Wall clock time and date at job start Mon Mar 30 2020 07:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47101 * 2 1 4 4 C 1.53006 * 109.47200 * 59.99868 * 3 2 1 5 5 O 1.42898 * 109.47260 * 300.00234 * 3 2 1 6 6 C 1.52998 * 109.47487 * 179.97438 * 3 2 1 7 7 N 1.46502 * 109.47482 * 184.99868 * 6 3 2 8 8 C 1.46499 * 119.99658 * 90.00117 * 7 6 3 9 9 C 1.50701 * 109.46992 * 90.00121 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.39668 * 120.00128 * 270.00519 * 7 6 3 18 18 C 1.38914 * 120.07575 * 359.72048 * 17 7 6 19 19 C 1.38107 * 119.92457 * 179.77396 * 18 17 7 20 20 C 1.38282 * 120.07550 * 0.50482 * 19 18 17 21 21 C 1.38292 * 120.15077 * 359.74621 * 20 19 18 22 22 C 1.38106 * 120.07016 * 0.02562 * 21 20 19 23 23 H 1.09003 * 109.46880 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47521 * 300.00314 * 1 2 3 25 25 H 1.08996 * 109.47170 * 60.00329 * 1 2 3 26 26 H 1.09007 * 109.47311 * 240.00211 * 2 1 3 27 27 H 1.08996 * 109.47170 * 119.99671 * 2 1 3 28 28 H 1.08992 * 109.47099 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.46801 * 300.00284 * 4 3 2 30 30 H 1.09000 * 109.46747 * 60.00130 * 4 3 2 31 31 H 0.96705 * 113.99568 * 299.99627 * 5 3 2 32 32 H 1.08998 * 109.46784 * 65.00142 * 6 3 2 33 33 H 1.08994 * 109.46982 * 305.00454 * 6 3 2 34 34 H 1.09002 * 109.47391 * 330.00112 * 8 7 6 35 35 H 1.09001 * 109.46813 * 210.00168 * 8 7 6 36 36 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 37 37 H 1.07998 * 120.04036 * 0.02562 * 18 17 7 38 38 H 1.08001 * 119.96373 * 180.25786 * 19 18 17 39 39 H 1.08001 * 119.92698 * 179.73240 * 20 19 18 40 40 H 1.07997 * 119.96554 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.03710 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2493 5 8 1.5636 2.1162 -1.1667 6 6 3.5699 1.4426 0.0006 7 7 4.0582 2.8186 0.1210 8 6 4.3018 3.3961 1.4451 9 6 5.7250 3.1224 1.8584 10 1 6.3823 2.5735 1.2004 11 6 6.1881 3.5736 3.0762 12 7 5.3877 4.2424 3.8773 13 14 7.9523 3.2349 3.5882 14 1 8.8798 3.8464 2.6028 15 1 8.1992 3.8202 4.9305 16 1 8.1802 1.7683 3.6387 17 6 4.2914 3.5798 -1.0266 18 6 4.0663 3.0318 -2.2831 19 6 4.2935 3.7888 -3.4156 20 6 4.7543 5.0874 -3.3002 21 6 4.9844 5.6344 -2.0511 22 6 4.7548 4.8845 -0.9143 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8928 3.1915 1.2490 29 1 0.4399 2.1637 1.2492 30 1 1.8933 1.6499 2.1392 31 1 1.8490 1.7126 -1.9979 32 1 3.9336 1.0082 -0.9305 33 1 3.9329 0.8533 0.8426 34 1 3.6207 2.9474 2.1682 35 1 4.1348 4.4727 1.4082 36 1 5.7134 4.5595 4.7342 37 1 3.7103 2.0162 -2.3741 38 1 4.1147 3.3647 -4.3927 39 1 4.9353 5.6758 -4.1876 40 1 5.3447 6.6488 -1.9644 41 1 4.9350 5.3121 0.0610 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167813601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:14 Heat of formation + Delta-G solvation = -42.484543 kcal Electronic energy + Delta-G solvation = -20788.254757 eV Core-core repulsion = 17860.164861 eV Total energy + Delta-G solvation = -2928.089896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76314 -39.10302 -36.72505 -34.66483 -34.06654 -31.77947 -31.13208 -30.14009 -29.01115 -27.17792 -24.85413 -24.16466 -22.75675 -21.36935 -20.91786 -18.64892 -18.45672 -17.34867 -16.68444 -16.45895 -16.13113 -16.09529 -15.76292 -15.12975 -14.55297 -14.42805 -14.40357 -14.02390 -13.66162 -13.42492 -13.13292 -13.07777 -12.97071 -12.87919 -12.69011 -12.44003 -12.35061 -12.24580 -11.96786 -11.96181 -11.71555 -11.48106 -11.29466 -10.95266 -10.60597 -10.28249 -9.60274 -8.34149 -7.73223 -6.35437 0.76255 0.99982 1.35979 1.37885 1.45892 2.33682 2.61503 3.07593 3.22677 3.44535 3.84009 3.95100 4.00064 4.22611 4.31085 4.35618 4.50740 4.57742 4.68985 4.76693 4.78494 4.83030 4.89426 4.96795 5.00832 5.04280 5.13109 5.16776 5.20105 5.27066 5.37702 5.44022 5.49898 5.62599 5.73914 5.80926 5.93937 6.11344 6.28319 6.55046 6.86302 6.97669 7.02499 7.36453 8.84260 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013664 B = 0.008119 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.647216 B = 3448.052415 C = 4971.023831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.123 3.877 4 C -0.133 4.133 5 O -0.559 6.559 6 C 0.100 3.900 7 N -0.611 5.611 8 C 0.270 3.730 9 C -0.543 4.543 10 H 0.048 0.952 11 C 0.014 3.986 12 N -0.926 5.926 13 Si 0.958 3.042 14 H -0.276 1.276 15 H -0.280 1.280 16 H -0.268 1.268 17 C 0.223 3.777 18 C -0.205 4.205 19 C -0.073 4.073 20 C -0.202 4.202 21 C -0.085 4.085 22 C -0.228 4.228 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.379 0.621 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.022 0.978 35 H -0.002 1.002 36 H 0.266 0.734 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.137 0.863 40 H 0.122 0.878 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 -7.355 -11.965 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C 0.081 3.919 4 C -0.191 4.191 5 O -0.366 6.366 6 C -0.024 4.024 7 N -0.316 5.316 8 C 0.149 3.851 9 C -0.582 4.582 10 H 0.066 0.934 11 C -0.186 4.186 12 N -0.566 5.566 13 Si 0.783 3.217 14 H -0.201 1.201 15 H -0.205 1.205 16 H -0.192 1.192 17 C 0.118 3.882 18 C -0.228 4.228 19 C -0.092 4.092 20 C -0.222 4.222 21 C -0.103 4.103 22 C -0.251 4.251 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.016 0.984 36 H 0.075 0.925 37 H 0.151 0.849 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.140 0.860 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.651 -7.004 -11.135 14.741 hybrid contribution 1.309 0.014 0.752 1.510 sum -5.342 -6.990 -10.383 13.609 Atomic orbital electron populations 1.21682 0.94588 1.01835 1.01954 1.22103 0.97547 0.94706 1.03576 1.21640 0.91771 0.92222 0.86267 1.21756 1.01172 1.00147 0.95980 1.86610 1.76631 1.57704 1.15686 1.22149 0.94167 0.83357 1.02764 1.46734 1.68689 1.12422 1.03798 1.18797 0.94437 0.92455 0.79423 1.21829 0.98327 1.35635 1.02401 0.93353 1.25744 1.01730 0.94718 0.96378 1.70033 1.37500 1.38186 1.10842 0.85613 0.79960 0.78790 0.77341 1.20098 1.20494 1.19245 1.18140 0.91851 0.90515 0.87674 1.20734 1.10528 1.01245 0.90272 1.21156 0.96000 0.93744 0.98272 1.21042 1.07229 0.97153 0.96745 1.21022 0.97734 0.99182 0.92403 1.20810 1.10075 0.95479 0.98725 0.91479 0.93442 0.92448 0.89760 0.90985 0.94634 0.91462 0.92021 0.77200 0.89494 0.91366 0.96012 0.98376 0.92499 0.84884 0.83349 0.84542 0.85986 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.41 71.98 0.68 -2.18 16 2 C -0.14 -3.02 5.17 30.59 0.16 -2.86 16 3 C 0.12 3.54 0.86 -10.79 -0.01 3.53 16 4 C -0.13 -4.58 7.12 71.98 0.51 -4.07 16 5 O -0.56 -16.00 10.91 -148.98 -1.63 -17.62 16 6 C 0.10 3.34 4.59 86.38 0.40 3.73 16 7 N -0.61 -26.03 2.17 -701.64 -1.52 -27.56 16 8 C 0.27 14.12 3.69 85.63 0.32 14.43 16 9 C -0.54 -30.56 9.39 25.60 0.24 -30.32 16 10 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 11 C 0.01 0.76 5.46 84.66 0.46 1.22 16 12 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 13 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 C 0.22 9.14 6.30 38.22 0.24 9.38 16 18 C -0.21 -6.56 7.94 22.40 0.18 -6.38 16 19 C -0.07 -2.04 10.04 22.25 0.22 -1.82 16 20 C -0.20 -6.00 10.04 22.29 0.22 -5.78 16 21 C -0.08 -3.04 10.04 22.25 0.22 -2.82 16 22 C -0.23 -10.00 9.21 22.40 0.21 -9.79 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.05 1.04 6.43 -2.39 -0.02 1.02 16 25 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 26 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 1.47 6.12 -2.39 -0.01 1.46 16 29 H 0.07 2.07 6.43 -2.39 -0.02 2.05 16 30 H 0.06 2.13 7.83 -2.39 -0.02 2.11 16 31 H 0.38 8.06 7.32 -74.05 -0.54 7.51 16 32 H 0.09 2.45 6.19 -2.39 -0.01 2.44 16 33 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 34 H 0.02 1.19 6.03 -2.39 -0.01 1.17 16 35 H 0.00 -0.10 6.20 -2.39 -0.01 -0.11 16 36 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 37 H 0.13 3.43 4.67 -2.91 -0.01 3.42 16 38 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 40 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 41 H 0.09 4.50 6.14 -2.91 -0.02 4.48 16 Total: -1.00 -65.74 320.29 3.69 -62.05 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.48 Total: 24.90 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 4.05 Total: -33.71 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -1.24 Total: -81.98 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.63 Total: -17.62 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.74 3.69 -62.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167813601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.562 kcal (2) G-P(sol) polarization free energy of solvation -65.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds