Wall clock time and date at job start Mon Mar 30 2020 07:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47101 * 2 1 4 4 C 1.53006 * 109.47200 * 59.99868 * 3 2 1 5 5 O 1.42898 * 109.47260 * 300.00234 * 3 2 1 6 6 C 1.52998 * 109.47487 * 179.97438 * 3 2 1 7 7 N 1.46502 * 109.47482 * 184.99868 * 6 3 2 8 8 C 1.46499 * 119.99658 * 90.00117 * 7 6 3 9 9 C 1.50701 * 109.46992 * 90.00121 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.39668 * 120.00128 * 270.00519 * 7 6 3 18 18 C 1.38914 * 120.07575 * 359.72048 * 17 7 6 19 19 C 1.38107 * 119.92457 * 179.77396 * 18 17 7 20 20 C 1.38282 * 120.07550 * 0.50482 * 19 18 17 21 21 C 1.38292 * 120.15077 * 359.74621 * 20 19 18 22 22 C 1.38106 * 120.07016 * 0.02562 * 21 20 19 23 23 H 1.09003 * 109.46880 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47521 * 300.00314 * 1 2 3 25 25 H 1.08996 * 109.47170 * 60.00329 * 1 2 3 26 26 H 1.09007 * 109.47311 * 240.00211 * 2 1 3 27 27 H 1.08996 * 109.47170 * 119.99671 * 2 1 3 28 28 H 1.08992 * 109.47099 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.46801 * 300.00284 * 4 3 2 30 30 H 1.09000 * 109.46747 * 60.00130 * 4 3 2 31 31 H 0.96705 * 113.99568 * 299.99627 * 5 3 2 32 32 H 1.08998 * 109.46784 * 65.00142 * 6 3 2 33 33 H 1.08994 * 109.46982 * 305.00454 * 6 3 2 34 34 H 1.09002 * 109.47391 * 330.00112 * 8 7 6 35 35 H 1.09001 * 109.46813 * 210.00168 * 8 7 6 36 36 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 37 37 H 1.07998 * 120.04036 * 0.02562 * 18 17 7 38 38 H 1.08001 * 119.96373 * 180.25786 * 19 18 17 39 39 H 1.08001 * 119.92698 * 179.73240 * 20 19 18 40 40 H 1.07997 * 119.96554 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.03710 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2493 5 8 1.5636 2.1162 -1.1667 6 6 3.5699 1.4426 0.0006 7 7 4.0582 2.8186 0.1210 8 6 4.3018 3.3961 1.4451 9 6 5.7250 3.1224 1.8584 10 1 6.3823 2.5735 1.2004 11 6 6.1881 3.5736 3.0762 12 7 5.3877 4.2424 3.8773 13 14 7.9523 3.2349 3.5882 14 1 8.8798 3.8464 2.6028 15 1 8.1992 3.8202 4.9305 16 1 8.1802 1.7683 3.6387 17 6 4.2914 3.5798 -1.0266 18 6 4.0663 3.0318 -2.2831 19 6 4.2935 3.7888 -3.4156 20 6 4.7543 5.0874 -3.3002 21 6 4.9844 5.6344 -2.0511 22 6 4.7548 4.8845 -0.9143 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8928 3.1915 1.2490 29 1 0.4399 2.1637 1.2492 30 1 1.8933 1.6499 2.1392 31 1 1.8490 1.7126 -1.9979 32 1 3.9336 1.0082 -0.9305 33 1 3.9329 0.8533 0.8426 34 1 3.6207 2.9474 2.1682 35 1 4.1348 4.4727 1.4082 36 1 5.7134 4.5595 4.7342 37 1 3.7103 2.0162 -2.3741 38 1 4.1147 3.3647 -4.3927 39 1 4.9353 5.6758 -4.1876 40 1 5.3447 6.6488 -1.9644 41 1 4.9350 5.3121 0.0610 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167813601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:15 Heat of formation + Delta-G solvation = -25.818191 kcal Electronic energy + Delta-G solvation = -20787.532049 eV Core-core repulsion = 17860.164861 eV Total energy + Delta-G solvation = -2927.367189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.38540 -37.82311 -35.18040 -32.97447 -32.64980 -30.34768 -29.87023 -28.49949 -27.55414 -25.55273 -23.42157 -22.65193 -21.36849 -19.99262 -19.60357 -17.03739 -16.60127 -16.02408 -15.11393 -15.00100 -14.88884 -14.72721 -14.16313 -13.86189 -13.17775 -12.94856 -12.77260 -12.62406 -12.13347 -12.08575 -11.91949 -11.76845 -11.50206 -11.19144 -11.08177 -11.03828 -10.84784 -10.72671 -10.60256 -10.41902 -10.28115 -9.94985 -9.77188 -9.50385 -8.78800 -8.49185 -8.19995 -6.43192 -5.99938 -4.16978 2.17009 2.40444 3.27032 3.31825 3.35009 4.05688 4.39271 4.55812 4.68998 4.99109 5.08414 5.19787 5.21858 5.37215 5.55290 5.61014 5.67048 5.77691 5.81616 5.90983 5.96817 6.09194 6.16009 6.20028 6.24109 6.35922 6.37314 6.41014 6.46827 6.69408 6.75397 7.01413 7.13680 7.22760 7.31279 7.40833 7.67177 7.81242 7.98447 8.17373 8.31486 8.53608 8.92132 9.49677 10.95536 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013664 B = 0.008119 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.647216 B = 3448.052415 C = 4971.023831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.113 3.887 4 C -0.136 4.136 5 O -0.547 6.547 6 C 0.103 3.897 7 N -0.601 5.601 8 C 0.248 3.752 9 C -0.533 4.533 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.278 1.278 17 C 0.250 3.750 18 C -0.211 4.211 19 C -0.080 4.080 20 C -0.206 4.206 21 C -0.077 4.077 22 C -0.189 4.189 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.364 0.636 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 -5.570 -9.270 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C 0.071 3.929 4 C -0.193 4.193 5 O -0.353 6.353 6 C -0.023 4.023 7 N -0.306 5.306 8 C 0.128 3.872 9 C -0.572 4.572 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.143 3.857 18 C -0.234 4.234 19 C -0.099 4.099 20 C -0.227 4.227 21 C -0.096 4.096 22 C -0.212 4.212 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.211 0.789 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.727 -5.203 -8.400 11.953 hybrid contribution 1.364 -0.608 0.021 1.494 sum -5.363 -5.812 -8.379 11.521 Atomic orbital electron populations 1.21706 0.95336 1.00741 1.02559 1.22165 0.97021 0.97179 1.02317 1.21832 0.93395 0.90599 0.87119 1.21827 1.00452 1.02312 0.94732 1.86633 1.76659 1.56982 1.14984 1.21938 0.92675 0.85437 1.02206 1.46916 1.67516 1.11033 1.05128 1.19377 0.95979 0.94461 0.77362 1.21582 0.97259 1.35958 1.02389 0.92423 1.24941 0.97728 0.94971 0.96329 1.69916 1.35661 1.37269 1.10476 0.86613 0.84952 0.78534 0.77677 1.20149 1.21205 1.20313 1.17830 0.90657 0.90553 0.86623 1.20428 1.11578 0.99928 0.91423 1.20641 0.98085 0.94223 0.96936 1.20617 1.08886 0.96498 0.96688 1.20796 0.97895 0.98618 0.92333 1.20887 1.06917 0.93992 0.99375 0.93430 0.92388 0.92286 0.92151 0.91099 0.90743 0.92761 0.91388 0.78888 0.91880 0.90042 0.94502 0.94872 0.92622 0.87568 0.87611 0.87842 0.87304 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.41 37.16 0.35 -1.29 16 2 C -0.15 -1.77 5.17 -26.73 -0.14 -1.91 16 3 C 0.11 1.67 0.86 -90.62 -0.08 1.59 16 4 C -0.14 -2.25 7.12 37.16 0.26 -1.99 16 5 O -0.55 -8.32 10.91 -35.23 -0.38 -8.71 16 6 C 0.10 1.74 4.59 -4.04 -0.02 1.72 16 7 N -0.60 -12.37 2.17 -173.12 -0.38 -12.74 16 8 C 0.25 6.03 3.69 -5.19 -0.02 6.01 16 9 C -0.53 -14.32 9.39 -34.44 -0.32 -14.65 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 13 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.25 5.05 6.30 -83.79 -0.53 4.52 16 18 C -0.21 -3.63 7.94 -39.38 -0.31 -3.94 16 19 C -0.08 -1.28 10.04 -39.61 -0.40 -1.67 16 20 C -0.21 -3.39 10.04 -39.54 -0.40 -3.79 16 21 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 22 C -0.19 -3.95 9.21 -39.38 -0.36 -4.31 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 25 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 26 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.45 6.12 -51.93 -0.32 1.14 16 29 H 0.05 0.82 6.43 -51.93 -0.33 0.48 16 30 H 0.07 1.11 7.83 -51.93 -0.41 0.71 16 31 H 0.36 4.50 7.32 45.56 0.33 4.83 16 32 H 0.06 0.96 6.19 -51.93 -0.32 0.64 16 33 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 34 H 0.04 0.93 6.03 -51.93 -0.31 0.61 16 35 H 0.03 0.88 6.20 -51.93 -0.32 0.56 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.11 1.58 4.67 -52.49 -0.24 1.33 16 38 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.10 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.13 2.95 6.14 -52.48 -0.32 2.63 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -28.84 320.29 -8.15 -37.00 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.48 Total: 7.94 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -2.46 Total: -19.88 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.36 Total: -37.35 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.38 Total: -8.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.84 -8.15 -37.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167813601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.179 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds