Wall clock time and date at job start Mon Mar 30 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38173 * 120.02800 * 2 1 4 4 C 1.38241 * 120.05599 * 180.30159 * 3 2 1 5 5 C 1.38291 * 120.11180 * 359.44059 * 4 3 2 6 6 C 1.38121 * 120.05218 * 0.25948 * 5 4 3 7 7 C 1.50707 * 120.02446 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47232 * 265.00129 * 7 6 5 9 9 N 1.46896 * 109.46833 * 180.02562 * 8 7 6 10 10 C 1.38706 * 120.03199 * 179.72372 * 2 1 3 11 11 O 1.35905 * 120.05377 * 0.02562 * 10 2 1 12 12 C 1.42899 * 116.99825 * 269.98079 * 11 10 2 13 13 C 1.53003 * 109.47057 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46844 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46689 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00207 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00049 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00505 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99920 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47246 * 90.00276 * 19 17 15 21 21 H 1.48498 * 109.47235 * 210.00320 * 19 17 15 22 22 H 1.48502 * 109.46947 * 330.00223 * 19 17 15 23 23 H 1.08999 * 109.46944 * 270.27606 * 1 2 3 24 24 H 1.09000 * 109.47353 * 30.27539 * 1 2 3 25 25 H 1.08997 * 109.47139 * 150.27990 * 1 2 3 26 26 H 1.08001 * 119.97107 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.94762 * 179.72634 * 4 3 2 28 28 H 1.07998 * 119.97202 * 180.27812 * 5 4 3 29 29 H 1.08998 * 109.46954 * 25.00530 * 7 6 5 30 30 H 1.09004 * 109.46731 * 144.99852 * 7 6 5 31 31 H 1.09001 * 109.46757 * 300.00150 * 8 7 6 32 32 H 1.08998 * 109.46944 * 59.99789 * 8 7 6 33 33 H 1.00900 * 110.99933 * 179.97438 * 9 8 7 34 34 H 1.00900 * 111.00363 * 303.95438 * 9 8 7 35 35 H 1.08997 * 109.47071 * 299.99544 * 12 11 10 36 36 H 1.09000 * 109.47725 * 59.99925 * 12 11 10 37 37 H 1.08997 * 109.46765 * 299.99679 * 13 12 11 38 38 H 1.08998 * 109.47475 * 59.99953 * 13 12 11 39 39 H 1.08997 * 109.47127 * 299.99395 * 14 13 12 40 40 H 1.08995 * 109.47481 * 60.00132 * 14 13 12 41 41 H 0.96998 * 120.00739 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0063 5 6 4.2752 0.0010 -0.0009 6 6 3.5887 -1.1974 0.0053 7 6 4.3461 -2.5003 0.0106 8 6 4.4923 -3.0111 -1.4242 9 7 5.2300 -4.2814 -1.4189 10 6 2.2012 -1.2008 0.0058 11 8 1.5234 -2.3788 0.0109 12 6 1.1998 -2.9354 1.2866 13 6 0.4439 -4.2514 1.0920 14 6 0.0969 -4.8470 2.4579 15 6 -0.6471 -6.1435 2.2661 16 1 -0.8522 -6.5061 1.2697 17 6 -1.0668 -6.8662 3.3627 18 7 -1.7165 -7.9973 3.1954 19 14 -0.7126 -6.2387 5.0861 20 1 -1.8326 -5.3747 5.5382 21 1 -0.5707 -7.3904 6.0128 22 1 0.5470 -5.4523 5.0774 23 1 -0.3633 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6584 2.1316 0.0004 27 1 4.1195 2.1330 -0.0108 28 1 5.3552 0.0042 -0.0013 29 1 5.3343 -2.3444 0.4432 30 1 3.8014 -3.2347 0.6041 31 1 3.5040 -3.1670 -1.8568 32 1 5.0368 -2.2767 -2.0176 33 1 5.3394 -4.6398 -2.3557 34 1 6.1247 -4.1781 -0.9641 35 1 2.1172 -3.1230 1.8445 36 1 0.5744 -2.2353 1.8406 37 1 -0.4735 -4.0642 0.5339 38 1 1.0696 -4.9514 0.5383 39 1 1.0140 -5.0341 3.0163 40 1 -0.5291 -4.1470 3.0112 41 1 -2.0114 -8.5060 3.9668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159929542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:19 Heat of formation + Delta-G solvation = -40.488805 kcal Electronic energy + Delta-G solvation = -19665.195884 eV Core-core repulsion = 16737.192530 eV Total energy + Delta-G solvation = -2928.003354 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25123 -37.30981 -35.72198 -34.02147 -32.91310 -31.86498 -30.79058 -27.96997 -27.05813 -26.55026 -23.22106 -22.59335 -21.59253 -20.61781 -20.13692 -17.53215 -16.71672 -16.60096 -16.05256 -15.37595 -15.06388 -14.62913 -14.50379 -14.13566 -13.81061 -13.72767 -13.26787 -12.86349 -12.68605 -12.59613 -12.41500 -12.25029 -11.87790 -11.59486 -11.37586 -11.29552 -11.08363 -10.85321 -10.73690 -10.08280 -9.90590 -9.69185 -9.43550 -9.18558 -8.78620 -8.67681 -8.52471 -8.46411 -6.02442 -4.00674 1.18012 1.24175 3.31572 3.38978 3.42418 3.43152 4.06800 4.39309 4.46391 4.70406 4.82270 4.93080 5.07626 5.18750 5.23661 5.30974 5.38160 5.43301 5.53809 5.58345 5.62148 5.66941 5.70643 5.78737 5.95346 6.00531 6.13084 6.23252 6.36260 6.40096 6.50327 6.51207 6.59187 6.80916 6.86709 7.03698 7.29490 7.34142 7.40918 7.74647 7.85668 8.55885 9.02993 9.59417 11.11022 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.004675 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.264535 B = 5988.329161 C = 6811.605863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.114 4.114 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.099 4.099 7 C -0.076 4.076 8 C 0.072 3.928 9 N -0.849 5.849 10 C 0.109 3.891 11 O -0.333 6.333 12 C 0.069 3.931 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.519 4.519 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.021 0.979 33 H 0.342 0.658 34 H 0.337 0.663 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.012 0.988 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.936 18.521 -7.435 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.132 4.132 4 C -0.146 4.146 5 C -0.131 4.131 6 C -0.100 4.100 7 C -0.114 4.114 8 C -0.058 4.058 9 N -0.378 5.378 10 C 0.065 3.935 11 O -0.250 6.250 12 C -0.005 4.005 13 C -0.137 4.137 14 C -0.047 4.047 15 C -0.557 4.557 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.190 1.190 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.039 0.961 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.166 17.973 -7.053 22.821 hybrid contribution 0.916 0.928 0.601 1.436 sum 13.082 18.901 -6.453 23.875 Atomic orbital electron populations 1.20724 0.90589 1.03219 1.02549 1.20287 0.96920 0.92498 1.00665 1.20918 0.94148 0.97062 1.01086 1.21064 0.94238 0.97840 1.01412 1.20892 0.99533 0.91565 1.01151 1.20163 0.93110 0.95573 1.01204 1.20477 0.99392 0.93827 0.97683 1.21701 0.99175 0.89236 0.95708 1.58622 1.25069 1.29541 1.24587 1.18455 0.89391 0.85814 0.99853 1.86031 1.74228 1.34080 1.30674 1.23049 0.98620 0.96084 0.82714 1.21482 0.99157 0.92406 1.00615 1.19508 0.96540 0.96504 0.92147 1.21086 1.35323 1.04164 0.95089 0.90830 1.25010 0.94591 0.94693 0.99111 1.69908 1.38991 1.14663 1.30621 0.86795 0.79332 0.78576 0.84686 1.20289 1.21321 1.19045 0.91215 0.91696 0.90423 0.85935 0.86098 0.86109 0.91602 0.89477 0.90222 0.96053 0.84554 0.85130 0.93428 0.93520 0.91874 0.91560 0.96479 0.97004 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.79 36.00 0.35 -1.01 16 2 C -0.10 -1.35 5.89 -104.47 -0.62 -1.96 16 3 C -0.11 -1.25 9.70 -39.60 -0.38 -1.63 16 4 C -0.13 -1.30 10.04 -39.56 -0.40 -1.69 16 5 C -0.11 -1.24 9.68 -39.60 -0.38 -1.62 16 6 C -0.10 -1.29 5.15 -104.47 -0.54 -1.83 16 7 C -0.08 -0.95 5.33 -27.88 -0.15 -1.10 16 8 C 0.07 0.86 6.77 -3.83 -0.03 0.83 16 9 N -0.85 -9.30 9.62 -10.37 -0.10 -9.40 16 10 C 0.11 1.60 5.67 -39.22 -0.22 1.37 16 11 O -0.33 -5.55 8.38 -19.44 -0.16 -5.72 16 12 C 0.07 1.20 5.73 37.16 0.21 1.42 16 13 C -0.10 -2.04 5.52 -26.73 -0.15 -2.19 16 14 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 15 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 16 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 19 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.08 1.03 7.53 -51.93 -0.39 0.63 16 26 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 27 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 30 H 0.09 1.30 6.43 -51.93 -0.33 0.96 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.34 3.14 9.08 -39.29 -0.36 2.79 16 34 H 0.34 3.04 8.99 -39.29 -0.35 2.69 16 35 H 0.05 0.81 7.18 -51.93 -0.37 0.44 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -31.77 338.06 -8.71 -40.48 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.80 Total: 2.95 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -2.84 Total: -23.24 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.67 Total: -36.78 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.16 Total: -5.72 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.77 -8.71 -40.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159929542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.012 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds