Wall clock time and date at job start Mon Mar 30 2020 06:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38173 * 120.02800 * 2 1 4 4 C 1.38241 * 120.05599 * 180.30159 * 3 2 1 5 5 C 1.38291 * 120.11180 * 359.44059 * 4 3 2 6 6 C 1.38121 * 120.05218 * 0.25948 * 5 4 3 7 7 C 1.50707 * 120.02446 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47232 * 265.00129 * 7 6 5 9 9 N 1.46896 * 109.46833 * 180.02562 * 8 7 6 10 10 C 1.38706 * 120.03199 * 179.72372 * 2 1 3 11 11 O 1.35905 * 120.05377 * 0.02562 * 10 2 1 12 12 C 1.42899 * 116.99825 * 269.98079 * 11 10 2 13 13 C 1.53003 * 109.47057 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.46844 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46689 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00207 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00049 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00505 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99920 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47246 * 90.00276 * 19 17 15 21 21 H 1.48498 * 109.47235 * 210.00320 * 19 17 15 22 22 H 1.48502 * 109.46947 * 330.00223 * 19 17 15 23 23 H 1.08999 * 109.46944 * 270.27606 * 1 2 3 24 24 H 1.09000 * 109.47353 * 30.27539 * 1 2 3 25 25 H 1.08997 * 109.47139 * 150.27990 * 1 2 3 26 26 H 1.08001 * 119.97107 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.94762 * 179.72634 * 4 3 2 28 28 H 1.07998 * 119.97202 * 180.27812 * 5 4 3 29 29 H 1.08998 * 109.46954 * 25.00530 * 7 6 5 30 30 H 1.09004 * 109.46731 * 144.99852 * 7 6 5 31 31 H 1.09001 * 109.46757 * 300.00150 * 8 7 6 32 32 H 1.08998 * 109.46944 * 59.99789 * 8 7 6 33 33 H 1.00900 * 110.99933 * 179.97438 * 9 8 7 34 34 H 1.00900 * 111.00363 * 303.95438 * 9 8 7 35 35 H 1.08997 * 109.47071 * 299.99544 * 12 11 10 36 36 H 1.09000 * 109.47725 * 59.99925 * 12 11 10 37 37 H 1.08997 * 109.46765 * 299.99679 * 13 12 11 38 38 H 1.08998 * 109.47475 * 59.99953 * 13 12 11 39 39 H 1.08997 * 109.47127 * 299.99395 * 14 13 12 40 40 H 1.08995 * 109.47481 * 60.00132 * 14 13 12 41 41 H 0.96998 * 120.00739 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0063 5 6 4.2752 0.0010 -0.0009 6 6 3.5887 -1.1974 0.0053 7 6 4.3461 -2.5003 0.0106 8 6 4.4923 -3.0111 -1.4242 9 7 5.2300 -4.2814 -1.4189 10 6 2.2012 -1.2008 0.0058 11 8 1.5234 -2.3788 0.0109 12 6 1.1998 -2.9354 1.2866 13 6 0.4439 -4.2514 1.0920 14 6 0.0969 -4.8470 2.4579 15 6 -0.6471 -6.1435 2.2661 16 1 -0.8522 -6.5061 1.2697 17 6 -1.0668 -6.8662 3.3627 18 7 -1.7165 -7.9973 3.1954 19 14 -0.7126 -6.2387 5.0861 20 1 -1.8326 -5.3747 5.5382 21 1 -0.5707 -7.3904 6.0128 22 1 0.5470 -5.4523 5.0774 23 1 -0.3633 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6584 2.1316 0.0004 27 1 4.1195 2.1330 -0.0108 28 1 5.3552 0.0042 -0.0013 29 1 5.3343 -2.3444 0.4432 30 1 3.8014 -3.2347 0.6041 31 1 3.5040 -3.1670 -1.8568 32 1 5.0368 -2.2767 -2.0176 33 1 5.3394 -4.6398 -2.3557 34 1 6.1247 -4.1781 -0.9641 35 1 2.1172 -3.1230 1.8445 36 1 0.5744 -2.2353 1.8406 37 1 -0.4735 -4.0642 0.5339 38 1 1.0696 -4.9514 0.5383 39 1 1.0140 -5.0341 3.0163 40 1 -0.5291 -4.1470 3.0112 41 1 -2.0114 -8.5060 3.9668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159929542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:18 Heat of formation + Delta-G solvation = -60.649256 kcal Electronic energy + Delta-G solvation = -19666.070107 eV Core-core repulsion = 16737.192530 eV Total energy + Delta-G solvation = -2928.877577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25020 -38.45177 -36.63485 -35.93026 -33.90241 -33.76779 -31.80634 -29.48938 -28.17430 -27.62947 -24.83161 -23.70984 -22.55458 -22.00752 -21.52301 -19.02321 -18.51658 -17.67881 -16.96055 -16.44368 -16.24077 -16.03041 -16.00124 -15.48843 -14.83968 -14.72327 -14.65588 -14.31413 -14.14670 -13.71711 -13.64345 -13.37261 -13.16139 -12.88536 -12.70926 -12.49232 -12.24466 -12.16710 -12.04773 -11.84693 -11.67342 -11.62822 -11.33853 -10.77547 -10.70826 -9.65353 -9.54639 -9.42399 -8.29924 -6.35217 0.24555 0.36867 1.35786 1.38278 1.50243 2.36049 2.45554 2.98722 3.04919 3.53229 3.81546 4.00018 4.04903 4.08734 4.19926 4.24414 4.28326 4.40305 4.44495 4.47853 4.54349 4.62992 4.70434 4.74733 4.79547 4.84578 4.93489 4.99817 5.07906 5.17230 5.30653 5.42429 5.50245 5.53115 5.53645 5.62110 5.66084 5.90804 6.21968 6.26712 6.60680 6.65482 6.73448 7.29102 8.87157 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.004675 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.264535 B = 5988.329161 C = 6811.605863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.117 4.117 3 C -0.115 4.115 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.073 4.073 8 C 0.079 3.921 9 N -0.862 5.862 10 C 0.071 3.929 11 O -0.346 6.346 12 C 0.083 3.917 13 C -0.090 4.090 14 C -0.004 4.004 15 C -0.536 4.536 16 H 0.029 0.971 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.953 3.047 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.246 1.246 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.149 0.851 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.351 0.649 34 H 0.349 0.651 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.023 0.977 40 H 0.025 0.975 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.925 21.801 -6.288 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.118 4.118 3 C -0.133 4.133 4 C -0.136 4.136 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.110 4.110 8 C -0.052 4.052 9 N -0.394 5.394 10 C 0.028 3.972 11 O -0.264 6.264 12 C 0.009 3.991 13 C -0.128 4.128 14 C -0.042 4.042 15 C -0.574 4.574 16 H 0.048 0.952 17 C -0.192 4.192 18 N -0.592 5.592 19 Si 0.775 3.225 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.169 1.169 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.074 0.926 26 H 0.167 0.833 27 H 0.173 0.827 28 H 0.165 0.835 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.170 21.268 -5.930 26.235 hybrid contribution 0.319 -0.073 0.108 0.344 sum 14.489 21.195 -5.822 26.326 Atomic orbital electron populations 1.20717 0.90376 1.03238 1.02607 1.20497 0.97407 0.92832 1.01042 1.21264 0.94849 0.97155 1.00034 1.21506 0.94087 0.98945 0.99089 1.21223 1.00914 0.90916 1.00114 1.20295 0.92604 0.96581 1.01590 1.20432 0.99953 0.93125 0.97513 1.21553 0.98060 0.90003 0.95543 1.58578 1.25914 1.29343 1.25559 1.18780 0.90280 0.85374 1.02790 1.85994 1.74886 1.35594 1.29880 1.22679 0.98352 0.94483 0.83603 1.21243 0.99000 0.94036 0.98506 1.19408 0.96148 0.94483 0.94146 1.21417 1.36093 1.06400 0.93455 0.95223 1.26033 0.94118 0.94707 1.04321 1.70066 1.40402 1.16343 1.32345 0.85627 0.80316 0.78429 0.78115 1.18809 1.20759 1.16918 0.91141 0.89399 0.92643 0.83327 0.82708 0.83508 0.89474 0.92491 0.93113 0.94301 0.83569 0.83752 0.93101 0.92616 0.92780 0.93150 0.95854 0.95688 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 9.79 71.24 0.70 -1.89 16 2 C -0.12 -2.89 5.89 -19.77 -0.12 -3.01 16 3 C -0.12 -2.15 9.70 22.25 0.22 -1.93 16 4 C -0.12 -1.92 10.04 22.28 0.22 -1.70 16 5 C -0.11 -2.11 9.68 22.25 0.22 -1.89 16 6 C -0.11 -2.70 5.15 -19.77 -0.10 -2.80 16 7 C -0.07 -1.75 5.33 29.85 0.16 -1.60 16 8 C 0.08 1.85 6.77 86.30 0.58 2.43 16 9 N -0.86 -18.47 9.62 -186.73 -1.80 -20.27 16 10 C 0.07 2.05 5.67 22.50 0.13 2.18 16 11 O -0.35 -11.85 8.38 -92.48 -0.77 -12.63 16 12 C 0.08 2.92 5.73 71.98 0.41 3.33 16 13 C -0.09 -3.85 5.52 30.60 0.17 -3.68 16 14 C 0.00 -0.21 4.04 29.85 0.12 -0.09 16 15 C -0.54 -32.12 9.66 25.60 0.25 -31.87 16 16 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 17 C 0.00 0.30 5.47 84.65 0.46 0.76 16 18 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 19 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 25 H 0.05 1.49 7.53 -2.39 -0.02 1.48 16 26 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 27 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 28 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.09 1.67 8.05 -2.39 -0.02 1.65 16 30 H 0.06 1.72 6.43 -2.38 -0.02 1.70 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.35 6.29 9.08 -89.69 -0.81 5.48 16 34 H 0.35 5.88 8.99 -89.69 -0.81 5.07 16 35 H 0.05 1.74 7.18 -2.39 -0.02 1.72 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 40 H 0.02 1.15 7.57 -2.39 -0.02 1.13 16 41 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -71.10 338.06 2.37 -68.74 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.66 Total: 19.95 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.42 Total: -41.76 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -1.50 Total: -80.95 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.77 Total: -12.63 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -71.10 2.37 -68.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159929542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.087 kcal (2) G-P(sol) polarization free energy of solvation -71.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds