Wall clock time and date at job start Mon Mar 30 2020 06:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38127 * 120.03698 * 2 1 4 4 C 1.38282 * 120.06686 * 179.97438 * 3 2 1 5 5 C 1.38323 * 120.14193 * 359.76492 * 4 3 2 6 6 C 1.38081 * 120.06530 * 0.50934 * 5 4 3 7 7 C 1.50697 * 120.03458 * 179.74401 * 6 5 4 8 8 N 1.46905 * 109.47066 * 259.72755 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47245 * 64.99745 * 10 9 8 12 12 C 1.52999 * 109.46840 * 184.99885 * 10 9 8 13 13 C 1.38857 * 120.03612 * 180.02562 * 2 1 3 14 14 O 1.35757 * 120.06618 * 0.02562 * 13 2 1 15 15 C 1.34830 * 117.00110 * 269.97873 * 14 13 2 16 16 H 1.08002 * 119.99898 * 359.97438 * 15 14 13 17 17 C 1.38649 * 119.99871 * 179.97438 * 15 14 13 18 18 N 1.31550 * 120.00454 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99557 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46998 * 90.00488 * 19 17 15 21 21 H 1.48505 * 109.47045 * 209.99608 * 19 17 15 22 22 H 1.48492 * 109.47220 * 329.99891 * 19 17 15 23 23 H 1.09005 * 109.47290 * 269.98563 * 1 2 3 24 24 H 1.08999 * 109.46808 * 29.98271 * 1 2 3 25 25 H 1.08993 * 109.47265 * 149.97816 * 1 2 3 26 26 H 1.07997 * 119.96166 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.92624 * 180.02562 * 4 3 2 28 28 H 1.07992 * 119.96986 * 180.27841 * 5 4 3 29 29 H 1.09001 * 109.47558 * 139.72919 * 7 6 5 30 30 H 1.08998 * 109.47216 * 19.72581 * 7 6 5 31 31 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 32 32 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 33 33 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 34 34 H 1.09000 * 109.46869 * 304.99619 * 10 9 8 35 35 H 1.09007 * 109.46679 * 59.99874 * 11 10 9 36 36 H 1.08993 * 109.46950 * 179.97438 * 11 10 9 37 37 H 1.08997 * 109.47303 * 300.00187 * 11 10 9 38 38 H 1.08997 * 109.47237 * 59.99969 * 12 10 9 39 39 H 1.09004 * 109.46987 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47172 * 299.99548 * 12 10 9 41 41 H 0.97002 * 120.00193 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5812 1.1965 0.0005 5 6 4.2764 0.0007 0.0060 6 6 3.5910 -1.1980 0.0003 7 6 4.3491 -2.5004 0.0004 8 7 4.3877 -3.0446 -1.3636 9 6 5.1201 -4.3175 -1.4020 10 6 5.1395 -4.8517 -2.8356 11 6 5.9393 -3.8974 -3.7247 12 6 5.7923 -6.2352 -2.8554 13 6 2.2020 -1.2021 -0.0005 14 8 1.5253 -2.3790 -0.0016 15 6 1.2201 -2.9107 1.1993 16 1 1.5136 -2.4017 2.1055 17 6 0.5295 -4.1108 1.2707 18 7 0.1716 -4.7305 0.1669 19 14 0.1073 -4.8478 2.9345 20 1 -1.2180 -4.3447 3.3768 21 1 0.0629 -6.3280 2.8234 22 1 1.1413 -4.4566 3.9259 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3633 -0.8897 -0.5141 26 1 1.6584 2.1310 0.0004 27 1 4.1195 2.1328 0.0010 28 1 5.3563 0.0045 0.0109 29 1 3.8515 -3.2105 0.6609 30 1 5.3665 -2.3286 0.3519 31 1 4.7865 -2.3781 -2.0077 32 1 6.1429 -4.1586 -1.0600 33 1 4.6275 -5.0399 -0.7512 34 1 4.1182 -4.9264 -3.2092 35 1 6.9606 -3.8227 -3.3509 36 1 5.9535 -4.2783 -4.7458 37 1 5.4743 -2.9118 -3.7105 38 1 5.2225 -6.9150 -2.2220 39 1 5.8065 -6.6157 -3.8768 40 1 6.8136 -6.1605 -2.4818 41 1 -0.3119 -5.5700 0.2169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159289061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:55 Heat of formation + Delta-G solvation = -38.339721 kcal Electronic energy + Delta-G solvation = -20228.231512 eV Core-core repulsion = 17300.321349 eV Total energy + Delta-G solvation = -2927.910163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82828 -38.34186 -37.80476 -35.29291 -33.97957 -33.05909 -30.94896 -28.05966 -27.92490 -27.19434 -26.54676 -24.56487 -22.48759 -21.57898 -20.83892 -19.78692 -18.19175 -17.41539 -16.68176 -16.34212 -15.99614 -15.80047 -15.52257 -15.10573 -14.74204 -14.64035 -14.14437 -13.82584 -13.70182 -13.47045 -13.40984 -13.32344 -13.10493 -12.83401 -12.73390 -12.56901 -12.55714 -12.29593 -12.16396 -11.82589 -11.63504 -11.58451 -11.45560 -11.31361 -10.20481 -9.49810 -9.16569 -9.12315 -8.13592 -5.85199 0.51375 0.59144 1.36649 1.41541 1.50431 2.31551 2.85947 3.17938 3.46545 3.90142 3.97280 4.00707 4.05909 4.09876 4.22671 4.23273 4.40485 4.53981 4.57077 4.69922 4.73884 4.77264 4.81443 4.84233 4.84741 4.94648 4.99150 5.07416 5.09888 5.20670 5.24916 5.32265 5.43876 5.45898 5.46396 5.64058 5.68532 5.95280 6.17663 6.20603 6.28015 6.63574 7.28091 8.24770 9.09247 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.008281 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.116837 B = 3380.576240 C = 5179.180390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.145 4.145 3 C -0.108 4.108 4 C -0.137 4.137 5 C -0.109 4.109 6 C -0.133 4.133 7 C 0.123 3.877 8 N -0.688 5.688 9 C 0.073 3.927 10 C -0.096 4.096 11 C -0.139 4.139 12 C -0.139 4.139 13 C 0.110 3.890 14 O -0.258 6.258 15 C -0.354 4.354 16 H 0.058 0.942 17 C -0.029 4.029 18 N -0.926 5.926 19 Si 0.993 3.007 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.263 1.263 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.036 0.964 26 H 0.148 0.852 27 H 0.157 0.843 28 H 0.144 0.856 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.341 0.659 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.694 7.018 -2.507 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C -0.126 4.126 4 C -0.154 4.154 5 C -0.128 4.128 6 C -0.134 4.134 7 C -0.005 4.005 8 N -0.321 5.321 9 C -0.056 4.056 10 C -0.115 4.115 11 C -0.197 4.197 12 C -0.197 4.197 13 C 0.065 3.935 14 O -0.171 6.171 15 C -0.431 4.431 16 H 0.076 0.924 17 C -0.224 4.224 18 N -0.570 5.570 19 Si 0.815 3.185 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.188 1.188 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.055 0.945 26 H 0.165 0.835 27 H 0.175 0.825 28 H 0.162 0.838 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.160 0.840 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.946 6.455 -2.666 12.984 hybrid contribution 0.183 -0.450 0.928 1.047 sum 11.129 6.005 -1.738 12.764 Atomic orbital electron populations 1.20458 0.91211 1.01705 1.01571 1.20672 0.97253 0.93443 1.03179 1.21187 0.94937 0.96576 0.99893 1.21347 0.93805 0.98543 1.01752 1.21157 1.00364 0.91046 1.00221 1.20401 0.93261 0.95895 1.03831 1.20443 0.96411 0.92962 0.90733 1.60214 1.58626 1.06064 1.07153 1.21931 0.95141 0.91061 0.97468 1.21094 0.99652 0.96456 0.94284 1.21784 0.99672 0.98630 0.99570 1.21749 1.00645 0.94968 1.02293 1.19314 0.90826 0.87218 0.96187 1.83865 1.72400 1.32390 1.28478 1.20981 1.35166 1.04778 0.82181 0.92388 1.25987 0.98013 0.96525 1.01839 1.70204 1.40948 1.17329 1.28529 0.84947 0.78942 0.77528 0.77059 1.19497 1.20386 1.18775 0.92197 0.89564 0.94521 0.83458 0.82525 0.83847 0.93480 0.93523 0.83971 0.94116 0.94068 0.93166 0.91631 0.91551 0.93195 0.93790 0.91295 0.91444 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.72 9.77 71.24 0.70 -3.03 16 2 C -0.14 -6.03 5.90 -19.74 -0.12 -6.15 16 3 C -0.11 -3.42 9.70 22.25 0.22 -3.21 16 4 C -0.14 -3.82 10.04 22.30 0.22 -3.60 16 5 C -0.11 -3.44 9.66 22.25 0.22 -3.22 16 6 C -0.13 -5.46 5.41 -19.74 -0.11 -5.56 16 7 C 0.12 4.96 5.48 85.55 0.47 5.43 16 8 N -0.69 -26.58 6.49 -517.92 -3.36 -29.94 16 9 C 0.07 2.45 5.14 86.30 0.44 2.90 16 10 C -0.10 -2.78 3.13 -10.79 -0.03 -2.81 16 11 C -0.14 -3.19 8.97 71.98 0.65 -2.55 16 12 C -0.14 -3.31 9.19 71.98 0.66 -2.65 16 13 C 0.11 5.33 5.54 22.58 0.13 5.45 16 14 O -0.26 -15.32 8.11 -22.82 -0.19 -15.50 16 15 C -0.35 -21.07 9.05 67.92 0.61 -20.45 16 16 H 0.06 3.37 7.76 -2.91 -0.02 3.34 16 17 C -0.03 -1.75 5.49 84.83 0.47 -1.28 16 18 N -0.93 -59.34 13.67 21.61 0.30 -59.05 16 19 Si 0.99 46.00 29.55 68.60 2.03 48.03 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 24 H 0.09 2.71 8.09 -2.39 -0.02 2.69 16 25 H 0.04 1.75 7.53 -2.39 -0.02 1.73 16 26 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 27 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.14 3.49 8.03 -2.91 -0.02 3.46 16 29 H 0.05 2.32 7.19 -2.39 -0.02 2.30 16 30 H 0.05 1.56 8.00 -2.39 -0.02 1.54 16 31 H 0.34 11.51 6.98 -89.69 -0.63 10.88 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 1.21 6.68 -2.39 -0.02 1.20 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -73.04 339.57 3.66 -69.38 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.37 Total: 27.80 kcal Atomic # 6 Polarization: -45.25 SS G_CDS: 4.52 Total: -40.73 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -3.06 Total: -88.99 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.19 Total: -15.50 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -73.04 3.66 -69.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159289061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.040 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds