Wall clock time and date at job start Mon Mar 30 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47031 * 2 1 4 4 C 1.52992 * 109.47759 * 120.00106 * 2 1 3 5 5 C 1.53002 * 109.47209 * 300.00309 * 4 2 1 6 6 O 1.42896 * 109.47740 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.46935 * 59.99835 * 4 2 1 8 8 N 1.46505 * 109.47219 * 184.99950 * 7 4 2 9 9 C 1.38858 * 119.99975 * 179.97438 * 8 7 4 10 10 C 1.39571 * 119.84229 * 359.73114 * 9 8 7 11 11 C 1.36338 * 120.16030 * 179.71810 * 10 9 8 12 12 C 1.40890 * 119.83174 * 0.55004 * 11 10 9 13 13 C 1.41136 * 120.15166 * 179.69857 * 12 11 10 14 14 H 1.07999 * 120.00514 * 204.62603 * 13 12 11 15 15 C 1.39871 * 120.00249 * 24.62886 * 13 12 11 16 16 N 1.30903 * 119.99553 * 17.96096 * 15 13 12 17 17 Si 1.86799 * 120.00223 * 197.96407 * 15 13 12 18 18 H 1.48502 * 109.46850 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46827 * 119.99819 * 17 15 13 20 20 H 1.48499 * 109.47034 * 239.99619 * 17 15 13 21 21 C 1.40880 * 119.69400 * 359.72498 * 12 11 10 22 22 C 1.36341 * 119.83326 * 359.97438 * 21 12 11 23 23 H 1.08993 * 109.47735 * 59.99435 * 1 2 3 24 24 H 1.09005 * 109.46727 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46800 * 299.99602 * 1 2 3 26 26 H 1.09005 * 109.47100 * 240.00288 * 2 1 3 27 27 H 1.09003 * 109.47366 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47128 * 300.00197 * 3 2 1 29 29 H 1.08997 * 109.47003 * 60.00523 * 3 2 1 30 30 H 1.09003 * 109.46574 * 299.99290 * 5 4 2 31 31 H 1.09002 * 109.46975 * 179.97438 * 5 4 2 32 32 H 1.08998 * 109.47306 * 59.99263 * 5 4 2 33 33 H 0.96701 * 113.99762 * 300.00419 * 6 4 2 34 34 H 1.08995 * 109.47202 * 305.00546 * 7 4 2 35 35 H 1.09001 * 109.47031 * 65.00410 * 7 4 2 36 36 H 0.96997 * 119.99515 * 0.02562 * 8 7 4 37 37 H 1.07997 * 119.91667 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.08247 * 180.27510 * 11 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 40 40 H 1.07995 * 120.08156 * 179.97438 * 21 12 11 41 41 H 1.08003 * 119.91453 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.5301 -0.0001 2.4984 6 8 3.4691 -0.7217 1.2488 7 6 1.5301 -2.1637 1.2491 8 7 1.9178 -2.8188 2.5009 9 6 1.5635 -4.1415 2.7310 10 6 0.8330 -4.8421 1.7700 11 6 0.4865 -6.1428 1.9868 12 6 0.8577 -6.7759 3.1894 13 6 0.4971 -8.1202 3.4236 14 1 0.4115 -8.4880 4.4354 15 6 0.2506 -8.9762 2.3452 16 7 0.6812 -8.6630 1.1493 17 14 -0.6930 -10.5662 2.6115 18 1 -1.0659 -10.6865 4.0439 19 1 -1.9223 -10.5577 1.7783 20 1 0.1597 -11.7186 2.2239 21 6 1.5900 -6.0608 4.1574 22 6 1.9349 -4.7624 3.9245 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.8935 1.0276 2.4984 31 1 1.8932 -0.5142 3.3884 32 1 0.4402 0.0000 2.4985 33 1 3.8620 -1.1636 0.4837 34 1 0.4439 -2.1651 1.1596 35 1 1.9647 -2.7027 0.4073 36 1 2.4215 -2.3282 3.1692 37 1 0.5452 -4.3540 0.8507 38 1 -0.0748 -6.6851 1.2404 39 1 0.5106 -9.2568 0.4015 40 1 1.8774 -6.5398 5.0817 41 1 2.4959 -4.2128 4.6658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167758798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:13 Heat of formation + Delta-G solvation = -41.919315 kcal Electronic energy + Delta-G solvation = -19848.614615 eV Core-core repulsion = 16920.549229 eV Total energy + Delta-G solvation = -2928.065386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.44675 -37.64976 -34.68706 -34.39851 -32.84472 -30.06198 -29.44166 -28.38793 -27.52265 -26.10494 -24.16052 -22.58612 -21.00640 -19.88792 -19.42278 -17.18080 -16.65746 -16.53759 -15.35638 -14.99390 -14.76979 -14.37034 -14.20274 -13.76309 -13.15506 -12.93127 -12.71620 -12.62441 -12.49225 -12.21644 -11.98329 -11.89598 -11.65185 -11.59861 -11.38419 -11.13693 -11.01855 -10.98604 -10.76201 -10.43973 -10.38840 -9.73211 -9.65800 -9.26190 -9.19269 -8.48578 -7.46657 -6.61710 -6.34430 -4.00324 2.92443 3.12600 3.16700 3.22257 3.37503 4.06611 4.08282 4.37484 4.65239 4.75425 4.79368 4.85218 5.14057 5.18919 5.37152 5.50004 5.66273 5.73574 5.78880 5.83014 5.84604 5.90677 5.95262 6.00398 6.07166 6.20432 6.30632 6.35310 6.37188 6.96229 6.96863 7.23052 7.38796 7.58254 7.65640 7.72115 7.87977 8.18055 8.32780 8.53357 8.75326 8.84468 9.08834 9.18440 10.39799 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037716 B = 0.003908 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.205146 B = 7162.538400 C = 7539.408479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.126 3.874 5 C -0.139 4.139 6 O -0.556 6.556 7 C 0.114 3.886 8 N -0.754 5.754 9 C 0.094 3.906 10 C -0.166 4.166 11 C -0.124 4.124 12 C 0.073 3.927 13 C -0.467 4.467 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.809 5.809 17 Si 0.902 3.098 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.277 1.277 21 C -0.185 4.185 22 C -0.160 4.160 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.375 0.625 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.387 0.613 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.275 0.725 40 H 0.091 0.909 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 15.034 -3.605 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.137 4.137 3 C -0.200 4.200 4 C 0.085 3.915 5 C -0.196 4.196 6 O -0.361 6.361 7 C -0.012 4.012 8 N -0.391 5.391 9 C -0.003 4.003 10 C -0.188 4.188 11 C -0.144 4.144 12 C 0.070 3.930 13 C -0.498 4.498 14 H 0.091 0.909 15 C -0.140 4.140 16 N -0.436 5.436 17 Si 0.727 3.273 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.206 4.206 22 C -0.182 4.182 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.222 0.778 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.221 0.779 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.198 15.260 -3.450 15.646 hybrid contribution -0.109 -0.999 -0.404 1.083 sum 0.089 14.261 -3.854 14.773 Atomic orbital electron populations 1.21988 0.94488 1.02585 1.01984 1.21702 0.96776 0.97223 0.98042 1.21797 1.01519 0.95237 1.01448 1.21421 0.80926 0.93782 0.95345 1.21798 1.01045 1.00211 0.96537 1.86519 1.18887 1.80931 1.49784 1.21723 0.99343 0.91408 0.88761 1.43813 1.65313 1.10736 1.19247 1.17373 1.02945 0.84369 0.95623 1.20073 1.04980 0.95947 0.97784 1.20924 1.01788 0.92403 0.99285 1.17490 0.90901 0.93097 0.91502 1.19396 1.42203 0.94705 0.93533 0.90944 1.25789 0.93939 0.99571 0.94742 1.69870 1.35881 1.36992 1.00876 0.86376 0.79913 0.81427 0.79596 1.18639 1.19991 1.20305 1.20546 1.04662 0.94540 1.00805 1.19807 1.06235 0.96052 0.96102 0.92604 0.91807 0.92119 0.90985 0.92155 0.93037 0.92414 0.91940 0.91755 0.90894 0.77788 0.92459 0.93633 0.77915 0.89632 0.86450 0.91447 0.89084 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.50 37.16 0.32 -1.12 16 2 C -0.12 -1.15 2.46 -90.62 -0.22 -1.37 16 3 C -0.14 -1.26 8.69 37.16 0.32 -0.94 16 4 C 0.13 1.47 0.53 -90.62 -0.05 1.43 16 5 C -0.14 -1.58 7.91 37.16 0.29 -1.29 16 6 O -0.56 -6.80 12.25 -35.23 -0.43 -7.23 16 7 C 0.11 1.68 3.81 -4.04 -0.02 1.66 16 8 N -0.75 -13.41 5.33 -58.50 -0.31 -13.72 16 9 C 0.09 2.09 6.67 -83.69 -0.56 1.53 16 10 C -0.17 -3.93 9.23 -39.77 -0.37 -4.30 16 11 C -0.12 -3.30 8.64 -39.26 -0.34 -3.63 16 12 C 0.07 2.00 5.57 -106.79 -0.60 1.41 16 13 C -0.47 -12.87 9.03 -37.87 -0.34 -13.21 16 14 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 15 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 16 N -0.81 -21.70 10.96 55.54 0.61 -21.09 16 17 Si 0.90 19.41 29.60 -169.99 -5.03 14.38 16 18 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 C -0.19 -4.68 9.74 -39.27 -0.38 -5.06 16 22 C -0.16 -3.68 9.82 -39.77 -0.39 -4.07 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.66 6.32 -51.93 -0.33 0.33 16 25 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 30 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 31 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 32 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 33 H 0.37 3.65 9.04 45.56 0.41 4.07 16 34 H 0.06 0.86 5.95 -51.93 -0.31 0.56 16 35 H 0.05 0.71 7.94 -51.93 -0.41 0.29 16 36 H 0.39 6.50 6.98 -40.82 -0.29 6.22 16 37 H 0.09 1.85 6.68 -52.49 -0.35 1.50 16 38 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 39 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 40 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 321.00 15.07 4.84 4.84 Total: -1.00 -29.04 321.00 -8.08 -37.12 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.33 Total: 12.83 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -2.42 Total: -27.13 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.30 Total: -34.81 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.43 Total: -7.23 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.04 -8.08 -37.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167758798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.802 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds