Wall clock time and date at job start Mon Mar 30 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00108 * 2 1 4 4 C 1.50701 * 109.47025 * 180.02562 * 3 2 1 5 5 C 1.38169 * 120.02515 * 259.95237 * 4 3 2 6 6 C 1.38241 * 120.05773 * 180.02562 * 5 4 3 7 7 C 1.38288 * 120.10640 * 359.97438 * 6 5 4 8 8 C 1.38116 * 120.06137 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.03033 * 179.97438 * 8 7 6 10 10 C 1.38703 * 120.03206 * 80.00325 * 4 3 2 11 11 O 1.35903 * 120.05406 * 0.24353 * 10 4 3 12 12 C 1.42896 * 117.00157 * 269.72940 * 11 10 4 13 13 C 1.53004 * 109.47229 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47439 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47193 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00002 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00015 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00300 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99946 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47278 * 89.99955 * 19 17 15 21 21 H 1.48500 * 109.46699 * 210.00016 * 19 17 15 22 22 H 1.48497 * 109.46726 * 329.99894 * 19 17 15 23 23 H 1.09001 * 109.47192 * 299.99763 * 1 2 3 24 24 H 1.08993 * 109.47062 * 60.00103 * 1 2 3 25 25 H 1.09001 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.00905 * 110.99820 * 123.95415 * 2 1 3 27 27 H 1.08997 * 109.47278 * 59.99611 * 3 2 1 28 28 H 1.09001 * 109.46538 * 300.00192 * 3 2 1 29 29 H 1.08005 * 119.96835 * 0.02562 * 5 4 3 30 30 H 1.07992 * 119.94707 * 179.97438 * 6 5 4 31 31 H 1.08002 * 119.96728 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.47399 * 269.97735 * 9 8 7 33 33 H 1.08998 * 109.47522 * 29.98031 * 9 8 7 34 34 H 1.09013 * 109.47157 * 149.97592 * 9 8 7 35 35 H 1.09000 * 109.47670 * 299.99857 * 12 11 10 36 36 H 1.09003 * 109.47462 * 60.00398 * 12 11 10 37 37 H 1.08999 * 109.47285 * 300.00606 * 13 12 11 38 38 H 1.09004 * 109.47221 * 59.99886 * 13 12 11 39 39 H 1.09004 * 109.46743 * 299.99703 * 14 13 12 40 40 H 1.08992 * 109.47080 * 60.00125 * 14 13 12 41 41 H 0.96991 * 120.00076 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.1991 1.5211 1.1770 6 6 5.5811 1.4849 1.1771 7 6 6.2691 1.2579 -0.0008 8 6 5.5769 1.0674 -1.1807 9 6 6.3274 0.8208 -2.4640 10 6 4.1898 1.1044 -1.1835 11 8 3.5065 0.9232 -2.3442 12 6 3.1474 -0.4177 -2.6831 13 6 2.3894 -0.4224 -4.0122 14 6 2.0043 -1.8580 -4.3747 15 6 1.2582 -1.8626 -5.6841 16 1 1.0765 -0.9343 -6.2053 17 6 0.8067 -3.0517 -6.2161 18 7 0.1552 -3.0557 -7.3586 19 14 1.1205 -4.6573 -5.3142 20 1 -0.0057 -4.9319 -4.3861 21 1 1.2322 -5.7639 -6.2981 22 1 2.3843 -4.5522 -4.5417 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8306 -0.5262 0.7814 27 1 1.6460 1.8948 0.8899 28 1 1.6459 1.8947 -0.8900 29 1 3.6639 1.6981 2.0983 30 1 6.1242 1.6340 2.0985 31 1 7.3488 1.2305 0.0018 32 1 6.5345 1.7729 -2.9525 33 1 7.2666 0.3134 -2.2439 34 1 5.7237 0.1975 -3.1239 35 1 4.0492 -1.0228 -2.7767 36 1 2.5112 -0.8322 -1.9011 37 1 1.4876 0.1826 -3.9183 38 1 3.0251 -0.0077 -4.7945 39 1 2.9060 -2.4633 -4.4687 40 1 1.3684 -2.2722 -3.5924 41 1 -0.1621 -3.8923 -7.7330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158982893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:32 Heat of formation + Delta-G solvation = -48.098143 kcal Electronic energy + Delta-G solvation = -19908.357815 eV Core-core repulsion = 16980.024494 eV Total energy + Delta-G solvation = -2928.333320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17601 -38.36698 -37.04391 -35.88984 -33.83306 -33.62254 -31.47817 -29.26354 -27.64555 -27.46263 -24.71098 -24.52452 -22.55166 -21.95302 -21.69989 -18.99708 -18.49684 -17.71641 -16.89282 -16.41966 -16.05905 -15.90878 -15.74518 -15.36216 -15.10248 -14.75328 -14.45884 -14.29852 -14.05588 -13.66682 -13.54834 -13.34770 -12.94003 -12.89854 -12.82263 -12.58625 -12.43562 -12.18958 -12.07179 -11.84630 -11.63698 -11.59413 -11.29579 -10.76164 -10.59430 -9.65963 -9.39779 -9.31767 -8.28980 -6.33831 0.28477 0.37420 1.36815 1.38922 1.51403 2.37213 2.51204 3.03029 3.06018 3.46186 3.76308 3.89793 4.10287 4.18132 4.32130 4.36688 4.42531 4.49142 4.52374 4.58240 4.59547 4.61690 4.73148 4.76914 4.84913 4.89136 4.97072 5.04632 5.06978 5.09995 5.30043 5.45824 5.51564 5.53244 5.56662 5.64122 5.67081 5.91551 6.00834 6.28308 6.46589 6.70883 6.78254 7.30483 8.88089 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.004908 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.098148 B = 5703.981149 C = 6431.331241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.700 5.700 3 C 0.108 3.892 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.124 4.124 9 C -0.111 4.111 10 C 0.090 3.910 11 O -0.350 6.350 12 C 0.080 3.920 13 C -0.088 4.088 14 C -0.001 4.001 15 C -0.534 4.534 16 H 0.028 0.972 17 C 0.005 3.995 18 N -0.952 5.952 19 Si 0.953 3.047 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.246 1.246 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.348 0.652 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.022 0.978 40 H 0.023 0.977 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.865 7.671 22.896 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.331 5.331 3 C -0.020 4.020 4 C -0.117 4.117 5 C -0.126 4.126 6 C -0.140 4.140 7 C -0.128 4.128 8 C -0.124 4.124 9 C -0.168 4.168 10 C 0.046 3.954 11 O -0.268 6.268 12 C 0.007 3.993 13 C -0.125 4.125 14 C -0.038 4.038 15 C -0.572 4.572 16 H 0.047 0.953 17 C -0.191 4.191 18 N -0.592 5.592 19 Si 0.775 3.225 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.170 1.170 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.166 0.834 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.741 7.630 21.948 25.599 hybrid contribution -0.540 -0.399 0.349 0.757 sum 10.201 7.231 22.298 25.564 Atomic orbital electron populations 1.22163 0.86752 1.02423 1.00455 1.60309 1.08622 1.13764 1.50442 1.20690 0.89979 0.90272 1.01078 1.20252 0.95942 1.02579 0.92933 1.21221 0.94824 0.99689 0.96890 1.21467 0.94057 0.99512 0.98960 1.21257 1.01003 0.99305 0.91214 1.20504 0.92914 1.01568 0.97459 1.20715 0.99855 1.02276 0.93942 1.18734 0.90059 1.00693 0.85887 1.85912 1.74417 1.28744 1.37724 1.22829 0.97948 0.81112 0.97445 1.21215 0.98711 0.97880 0.94742 1.19361 0.95944 0.93718 0.94810 1.21426 1.35684 0.93811 1.06261 0.95312 1.26025 0.94093 1.03435 0.95587 1.70073 1.39893 1.28429 1.20843 0.85625 0.80341 0.77843 0.78662 1.18861 1.20780 1.16951 0.94339 0.93008 0.90926 0.83402 0.92514 0.92030 0.83563 0.82734 0.83400 0.90845 0.89636 0.93171 0.94083 0.90076 0.93357 0.93554 0.96011 0.95838 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.70 127.69 1.37 2.05 16 2 N -0.70 -16.70 5.08 -541.24 -2.75 -19.44 16 3 C 0.11 2.56 5.48 85.56 0.47 3.03 16 4 C -0.12 -2.84 5.41 -19.77 -0.11 -2.95 16 5 C -0.11 -1.96 9.67 22.25 0.22 -1.74 16 6 C -0.12 -1.97 10.04 22.28 0.22 -1.75 16 7 C -0.11 -2.07 9.70 22.25 0.22 -1.86 16 8 C -0.12 -3.13 5.89 -19.77 -0.12 -3.25 16 9 C -0.11 -2.66 9.79 71.24 0.70 -1.96 16 10 C 0.09 2.66 5.67 22.50 0.13 2.78 16 11 O -0.35 -12.37 8.51 -92.45 -0.79 -13.15 16 12 C 0.08 2.94 5.69 71.98 0.41 3.35 16 13 C -0.09 -3.83 5.52 30.60 0.17 -3.66 16 14 C 0.00 -0.04 4.04 29.85 0.12 0.08 16 15 C -0.53 -32.13 9.66 25.60 0.25 -31.88 16 16 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 17 C 0.01 0.31 5.47 84.65 0.46 0.78 16 18 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 19 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 23 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.35 7.00 8.81 -89.69 -0.79 6.21 16 27 H 0.06 1.06 8.00 -2.39 -0.02 1.04 16 28 H 0.06 1.77 7.85 -2.39 -0.02 1.75 16 29 H 0.15 1.83 8.04 -2.91 -0.02 1.81 16 30 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 34 H 0.05 1.42 6.31 -2.38 -0.02 1.41 16 35 H 0.04 1.45 7.24 -2.39 -0.02 1.44 16 36 H 0.08 2.90 6.29 -2.39 -0.01 2.89 16 37 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 40 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -70.41 335.14 3.30 -67.11 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.15 Total: 16.36 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 4.50 Total: -36.99 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.45 Total: -80.20 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.79 Total: -13.15 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -70.41 3.30 -67.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158982893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.007 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds