.72 16 35 H 0.04 0.67 7.24 -51.93 -0.38 0.29 16 36 H 0.08 1.42 6.29 -51.93 -0.33 1.09 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -31.57 335.14 -8.49 -40.05 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.78 Total: 0.83 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -2.08 Total: -20.66 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.15 Total: -36.63 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.17 Total: -5.97 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.57 -8.49 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158982893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.153 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds