Wall clock time and date at job start Mon Mar 30 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47031 * 2 1 4 4 C 1.52992 * 109.47759 * 120.00106 * 2 1 3 5 5 C 1.53002 * 109.47209 * 300.00309 * 4 2 1 6 6 O 1.42896 * 109.47740 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.46935 * 59.99835 * 4 2 1 8 8 N 1.46505 * 109.47219 * 184.99950 * 7 4 2 9 9 C 1.38858 * 119.99975 * 179.97438 * 8 7 4 10 10 C 1.39571 * 119.84229 * 359.73114 * 9 8 7 11 11 C 1.36338 * 120.16030 * 179.71810 * 10 9 8 12 12 C 1.40890 * 119.83174 * 0.55004 * 11 10 9 13 13 C 1.41136 * 120.15166 * 179.69857 * 12 11 10 14 14 H 1.07999 * 120.00514 * 204.62603 * 13 12 11 15 15 C 1.39871 * 120.00249 * 24.62886 * 13 12 11 16 16 N 1.30903 * 119.99553 * 17.96096 * 15 13 12 17 17 Si 1.86799 * 120.00223 * 197.96407 * 15 13 12 18 18 H 1.48502 * 109.46850 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46827 * 119.99819 * 17 15 13 20 20 H 1.48499 * 109.47034 * 239.99619 * 17 15 13 21 21 C 1.40880 * 119.69400 * 359.72498 * 12 11 10 22 22 C 1.36341 * 119.83326 * 359.97438 * 21 12 11 23 23 H 1.08993 * 109.47735 * 59.99435 * 1 2 3 24 24 H 1.09005 * 109.46727 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46800 * 299.99602 * 1 2 3 26 26 H 1.09005 * 109.47100 * 240.00288 * 2 1 3 27 27 H 1.09003 * 109.47366 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47128 * 300.00197 * 3 2 1 29 29 H 1.08997 * 109.47003 * 60.00523 * 3 2 1 30 30 H 1.09003 * 109.46574 * 299.99290 * 5 4 2 31 31 H 1.09002 * 109.46975 * 179.97438 * 5 4 2 32 32 H 1.08998 * 109.47306 * 59.99263 * 5 4 2 33 33 H 0.96701 * 113.99762 * 300.00419 * 6 4 2 34 34 H 1.08995 * 109.47202 * 305.00546 * 7 4 2 35 35 H 1.09001 * 109.47031 * 65.00410 * 7 4 2 36 36 H 0.96997 * 119.99515 * 0.02562 * 8 7 4 37 37 H 1.07997 * 119.91667 * 359.97438 * 10 9 8 38 38 H 1.07997 * 120.08247 * 180.27510 * 11 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 40 40 H 1.07995 * 120.08156 * 179.97438 * 21 12 11 41 41 H 1.08003 * 119.91453 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.5301 -0.0001 2.4984 6 8 3.4691 -0.7217 1.2488 7 6 1.5301 -2.1637 1.2491 8 7 1.9178 -2.8188 2.5009 9 6 1.5635 -4.1415 2.7310 10 6 0.8330 -4.8421 1.7700 11 6 0.4865 -6.1428 1.9868 12 6 0.8577 -6.7759 3.1894 13 6 0.4971 -8.1202 3.4236 14 1 0.4115 -8.4880 4.4354 15 6 0.2506 -8.9762 2.3452 16 7 0.6812 -8.6630 1.1493 17 14 -0.6930 -10.5662 2.6115 18 1 -1.0659 -10.6865 4.0439 19 1 -1.9223 -10.5577 1.7783 20 1 0.1597 -11.7186 2.2239 21 6 1.5900 -6.0608 4.1574 22 6 1.9349 -4.7624 3.9245 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.8935 1.0276 2.4984 31 1 1.8932 -0.5142 3.3884 32 1 0.4402 0.0000 2.4985 33 1 3.8620 -1.1636 0.4837 34 1 0.4439 -2.1651 1.1596 35 1 1.9647 -2.7027 0.4073 36 1 2.4215 -2.3282 3.1692 37 1 0.5452 -4.3540 0.8507 38 1 -0.0748 -6.6851 1.2404 39 1 0.5106 -9.2568 0.4015 40 1 1.8774 -6.5398 5.0817 41 1 2.4959 -4.2128 4.6658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167758798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:13 Heat of formation + Delta-G solvation = -59.987063 kcal Electronic energy + Delta-G solvation = -19849.398092 eV Core-core repulsion = 16920.549229 eV Total energy + Delta-G solvation = -2928.848862 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53646 -39.37716 -36.37147 -35.26148 -34.61053 -31.40838 -31.35823 -29.84010 -28.45551 -27.29323 -25.85410 -23.78377 -22.82308 -21.63415 -20.34074 -19.15404 -18.09492 -17.59603 -16.83834 -16.54202 -15.95646 -15.71421 -15.48112 -15.23383 -14.44295 -14.40783 -13.99667 -13.88703 -13.84537 -13.60776 -13.46591 -13.05244 -12.93827 -12.79732 -12.73687 -12.51352 -12.44531 -12.26939 -12.11226 -11.74851 -11.56600 -11.31951 -11.13697 -11.06715 -10.68598 -10.27371 -9.41118 -8.54867 -8.15057 -6.00259 1.10218 1.17997 1.40398 1.54747 1.58232 2.27888 2.82348 2.86328 3.38137 3.72083 3.81907 3.84901 3.92676 4.28044 4.33407 4.43577 4.49431 4.57328 4.69439 4.81707 4.85338 4.93589 4.97669 5.02232 5.04988 5.05680 5.13846 5.18766 5.24489 5.28308 5.45878 5.47137 5.54194 5.69096 5.79800 5.96302 6.18876 6.39378 6.67543 6.80876 6.88227 7.08732 7.15119 7.31438 8.48690 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037716 B = 0.003908 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.205146 B = 7162.538400 C = 7539.408479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.139 4.139 4 C 0.135 3.865 5 C -0.141 4.141 6 O -0.566 6.566 7 C 0.109 3.891 8 N -0.744 5.744 9 C 0.113 3.887 10 C -0.175 4.175 11 C -0.142 4.142 12 C 0.035 3.965 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.032 3.968 16 N -0.842 5.842 17 Si 0.977 3.023 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.269 1.269 21 C -0.195 4.195 22 C -0.168 4.168 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.385 0.615 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.395 0.605 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.282 0.718 40 H 0.096 0.904 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 16.556 -3.943 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.133 4.133 3 C -0.196 4.196 4 C 0.094 3.906 5 C -0.198 4.198 6 O -0.373 6.373 7 C -0.016 4.016 8 N -0.379 5.379 9 C 0.013 3.987 10 C -0.197 4.197 11 C -0.162 4.162 12 C 0.032 3.968 13 C -0.538 4.538 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.470 5.470 17 Si 0.798 3.202 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.194 1.194 21 C -0.215 4.215 22 C -0.190 4.190 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.234 0.766 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.230 0.770 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.216 16.831 -3.795 17.255 hybrid contribution -0.028 -1.280 -0.312 1.318 sum 0.189 15.551 -4.108 16.085 Atomic orbital electron populations 1.21995 0.94173 1.02040 1.02887 1.21663 0.96964 0.97684 0.96960 1.21765 1.01238 0.94439 1.02172 1.21348 0.80787 0.91773 0.96654 1.21831 1.01486 1.00736 0.95702 1.86501 1.19046 1.81079 1.50700 1.21942 0.99501 0.93217 0.86961 1.43873 1.64426 1.09090 1.20542 1.17483 1.00701 0.85906 0.94587 1.20217 1.05274 0.95235 0.98973 1.20860 1.02777 0.93581 0.99028 1.17810 0.92520 0.93826 0.92672 1.19616 1.44649 0.95610 0.93889 0.91490 1.26609 0.94230 1.02991 0.94141 1.69928 1.36758 1.38618 1.01731 0.85248 0.78507 0.76928 0.79483 1.18473 1.19070 1.19363 1.20749 1.04452 0.95590 1.00676 1.20091 1.06281 0.95550 0.97104 0.91310 0.93027 0.91709 0.90620 0.92539 0.91814 0.92233 0.90693 0.92968 0.90288 0.76593 0.92402 0.94087 0.76973 0.87837 0.88282 0.90777 0.88583 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.50 71.98 0.61 -1.91 16 2 C -0.11 -1.92 2.46 -10.80 -0.03 -1.94 16 3 C -0.14 -2.05 8.69 71.98 0.63 -1.42 16 4 C 0.14 2.85 0.53 -10.80 -0.01 2.85 16 5 C -0.14 -2.87 7.91 71.98 0.57 -2.30 16 6 O -0.57 -12.52 12.25 -148.98 -1.83 -14.34 16 7 C 0.11 3.01 3.81 86.38 0.33 3.34 16 8 N -0.74 -25.03 5.33 -338.98 -1.81 -26.83 16 9 C 0.11 4.89 6.67 38.67 0.26 5.15 16 10 C -0.17 -8.29 9.23 22.15 0.20 -8.09 16 11 C -0.14 -7.79 8.64 22.48 0.19 -7.59 16 12 C 0.03 1.96 5.57 -21.27 -0.12 1.84 16 13 C -0.51 -28.88 9.03 23.38 0.21 -28.67 16 14 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 15 C 0.03 1.71 5.13 85.23 0.44 2.14 16 16 N -0.84 -46.38 10.96 21.82 0.24 -46.14 16 17 Si 0.98 40.47 29.60 68.60 2.03 42.50 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 21 C -0.19 -9.96 9.74 22.47 0.22 -9.74 16 22 C -0.17 -7.59 9.82 22.15 0.22 -7.37 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.97 6.32 -2.38 -0.02 0.96 16 25 H 0.06 1.01 6.43 -2.39 -0.02 0.99 16 26 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.06 0.89 7.68 -2.39 -0.02 0.87 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.86 6.43 -2.39 -0.02 0.85 16 30 H 0.07 1.35 6.43 -2.39 -0.02 1.34 16 31 H 0.05 1.19 6.57 -2.39 -0.02 1.17 16 32 H 0.08 1.51 6.43 -2.39 -0.02 1.49 16 33 H 0.39 6.66 9.04 -74.06 -0.67 5.99 16 34 H 0.06 1.64 5.95 -2.39 -0.01 1.63 16 35 H 0.04 1.20 7.94 -2.39 -0.02 1.18 16 36 H 0.39 12.34 6.98 -92.71 -0.65 11.69 16 37 H 0.10 4.43 6.68 -2.91 -0.02 4.41 16 38 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 39 H 0.28 14.07 8.30 -92.70 -0.77 13.30 16 40 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -63.11 321.00 2.09 -61.02 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.28 Total: 37.53 kcal Atomic # 6 Polarization: -57.45 SS G_CDS: 3.73 Total: -53.73 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.57 Total: -72.98 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -1.83 Total: -14.34 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -63.11 2.09 -61.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167758798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.030 kcal (2) G-P(sol) polarization free energy of solvation -63.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds