Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38127 * 120.03698 * 2 1 4 4 C 1.38282 * 120.06686 * 179.97438 * 3 2 1 5 5 C 1.38323 * 120.14193 * 359.76492 * 4 3 2 6 6 C 1.38081 * 120.06530 * 0.50934 * 5 4 3 7 7 C 1.50697 * 120.03458 * 179.74401 * 6 5 4 8 8 N 1.46905 * 109.47066 * 259.72755 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47245 * 64.99745 * 10 9 8 12 12 C 1.52999 * 109.46840 * 184.99885 * 10 9 8 13 13 C 1.38857 * 120.03612 * 180.02562 * 2 1 3 14 14 O 1.35757 * 120.06618 * 0.02562 * 13 2 1 15 15 C 1.34830 * 117.00110 * 269.97873 * 14 13 2 16 16 H 1.08002 * 119.99898 * 359.97438 * 15 14 13 17 17 C 1.38649 * 119.99871 * 179.97438 * 15 14 13 18 18 N 1.31550 * 120.00454 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99557 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46998 * 90.00488 * 19 17 15 21 21 H 1.48505 * 109.47045 * 209.99608 * 19 17 15 22 22 H 1.48492 * 109.47220 * 329.99891 * 19 17 15 23 23 H 1.09005 * 109.47290 * 269.98563 * 1 2 3 24 24 H 1.08999 * 109.46808 * 29.98271 * 1 2 3 25 25 H 1.08993 * 109.47265 * 149.97816 * 1 2 3 26 26 H 1.07997 * 119.96166 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.92624 * 180.02562 * 4 3 2 28 28 H 1.07992 * 119.96986 * 180.27841 * 5 4 3 29 29 H 1.09001 * 109.47558 * 139.72919 * 7 6 5 30 30 H 1.08998 * 109.47216 * 19.72581 * 7 6 5 31 31 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 32 32 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 33 33 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 34 34 H 1.09000 * 109.46869 * 304.99619 * 10 9 8 35 35 H 1.09007 * 109.46679 * 59.99874 * 11 10 9 36 36 H 1.08993 * 109.46950 * 179.97438 * 11 10 9 37 37 H 1.08997 * 109.47303 * 300.00187 * 11 10 9 38 38 H 1.08997 * 109.47237 * 59.99969 * 12 10 9 39 39 H 1.09004 * 109.46987 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47172 * 299.99548 * 12 10 9 41 41 H 0.97002 * 120.00193 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5812 1.1965 0.0005 5 6 4.2764 0.0007 0.0060 6 6 3.5910 -1.1980 0.0003 7 6 4.3491 -2.5004 0.0004 8 7 4.3877 -3.0446 -1.3636 9 6 5.1201 -4.3175 -1.4020 10 6 5.1395 -4.8517 -2.8356 11 6 5.9393 -3.8974 -3.7247 12 6 5.7923 -6.2352 -2.8554 13 6 2.2020 -1.2021 -0.0005 14 8 1.5253 -2.3790 -0.0016 15 6 1.2201 -2.9107 1.1993 16 1 1.5136 -2.4017 2.1055 17 6 0.5295 -4.1108 1.2707 18 7 0.1716 -4.7305 0.1669 19 14 0.1073 -4.8478 2.9345 20 1 -1.2180 -4.3447 3.3768 21 1 0.0629 -6.3280 2.8234 22 1 1.1413 -4.4566 3.9259 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3633 -0.8897 -0.5141 26 1 1.6584 2.1310 0.0004 27 1 4.1195 2.1328 0.0010 28 1 5.3563 0.0045 0.0109 29 1 3.8515 -3.2105 0.6609 30 1 5.3665 -2.3286 0.3519 31 1 4.7865 -2.3781 -2.0077 32 1 6.1429 -4.1586 -1.0600 33 1 4.6275 -5.0399 -0.7512 34 1 4.1182 -4.9264 -3.2092 35 1 6.9606 -3.8227 -3.3509 36 1 5.9535 -4.2783 -4.7458 37 1 5.4743 -2.9118 -3.7105 38 1 5.2225 -6.9150 -2.2220 39 1 5.8065 -6.6157 -3.8768 40 1 6.8136 -6.1605 -2.4818 41 1 -0.3119 -5.5700 0.2169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159289061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = -19.372213 kcal Electronic energy + Delta-G solvation = -20227.409020 eV Core-core repulsion = 17300.321349 eV Total energy + Delta-G solvation = -2927.087670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.23452 -37.00584 -36.02988 -33.93538 -31.93788 -31.52806 -29.43263 -27.05058 -26.26486 -25.79406 -24.55282 -23.11519 -20.93864 -20.11872 -19.59151 -17.78904 -16.34663 -15.94776 -15.17711 -14.84870 -14.48617 -14.27421 -13.99117 -13.50537 -13.41748 -13.13654 -12.53481 -12.47332 -12.40035 -12.10797 -11.96092 -11.65635 -11.49448 -11.44946 -11.23839 -11.02553 -10.89367 -10.78015 -10.55087 -10.40344 -10.36866 -10.31565 -9.70791 -9.49247 -8.09716 -8.04143 -7.73377 -7.52336 -5.97906 -3.65635 1.97810 2.10851 3.28078 3.32090 3.34943 4.18496 4.42145 4.84752 5.14031 5.17235 5.31468 5.32868 5.39541 5.49503 5.54683 5.67243 5.72095 5.78266 5.84597 5.92042 5.94656 6.01812 6.05478 6.15780 6.17376 6.24305 6.32993 6.43909 6.45710 6.52906 6.63892 6.69225 6.86208 7.01017 7.05784 7.17154 7.44340 7.47067 7.63723 7.74536 7.99112 8.38102 9.44665 10.23582 11.21090 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.008281 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.116837 B = 3380.576240 C = 5179.180390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.154 4.154 5 C -0.115 4.115 6 C -0.119 4.119 7 C 0.115 3.885 8 N -0.667 5.667 9 C 0.070 3.930 10 C -0.097 4.097 11 C -0.147 4.147 12 C -0.144 4.144 13 C 0.168 3.832 14 O -0.224 6.224 15 C -0.358 4.358 16 H 0.063 0.937 17 C 0.032 3.968 18 N -0.875 5.875 19 Si 0.921 3.079 20 H -0.280 1.280 21 H -0.283 1.283 22 H -0.275 1.275 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.018 0.982 31 H 0.329 0.671 32 H 0.017 0.983 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 4.653 -2.884 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.124 4.124 3 C -0.131 4.131 4 C -0.173 4.173 5 C -0.133 4.133 6 C -0.120 4.120 7 C -0.014 4.014 8 N -0.298 5.298 9 C -0.060 4.060 10 C -0.116 4.116 11 C -0.204 4.204 12 C -0.202 4.202 13 C 0.121 3.879 14 O -0.136 6.136 15 C -0.434 4.434 16 H 0.081 0.919 17 C -0.168 4.168 18 N -0.517 5.517 19 Si 0.748 3.252 20 H -0.206 1.206 21 H -0.208 1.208 22 H -0.200 1.200 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.036 0.964 31 H 0.147 0.853 32 H 0.035 0.965 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.631 4.058 -3.041 10.010 hybrid contribution 0.805 0.116 1.088 1.359 sum 9.436 4.174 -1.953 10.501 Atomic orbital electron populations 1.20540 0.91142 1.02104 1.01878 1.20473 0.96846 0.92875 1.02157 1.20802 0.94002 0.96773 1.01564 1.20793 0.94169 0.97133 1.05162 1.20783 0.98603 0.92097 1.01860 1.20256 0.94202 0.94260 1.03326 1.20640 0.95659 0.94119 0.90937 1.60321 1.57189 1.05008 1.07244 1.21951 0.94777 0.92689 0.96558 1.21126 1.00677 0.94455 0.95348 1.21851 0.99407 0.99835 0.99321 1.21787 1.00217 0.96733 1.01423 1.18818 0.89349 0.87703 0.91984 1.83883 1.71355 1.30014 1.28395 1.20734 1.36243 1.04784 0.81679 0.91933 1.24910 0.97973 0.96162 0.97721 1.70035 1.39192 1.16663 1.25777 0.86030 0.78770 0.78500 0.81910 1.20607 1.20850 1.20010 0.91918 0.93243 0.90224 0.87037 0.87187 0.87344 0.88759 0.96401 0.85276 0.96496 0.90730 0.89820 0.93419 0.92951 0.92406 0.92462 0.92879 0.93240 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 9.77 36.01 0.35 -1.62 16 2 C -0.12 -2.57 5.90 -104.43 -0.62 -3.18 16 3 C -0.11 -1.98 9.70 -39.61 -0.38 -2.37 16 4 C -0.15 -2.52 10.04 -39.53 -0.40 -2.92 16 5 C -0.11 -1.99 9.66 -39.61 -0.38 -2.37 16 6 C -0.12 -2.46 5.41 -104.44 -0.56 -3.02 16 7 C 0.11 2.26 5.48 -4.97 -0.03 2.23 16 8 N -0.67 -12.50 6.49 -115.05 -0.75 -13.25 16 9 C 0.07 1.14 5.14 -3.82 -0.02 1.12 16 10 C -0.10 -1.39 3.13 -90.62 -0.28 -1.68 16 11 C -0.15 -1.80 8.97 37.16 0.33 -1.46 16 12 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 13 C 0.17 3.95 5.54 -39.11 -0.22 3.73 16 14 O -0.22 -6.23 8.11 0.03 0.00 -6.23 16 15 C -0.36 -10.07 9.05 30.88 0.28 -9.79 16 16 H 0.06 1.72 7.76 -52.49 -0.41 1.32 16 17 C 0.03 0.91 5.49 -17.52 -0.10 0.81 16 18 N -0.88 -26.46 13.67 55.48 0.76 -25.71 16 19 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 25 H 0.08 1.79 7.53 -51.93 -0.39 1.40 16 26 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.59 8.03 -52.49 -0.42 1.17 16 29 H 0.09 2.17 7.19 -51.93 -0.37 1.80 16 30 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 31 H 0.33 5.58 6.98 -39.29 -0.27 5.30 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.74 6.68 -51.93 -0.35 0.39 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -30.80 339.57 -8.41 -39.21 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.84 Total: 6.20 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -1.68 Total: -21.93 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.01 Total: -38.96 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: 0.00 Total: -6.23 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.80 -8.41 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159289061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.836 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds