Wall clock time and date at job start Mon Mar 30 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47158 * 2 1 4 4 C 1.34512 * 125.79309 * 90.00483 * 3 2 1 5 5 C 1.41384 * 106.84499 * 179.97438 * 4 3 2 6 6 C 1.34514 * 106.83638 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.78833 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.70101 * 19.64034 * 7 6 5 9 9 C 1.53193 * 109.58635 * 259.29216 * 7 6 5 10 10 C 1.53044 * 109.31355 * 185.57598 * 9 7 6 11 11 H 1.08996 * 109.45777 * 301.35552 * 10 9 7 12 12 C 1.53001 * 109.45729 * 181.38201 * 10 9 7 13 13 C 1.53349 * 109.60726 * 61.37099 * 10 9 7 14 14 C 1.53192 * 109.14874 * 298.71142 * 13 10 9 15 15 N 1.46920 * 109.58738 * 139.99858 * 7 6 5 16 16 C 1.36931 * 120.63405 * 353.37454 * 15 7 6 17 17 H 1.08000 * 119.99915 * 327.25904 * 16 15 7 18 18 C 1.38812 * 120.00031 * 147.26575 * 16 15 7 19 19 N 1.31613 * 120.00276 * 342.44955 * 18 16 15 20 20 Si 1.86799 * 119.99884 * 162.45231 * 18 16 15 21 21 H 1.48502 * 109.47300 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47086 * 119.99759 * 20 18 16 23 23 H 1.48500 * 109.47157 * 239.99828 * 20 18 16 24 24 O 1.34298 * 108.42540 * 0.26387 * 6 5 4 25 25 H 1.09002 * 109.46956 * 59.99712 * 1 2 3 26 26 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47010 * 300.00358 * 1 2 3 28 28 H 1.09003 * 109.46636 * 240.00034 * 2 1 3 29 29 H 1.09002 * 109.46956 * 120.00287 * 2 1 3 30 30 H 1.07998 * 126.57397 * 359.93548 * 4 3 2 31 31 H 1.07994 * 126.58200 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.49133 * 305.52598 * 9 7 6 33 33 H 1.08994 * 109.49935 * 65.62096 * 9 7 6 34 34 H 1.08996 * 109.46904 * 60.00122 * 12 10 9 35 35 H 1.09000 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.08997 * 109.47126 * 299.99670 * 12 10 9 37 37 H 1.08999 * 109.68664 * 178.75070 * 13 10 9 38 38 H 1.09001 * 109.47424 * 58.54559 * 13 10 9 39 39 H 1.09000 * 109.59040 * 294.72298 * 14 13 10 40 40 H 1.08999 * 109.59044 * 174.43388 * 14 13 10 41 41 H 0.96996 * 120.00416 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2947 2.1625 1.0911 5 6 2.7410 3.4230 0.6320 6 6 2.7252 3.3760 -0.7122 7 6 3.1229 4.4967 -1.6380 8 1 3.7428 5.2146 -1.1008 9 6 1.8668 5.1969 -2.1659 10 6 2.2701 6.2406 -3.2101 11 1 2.9513 6.9617 -2.7585 12 6 1.0210 6.9659 -3.7146 13 6 2.9677 5.5480 -4.3871 14 6 4.2349 4.8516 -3.8809 15 7 3.8745 3.9517 -2.7767 16 6 4.2327 2.6305 -2.8081 17 1 4.4628 2.1114 -1.8894 18 6 4.3003 1.9584 -4.0208 19 7 3.7045 2.4564 -5.0834 20 14 5.2369 0.3469 -4.1445 21 1 5.8121 0.0056 -2.8186 22 1 4.3115 -0.7316 -4.5755 23 1 6.3320 0.4858 -5.1378 24 8 2.2900 2.1628 -1.0895 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1848 1.8543 2.1203 31 1 3.0383 4.2622 1.2432 32 1 1.2054 4.4612 -2.6235 33 1 1.3503 5.6881 -1.3413 34 1 0.5257 7.4604 -2.8791 35 1 1.3080 7.7090 -4.4587 36 1 0.3395 6.2448 -4.1659 37 1 3.2358 6.2874 -5.1417 38 1 2.2961 4.8087 -4.8237 39 1 4.9455 5.5983 -3.5266 40 1 4.6833 4.2754 -4.6902 41 1 3.7514 1.9866 -5.9307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174448102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:04 Heat of formation + Delta-G solvation = 16.694331 kcal Electronic energy + Delta-G solvation = -21113.581698 eV Core-core repulsion = 18188.057990 eV Total energy + Delta-G solvation = -2925.523708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.80322 -37.75859 -33.93430 -33.56000 -32.36655 -31.26686 -30.08444 -27.49079 -26.99268 -24.04322 -23.45117 -21.92285 -20.98069 -20.71716 -19.23871 -18.85669 -16.93556 -15.87213 -15.11681 -14.66945 -14.20982 -14.01879 -13.92485 -13.55776 -13.31211 -13.09018 -12.75330 -12.65954 -12.21302 -12.02734 -11.94895 -11.47412 -11.28937 -11.17362 -11.09540 -11.06347 -10.75014 -10.67895 -10.34436 -10.27361 -10.04144 -9.87190 -9.49037 -9.27740 -9.09271 -8.38749 -7.53880 -6.54358 -5.74590 -3.22186 2.53157 3.28287 3.38073 3.46467 3.49963 3.73847 4.53307 5.11219 5.25510 5.36926 5.42738 5.49818 5.53886 5.56138 5.63932 5.71573 5.81156 5.83700 5.98097 6.08340 6.12924 6.17427 6.25205 6.30980 6.35485 6.36104 6.49753 6.53240 6.58151 6.69791 6.84201 6.86497 6.93586 7.03286 7.05236 7.25062 7.56727 7.68157 7.88039 8.09969 8.51685 9.23805 9.83620 10.42703 11.31464 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.010179 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.411999 B = 2750.206779 C = 4159.922125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.032 4.032 4 C -0.218 4.218 5 C -0.244 4.244 6 C 0.047 3.953 7 C 0.240 3.760 8 H 0.056 0.944 9 C -0.120 4.120 10 C -0.086 4.086 11 H 0.056 0.944 12 C -0.142 4.142 13 C -0.121 4.121 14 C 0.162 3.838 15 N -0.584 5.584 16 C -0.237 4.237 17 H 0.064 0.936 18 C 0.010 3.990 19 N -0.892 5.892 20 Si 0.894 3.106 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 O -0.126 6.126 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.000 1.000 40 H 0.094 0.906 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 2.323 7.338 9.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 C -0.084 4.084 4 C -0.238 4.238 5 C -0.263 4.263 6 C -0.005 4.005 7 C 0.133 3.867 8 H 0.073 0.927 9 C -0.160 4.160 10 C -0.105 4.105 11 H 0.075 0.925 12 C -0.200 4.200 13 C -0.160 4.160 14 C 0.037 3.963 15 N -0.308 5.308 16 C -0.367 4.367 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 O -0.019 6.019 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.018 0.982 40 H 0.112 0.888 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.900 2.138 6.865 8.701 hybrid contribution 0.408 -0.785 0.098 0.890 sum -4.491 1.354 6.963 8.396 Atomic orbital electron populations 1.21762 0.94614 1.01566 1.02438 1.19956 0.95831 0.88591 1.03477 1.22343 1.05487 0.95256 0.85277 1.21290 1.09138 0.94879 0.98444 1.21346 1.11701 0.99369 0.93920 1.22505 0.99115 0.85568 0.93353 1.19456 0.91324 0.88314 0.87583 0.92710 1.22081 0.98293 0.97948 0.97656 1.21097 0.96217 0.96252 0.96910 0.92504 1.21822 0.98233 0.99780 1.00120 1.22011 1.00050 0.98450 0.95446 1.20867 0.92808 0.90988 0.91670 1.44222 1.61205 1.06746 1.18625 1.19051 1.38803 0.85948 0.92885 0.91879 1.25049 0.99340 0.97296 0.97222 1.70009 1.43293 1.39647 1.00599 0.86342 0.79621 0.83963 0.77641 1.20260 1.21735 1.21597 1.84375 1.62864 1.21756 1.32910 0.92201 0.92268 0.92604 0.90192 0.89798 0.84823 0.84597 0.91705 0.93422 0.93690 0.93338 0.92997 0.94125 0.90656 0.98227 0.88793 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.89 37.16 0.37 -1.54 16 2 C -0.04 -0.62 6.47 -27.88 -0.18 -0.80 16 3 C -0.03 -0.62 6.58 -35.63 -0.23 -0.85 16 4 C -0.22 -3.89 10.81 -39.70 -0.43 -4.32 16 5 C -0.24 -4.63 10.80 -39.70 -0.43 -5.06 16 6 C 0.05 1.02 5.03 -35.62 -0.18 0.84 16 7 C 0.24 5.19 3.34 -68.75 -0.23 4.96 16 8 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 9 C -0.12 -2.35 4.64 -26.61 -0.12 -2.47 16 10 C -0.09 -1.55 2.68 -90.42 -0.24 -1.80 16 11 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 12 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 13 C -0.12 -2.51 5.39 -26.45 -0.14 -2.65 16 14 C 0.16 3.81 5.67 -3.70 -0.02 3.79 16 15 N -0.58 -14.59 2.97 -166.08 -0.49 -15.09 16 16 C -0.24 -6.51 7.58 -15.06 -0.11 -6.63 16 17 H 0.06 1.81 6.65 -52.49 -0.35 1.46 16 18 C 0.01 0.28 4.92 -17.43 -0.09 0.20 16 19 N -0.89 -25.25 11.31 55.49 0.63 -24.63 16 20 Si 0.89 22.01 29.59 -169.99 -5.03 16.98 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 O -0.13 -2.92 8.53 5.70 0.05 -2.87 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 32 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.00 0.00 8.14 -51.93 -0.42 -0.43 16 40 H 0.09 2.48 5.76 -51.93 -0.30 2.18 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -29.37 325.67 -8.61 -37.98 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.97 Total: 0.89 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.70 Total: -18.18 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.14 Total: -39.71 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: 0.05 Total: -2.87 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.37 -8.61 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174448102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.676 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds